View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15025_high_6 (Length: 555)
Name: NF15025_high_6
Description: NF15025
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15025_high_6 |
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| [»] chr2 (3 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 383; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 383; E-Value: 0
Query Start/End: Original strand, 135 - 555
Target Start/End: Complemental strand, 37808477 - 37808055
Alignment:
| Q |
135 |
agtgaagaatgattttgttgggaaatcaattcatcaaattatctatatatccattaagggcacgagtgtaaatttaagagatacatttttaaaagctgga |
234 |
Q |
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| T |
37808477 |
agtgaagaatgattttgttgggaaatcaattcatcaaattatctatatatccattaagggcacgagtgtaaatttaagagatacatttttaaaaaatgga |
37808378 |
T |
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| Q |
235 |
tggatatatctccacggttggaaaattctacaattttaaagagtggtagaatcattaattttcacattgtcaaatttattgcaatgttatttaagatggg |
334 |
Q |
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| T |
37808377 |
tggatatatctccacggttggaaaattctacaattttaaagagtggtagaatcattaattttcacattgtcaaatttattgcaatgttatttaagatggg |
37808278 |
T |
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| Q |
335 |
gataatataatatgttgaaatgcttttaatcaaatttatcctaaaaaactcatggacgtgtaggttaattgttggcatgtgtgtgcctttttatcaacta |
434 |
Q |
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| T |
37808277 |
gataatataatatgttgaaatgcttttaatcaaatttatcctaaaaaactcatggacgtgtaggttaattgttggcatgtgtgtgcctttttatcaacta |
37808178 |
T |
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| Q |
435 |
tttgaatataaaaagatataaaaaatagagtgatttgataggtttat-gat-atacacacaaattgaatggatacattagagagaaagagatggagaaca |
532 |
Q |
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| T |
37808177 |
tttgaatataaaaagatataaaaaatagagtgatttgataggtttatatatgatatacacaaattgaatgcatacattagagagaaagagatggagagca |
37808078 |
T |
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| Q |
533 |
aaatagagtgatttaataggttt |
555 |
Q |
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| T |
37808077 |
aaatagagtgatttaataggttt |
37808055 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 37808612 - 37808577
Alignment:
| Q |
1 |
acttttgagttcttgagctttttgggttaatgatgc |
36 |
Q |
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| T |
37808612 |
acttttgagttcttgagctttttgggttaatgatgc |
37808577 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 456 - 491
Target Start/End: Complemental strand, 37808078 - 37808043
Alignment:
| Q |
456 |
aaaatagagtgatttgataggtttatgatatacaca |
491 |
Q |
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| T |
37808078 |
aaaatagagtgatttaataggtttatgatatacaca |
37808043 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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