View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15025_high_52 (Length: 261)
Name: NF15025_high_52
Description: NF15025
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15025_high_52 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 19 - 251
Target Start/End: Complemental strand, 23514497 - 23514265
Alignment:
| Q |
19 |
tgttgatctctcaaccaagaatcaatcaattttcaaaccctagcctccaggttgttgcttcacaacctcctatgccatctttgaggaataatgtcaatgt |
118 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23514497 |
tgttgatctctcaaccaagagtcaatcaattttcaaatcctagcctccaggttgttgcttcacaacctcctatgccatctttgaggaataatgtcaatgt |
23514398 |
T |
|
| Q |
119 |
tactaacatgacatcatctgtagctccaccaatccttcaaatgaatgatgaaattgaggtttcttcaatcgatggaactaaggcatatatcaaacagttg |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
23514397 |
tactaacatgacatcatctgtagctccaccaatccttcaaatgaatgatgaaattgaggtttcttcaatcgatggaactagggcatatatcaaacagttg |
23514298 |
T |
|
| Q |
219 |
gataaaccaattgataacaatgtctgtgctcct |
251 |
Q |
| |
|
||||||||||||||||||||||| ||||||||| |
|
|
| T |
23514297 |
gataaaccaattgataacaatgtgtgtgctcct |
23514265 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 163 - 241
Target Start/End: Complemental strand, 33709834 - 33709756
Alignment:
| Q |
163 |
atgatgaaattgaggtttcttcaatcgatggaactaaggcatatatcaaacagttggataaaccaattgataacaatgt |
241 |
Q |
| |
|
||||||| || || |||||| || | ||||||||||||||||||||||| |||||||| |||||||| ||||||||||| |
|
|
| T |
33709834 |
atgatgacatggatgtttctccagttgatggaactaaggcatatatcaatcagttggacaaaccaatcgataacaatgt |
33709756 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University