View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15025_low_1 (Length: 747)

Name: NF15025_low_1
Description: NF15025
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15025_low_1
NF15025_low_1
[»] chr6 (12 HSPs)
chr6 (19-600)||(11170659-11171240)
chr6 (19-550)||(11209481-11210012)
chr6 (19-538)||(11276043-11276562)
chr6 (19-533)||(11196812-11197326)
chr6 (19-553)||(11156359-11156895)
chr6 (56-533)||(11241005-11241488)
chr6 (19-432)||(11199977-11200394)
chr6 (19-432)||(11161226-11161651)
chr6 (19-529)||(11133083-11133593)
chr6 (670-740)||(11171312-11171382)
chr6 (20-143)||(11314688-11314811)
chr6 (687-732)||(8382104-8382149)
[»] scaffold1207 (1 HSPs)
scaffold1207 (19-599)||(977-1538)
[»] chr7 (21 HSPs)
chr7 (169-247)||(8382727-8382805)
chr7 (169-247)||(8602213-8602291)
chr7 (166-247)||(13333307-13333388)
chr7 (166-246)||(10494226-10494306)
chr7 (166-246)||(8585558-8585638)
chr7 (674-733)||(2407345-2407404)
chr7 (166-245)||(8628768-8628847)
chr7 (687-733)||(7875716-7875762)
chr7 (166-240)||(27830733-27830807)
chr7 (173-235)||(29577532-29577594)
chr7 (166-247)||(8654686-8654767)
chr7 (166-247)||(8667655-8667736)
chr7 (167-247)||(6789749-6789829)
chr7 (166-246)||(8671482-8671562)
chr7 (673-733)||(40352657-40352717)
chr7 (173-247)||(3147515-3147589)
chr7 (169-247)||(7877584-7877662)
chr7 (169-247)||(8538275-8538353)
chr7 (358-466)||(8647305-8647410)
chr7 (687-729)||(41415672-41415714)
chr7 (415-524)||(3147757-3147866)
[»] scaffold0734 (2 HSPs)
scaffold0734 (679-733)||(1908-1962)
scaffold0734 (496-550)||(6714-6770)
[»] chr4 (3 HSPs)
chr4 (167-247)||(9335742-9335822)
chr4 (167-246)||(30775489-30775568)
chr4 (166-247)||(35132684-35132765)
[»] chr2 (3 HSPs)
chr2 (166-247)||(7542462-7542543)
chr2 (166-246)||(16661844-16661924)
chr2 (166-247)||(16657368-16657449)
[»] chr5 (1 HSPs)
chr5 (687-731)||(5003527-5003571)
[»] chr1 (3 HSPs)
chr1 (407-465)||(15595516-15595571)
chr1 (166-246)||(34466645-34466725)
chr1 (688-733)||(33096059-33096104)
[»] chr8 (1 HSPs)
chr8 (687-733)||(18896459-18896505)


Alignment Details
Target: chr6 (Bit Score: 494; Significance: 0; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 494; E-Value: 0
Query Start/End: Original strand, 19 - 600
Target Start/End: Original strand, 11170659 - 11171240
Alignment:
Q  19 aaagtcttgtcccccgaggtgagtgtctcctccagtggccttaacattgatatcaccattctcaaatgtgagaacagacacgtccaaagtaccaccacct 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11170659 aaagtcttgtcccccgaggtgagtgtctcctccagtggccttaacattgatatcaccattctcaaatgtgagaacagacacgtccaaagtaccaccacct 11170758  T
Q  119 aagtcaaaaatgaaaacatttctacatccatgattaaatggtttcaagtcaaggccatatgcaattgcagctgcagtaggctcattgagtattcgcataa 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  11170759 aagtcaaaaatgaaaacatttctacatccatgattaaatggtttcaagtcaaggccatatgcaattgcagctgcagtaggctcattgagtattcgcaaaa 11170858  T
Q  219 cattgaggccagcaatagcacccgcatctcgagtagactggcgttgtgagtcattaaagtatgcaggcacagttataacaacatccttcactgttgatcc 318  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||    
T  11170859 cattgaggccagcaatagcacccgcatctcgagtagactggcgttgtgagtcattaaagtatgcaggcacagttataacaacatcctccactattgatcc 11170958  T
Q  319 aaggtaagcttcagctatctcggccatttttgccaataccatcgatgatatttcttcagcagcaaaatgcttttcctcgtcattatagttaacaacaatc 418  Q
    |||| | | ||| |||||||||  ||||||  |||||||||| ||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  11170959 aaggaaggtttctgctatctcgcgcattttcaccaataccatggatgagatttcttcagcagcaaaatgtttttcctcgtcattatagttaacaacaatc 11171058  T
Q  419 atgggtttgtcattcaggtcaccaattactttgaatggccacaacttcacatcactttgtactatgggatcgcaaaatttccgaccaattagcctctttg 518  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||    
T  11171059 atgggtttgtcattcaggtcaccaattactttgaatggccacaacttcacatcactttgtactatgggatcactaaatttccgaccaattagcctctttg 11171158  T
Q  519 catctacaaaacaaaagagagttgtgtacactatgnnnnnnnnttggatcgctttatgaattaatcattctatgtggatttg 600  Q
    |||||||||||||||||||||||||||||||||||        |||||||||||||||||||||||||||||||||||||||    
T  11171159 catctacaaaacaaaagagagttgtgtacactatgaaaaacaattggatcgctttatgaattaatcattctatgtggatttg 11171240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 424; E-Value: 0
Query Start/End: Original strand, 19 - 550
Target Start/End: Original strand, 11209481 - 11210012
Alignment:
Q  19 aaagtcttgtcccccgaggtgagtgtctcctccagtggccttaacattgatatcaccattctcaaatgtgagaacagacacgtccaaagtaccaccacct 118  Q
    ||||||||||||||||||||||||||||||| || | |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  11209481 aaagtcttgtcccccgaggtgagtgtctcctgcaatagccttaacattgatatcaccatcctcaaatgtgagaacagacacgtccaaagtaccaccacct 11209580  T
Q  119 aagtcaaaaatgaaaacatttctacatccatgattaaatggtttcaagtcaaggccatatgcaattgcagctgcagtaggctcattgagtattcgcataa 218  Q
    |||||||| |||||||||||||||| |||||||||||||||||||| | ||| |||||||||||||||||||||||||||||||||||||||||||| ||    
T  11209581 aagtcaaatatgaaaacatttctacgtccatgattaaatggtttcatgccaaagccatatgcaattgcagctgcagtaggctcattgagtattcgcaaaa 11209680  T
Q  219 cattgaggccagcaatagcacccgcatctcgagtagactggcgttgtgagtcattaaagtatgcaggcacagttataacaacatccttcactgttgatcc 318  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||    
T  11209681 cattgaggccagcaatagcacccgcatctcgagtagactggcgttgtgagtcattaaagtatgcaggcacagttataacaacatcatccactgttgatcc 11209780  T
Q  319 aaggtaagcttcagctatctcggccatttttgccaataccatcgatgatatttcttcagcagcaaaatgcttttcctcgtcattatagttaacaacaatc 418  Q
    |||| | ||||| ||| ||||   |||||| ||||||||||| ||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  11209781 aaggaaggcttctgctgtctctcgcattttcgccaataccatggatgagatttcttcagcagcaaaatgcttttcctcgtctttatagttaacaacaatc 11209880  T
Q  419 atgggtttgtcattcaggtcaccaattactttgaatggccacaacttcacatcactttgtactatgggatcgcaaaatttccgaccaattagcctctttg 518  Q
    |||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||    
T  11209881 atgggtttgtcatttaggtcgccaattactttgaatggccacaacttcacatcactttctactatggggtcgcaaaatttccgaccaattagcctctttg 11209980  T
Q  519 catctacaaaacaaaagagagttgtgtacact 550  Q
    ||||||||||||||||||||||||||||||||    
T  11209981 catctacaaaacaaaagagagttgtgtacact 11210012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 420; E-Value: 0
Query Start/End: Original strand, 19 - 538
Target Start/End: Original strand, 11276043 - 11276562
Alignment:
Q  19 aaagtcttgtcccccgaggtgagtgtctcctccagtggccttaacattgatatcaccattctcaaatgtgagaacagacacgtccaaagtaccaccacct 118  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  11276043 aaagtcttgtcccccgaggtgagtgtctcctccaatggccttaacattgatatcaccattctcaaaagtgagaacagacacgtccaaagtaccaccacct 11276142  T
Q  119 aagtcaaaaatgaaaacatttctacatccatgattaaatggtttcaagtcaaggccatatgcaattgcagctgcagtaggctcattgagtattcgcataa 218  Q
    |||||||| ||||||||||||||||||||||||||||||||||||  || || ||||||||||||||||||||||||||||||||| | |||||||||||    
T  11276143 aagtcaaatatgaaaacatttctacatccatgattaaatggtttcgtgttaaagccatatgcaattgcagctgcagtaggctcatttattattcgcataa 11276242  T
Q  219 cattgaggccagcaatagcacccgcatctcgagtagactggcgttgtgagtcattaaagtatgcaggcacagttataacaacatccttcactgttgatcc 318  Q
    | || |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||    
T  11276243 cgtttaggccagcaatagcacccgcatctcgagtagactggcgctgtgagtcattaaagtatgcaggcacagttataacaacatcctccactgttaatcc 11276342  T
Q  319 aaggtaagcttcagctatctcggccatttttgccaataccatcgatgatatttcttcagcagcaaaatgcttttcctcgtcattatagttaacaacaatc 418  Q
    |||| | ||||| |||||||||  |||||| ||||||||||| ||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  11276343 aaggaaggcttctgctatctcgcgcattttcgccaataccatggatgagatttcttcagcagtaaaatgcttttcctcgtcattatagttaacaacaatc 11276442  T
Q  419 atgggtttgtcattcaggtcaccaattactttgaatggccacaacttcacatcactttgtactatgggatcgcaaaatttccgaccaattagcctctttg 518  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||    
T  11276443 atgggtttgtcattcaggtcaccaattactttgaatggccacaacttcacatcactttgtactatgggatcactaaatttccgaccaattagcctctttg 11276542  T
Q  519 catctacaaaacaaaagaga 538  Q
    ||||||||||||||||||||    
T  11276543 catctacaaaacaaaagaga 11276562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 391; E-Value: 0
Query Start/End: Original strand, 19 - 533
Target Start/End: Original strand, 11196812 - 11197326
Alignment:
Q  19 aaagtcttgtcccccgaggtgagtgtctcctccagtggccttaacattgatatcaccattctcaaatgtgagaacagacacgtccaaagtaccaccacct 118  Q
    ||||||||||||||| ||||||||||||||| || | ||||||||||||||| |||| ||||||||||||||||  |||||||||| |||||||||||||    
T  11196812 aaagtcttgtcccccaaggtgagtgtctcctgcaatcgccttaacattgatagcaccgttctcaaatgtgagaatggacacgtccagagtaccaccacct 11196911  T
Q  119 aagtcaaaaatgaaaacatttctacatccatgattaaatggtttcaagtcaaggccatatgcaattgcagctgcagtaggctcattgagtattcgcataa 218  Q
    || |||||||||||||||| |||||||||||||||||| ||||||| |||||| |||||||||||||||||||||| ||||||||||| |||||||||||    
T  11196912 aaatcaaaaatgaaaacatgtctacatccatgattaaaaggtttcatgtcaagaccatatgcaattgcagctgcagaaggctcattgattattcgcataa 11197011  T
Q  219 cattgaggccagcaatagcacccgcatctcgagtagactggcgttgtgagtcattaaagtatgcaggcacagttataacaacatccttcactgttgatcc 318  Q
    ||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  11197012 cattgaggccagcaataacacccgcatctcgagtggactggcgttgtgagtcattaaagtaagcaggcacagttataacaacatccttcactgttgatcc 11197111  T
Q  319 aaggtaagcttcagctatctcggccatttttgccaataccatcgatgatatttcttcagcagcaaaatgcttttcctcgtcattatagttaacaacaatc 418  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11197112 aaggtaagcttcagctatctcggccatttttgccaataccatcgatgagatttcttcagcagcaaaatgcttttcctcgtcattatagttaacaacaatc 11197211  T
Q  419 atgggtttgtcattcaggtcaccaattactttgaatggccacaacttcacatcactttgtactatgggatcgcaaaatttccgaccaattagcctctttg 518  Q
    |||||||||||||| ||||| |||||||||||||| |||||| |||||| |||||||||||| || |  |||||||| |||| |||||||||||||||||    
T  11197212 atgggtttgtcattgaggtcgccaattactttgaagggccacgacttcatatcactttgtacgattgagtcgcaaaacttcctaccaattagcctctttg 11197311  T
Q  519 catctacaaaacaaa 533  Q
    |||||||||||||||    
T  11197312 catctacaaaacaaa 11197326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 370; E-Value: 0
Query Start/End: Original strand, 19 - 553
Target Start/End: Original strand, 11156359 - 11156895
Alignment:
Q  19 aaagtcttgtcccccgaggtgagtgtctcctccagtggccttaacattgatatcaccattctcaaatgtgagaacagacacgtccaaagtaccaccacct 118  Q
    ||||||||||||||| ||||||||||||||| || | ||||||||||||||| |||| ||||||||||||||||  |||||||||||||||||||| |||    
T  11156359 aaagtcttgtcccccaaggtgagtgtctcctgcaatcgccttaacattgatagcacctttctcaaatgtgagaatggacacgtccaaagtaccacctcct 11156458  T
Q  119 aagtcaaaaatgaaaacatttctacatccatgattaaatggtttcaagtcaaggccatatgcaattgcagctgcagtaggctcattgagtattcgcataa 218  Q
    || |||||||||||||||| | |||||||||||||||| ||||||| |||||| |||||||||||||||||||||| ||||||||||| |||||||||||    
T  11156459 aaatcaaaaatgaaaacatgtttacatccatgattaaaaggtttcatgtcaagaccatatgcaattgcagctgcagaaggctcattgattattcgcataa 11156558  T
Q  219 cattgaggccagcaatagcacccgcatctcgagtagactggcgttgtgagtcattaaagtatgcaggcacagttataacaacatccttcactgttgatcc 318  Q
    ||||||||||||||||| ||||||||||| | || |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  11156559 cattgaggccagcaataacacccgcatcttgggtggactggcgttgtgagtcattaaagtaagcaggcacagttataacaacatccttcactgttgatcc 11156658  T
Q  319 aaggtaagcttcagctatctcggccatttttgccaataccatcgatgatatttcttcagcagcaaaatgcttttcctcgtcattatagttaacaacaatc 418  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  11156659 aaggtaaacttcagctatctcggccatttttgccaataccatcgatgagatttcttcagcagcaaaatgcttttcctcgtctttatagttaacaacaatc 11156758  T
Q  419 atgggtttgtcattcaggtcaccaattactttgaatggccacaacttcacatcactttgtactatgggatcgcaaaatttccgaccaattagcctctttg 518  Q
    |||||||||||||| ||||  |||||||||||||| |||||| |||||| |||||||||||| || |  |||||||| |||| |||||||||||||||||    
T  11156759 atgggtttgtcattgaggttgccaattactttgaagggccacgacttcatatcactttgtacgattgagtcgcaaaacttcctaccaattagcctctttg 11156858  T
Q  519 catctacaaaacaa--aagagagttgtgtacactatg 553  Q
    ||||||||||||||  || ||||||| ||||||||||    
T  11156859 catctacaaaacaaacaaaagagttgagtacactatg 11156895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 56 - 533
Target Start/End: Complemental strand, 11241488 - 11241005
Alignment:
Q  56 gccttaacattgatatcaccattctcaaatgtgagaacagacacgtccaaagtaccaccacctaagtcaaaaatgaaaacatttctacatccatgattaa 155  Q
    ||||||||||||||| |||||||||||||||||||||  |||||||||| ||||||||||||||| || ||||| | ||||| |||||||||||||||||    
T  11241488 gccttaacattgatagcaccattctcaaatgtgagaatggacacgtccagagtaccaccacctaaatcgaaaattagaacatgtctacatccatgattaa 11241389  T
Q  156 atggtttcaagtcaaggccatatgcaattgcagctgcagtaggctcattgagtattcgcataacattgaggccagcaatagcacccgcatctcgagtaga 255  Q
      | ||||| || ||||||||||||||||||| |||||||||||||| ||| ||||| || ||| |||||||||||||||||||||||||||||| ||||    
T  11241388 gagttttcatgttaaggccatatgcaattgcaactgcagtaggctcagtgattattcacaaaactttgaggccagcaatagcacccgcatctcgaataga 11241289  T
Q  256 ctggcgttgtgagtcattaaagtatgcaggcacagttataacaacatccttcactgttgatccaaggtaagcttcagctatctcggccatttttgccaat 355  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  11241288 ctggcgttgtgagtcattaaagtaagcaggcacagttataacaacatccttcactgttgatccaaggtaagcttcagctatcttggccatttttgccaat 11241189  T
Q  356 accatcgatgatatttcttcagcagcaaaatgcttttcctcgtcattatagttaacaacaatcatgggtttgtcattcaggtcaccaattactttgaatg 455  Q
    ||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||| | ||||| |||||||||||||||| |||||||||||||| |    
T  11241188 accatcgatgagatttcttcagcagcgaaatgcttttcctcgtcattatagttaacaatagtcatgtgtttgtcattcaggtcgccaattactttgaagg 11241089  T
Q  456 gccacaacttcacatcactttgtactatgggatcgca------aaatttccgaccaattagcctctttgcatctacaaaacaaa 533  Q
    |||||||||||| |||||||||||  ||||| || ||      ||| |||| ||||||||||||||||||||||||||||||||    
T  11241088 gccacaacttcatatcactttgtatgatggggtcacaaaacttaaacttcctaccaattagcctctttgcatctacaaaacaaa 11241005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 19 - 432
Target Start/End: Original strand, 11199977 - 11200394
Alignment:
Q  19 aaagtcttgtcccccgaggtgagtgtctcctccagtggccttaacattgatatcaccattctcaaatgtgagaacagacacgtccaaagtaccaccacct 118  Q
    ||||||||||||||| ||||||||||||||| || | ||||||||||||||| |||||||||||||||||||||  ||||| |||| |||||||||||||    
T  11199977 aaagtcttgtcccccaaggtgagtgtctcctgcaatcgccttaacattgatagcaccattctcaaatgtgagaatggacacatccagagtaccaccacct 11200076  T
Q  119 aagtcaaaaatgaaaacatttctacatccatgattaaatggtttcaagtcaaggccatatgcaattgcagctgcagtaggctcattgagtattcgcataa 218  Q
    || | ||||||||||||||||||||||||||||||||| ||||||| |||||| |||||||||||||||||||||| ||||||||||| |||||||| ||    
T  11200077 aaataaaaaatgaaaacatttctacatccatgattaaaaggtttcatgtcaagaccatatgcaattgcagctgcagaaggctcattgattattcgcaaaa 11200176  T
Q  219 cattgaggccagcaatagcacccgcatctcgagtagactgg----cgttgtgagtcattaaagtatgcaggcacagttataacaacatccttcactgttg 314  Q
    |||||||||||||||||||||||||||||| ||||||||||    |||||||| ||||||||||||| ||||||| ||||||||||||||||||||||||    
T  11200177 cattgaggccagcaatagcacccgcatctcaagtagactggcgtacgttgtgaatcattaaagtatgtaggcacaattataacaacatccttcactgttg 11200276  T
Q  315 atccaaggtaagcttcagctatctcggccatttttgccaataccatcgatgatatttcttcagcagcaaaatgcttttcctcgtcattatagttaacaac 414  Q
    ||||||||||||||||||| |||||| ||||||||| ||||||||| ||||| |||||||| ||||||||||||||||||||||||||||||||||||||    
T  11200277 atccaaggtaagcttcagcaatctcgcccatttttgtcaataccatggatgagatttcttctgcagcaaaatgcttttcctcgtcattatagttaacaac 11200376  T
Q  415 aatcatgggtttgtcatt 432  Q
    ||||||||||||||||||    
T  11200377 aatcatgggtttgtcatt 11200394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 260; E-Value: 1e-144
Query Start/End: Original strand, 19 - 432
Target Start/End: Original strand, 11161226 - 11161651
Alignment:
Q  19 aaagtcttgtcccccgaggtgagtgtctcctccagtggccttaacattgatatcaccattctcaaatgtgagaacagacacgtccaaagtaccaccacct 118  Q
    ||||||||||||||  ||||||||||||||| || | ||||||||||||||| ||||| ||||||||||||||| |||||||||||||||||||||||||    
T  11161226 aaagtcttgtcccctaaggtgagtgtctcctgcaatcgccttaacattgatagcaccaatctcaaatgtgagaatagacacgtccaaagtaccaccacct 11161325  T
Q  119 aagtcaaaaatgaaaacatttctacatccatgattaaatggtttcaagtcaaggccatatgcaattgcagctgcagtaggct--------cattgagtat 210  Q
    || | |||||||||||||| | |||||||||||||||| ||||||| |||||| ||||||||||||||| ||||||||||||        |||||| ||     
T  11161326 aaataaaaaatgaaaacatgtatacatccatgattaaaaggtttcatgtcaagaccatatgcaattgcatctgcagtaggctagtagagtcattgattac 11161425  T
Q  211 tcgcataacattgaggccagcaatagcacccgcatctcgagtagactggcgt----tgtgagtcattaaagtatgcaggcacagttataacaacatcctt 306  Q
    |||||||||||| |||||| ||||||||||||||||||||||||||||||||    |||||  |||||||||||| ||||||| ||||||||||||||||    
T  11161426 tcgcataacattaaggccaacaatagcacccgcatctcgagtagactggcgtacgttgtgaaacattaaagtatgtaggcacaattataacaacatcctt 11161525  T
Q  307 cactgttgatccaaggtaagcttcagctatctcggccatttttgccaataccatcgatgatatttcttcagcagcaaaatgcttttcctcgtcattatag 406  Q
    ||||||||||||||||||||||||||| |||||| ||||||||| ||||||||| ||||| |||||||| ||||||||||||||||||||||||||||||    
T  11161526 cactgttgatccaaggtaagcttcagcaatctcgcccatttttgtcaataccatggatgagatttcttctgcagcaaaatgcttttcctcgtcattatag 11161625  T
Q  407 ttaacaacaatcatgggtttgtcatt 432  Q
    ||||||||||||||||||||||||||    
T  11161626 ttaacaacaatcatgggtttgtcatt 11161651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 183; E-Value: 1e-98
Query Start/End: Original strand, 19 - 529
Target Start/End: Original strand, 11133083 - 11133593
Alignment:
Q  19 aaagtcttgtcccccgaggtgagtgtctcctccagtggccttaacattgatatcaccattctcaaatgtgagaacagacacgtccaaagtaccaccacct 118  Q
    |||||||||||||||||||||||| |||||  ||||||| |||    ||||  ||   || || |||||||||| |||||| ||||| |||||||| |||    
T  11133083 aaagtcttgtcccccgaggtgagtatctccagcagtggctttagtggtgattccattcttatcgaatgtgagaatagacacatccaatgtaccacctcct 11133182  T
Q  119 aagtcaaaaatgaaaacatttctacatccatgattaaatggtttcaagtcaaggccatatgcaattgcagctgcagtaggctcattgagtattcgcataa 218  Q
    || |||||||  ||||||| | ||    |||||||||| ||||||  |||||| |||||||||||||||||||| |||||||| |||| |||||||||||    
T  11133183 aaatcaaaaacaaaaacatgtttatggtcatgattaaacggtttcttgtcaagaccatatgcaattgcagctgctgtaggctcgttgattattcgcataa 11133282  T
Q  219 cattgaggccagcaatagcacccgcatctcgagtagactggcgttgtgagtcattaaagtatgcaggcacagttataacaacatccttcactgttgatcc 318  Q
    | ||||| || |||||| |||| ||||||| |||||  |||||||| |||||||||||||| ||||| ||||||||||| ||||||||||||||||||||    
T  11133283 cgttgagacctgcaataacacctgcatctctagtagcttggcgttgcgagtcattaaagtaagcaggaacagttataacgacatccttcactgttgatcc 11133382  T
Q  319 aaggtaagcttcagctatctcggccatttttgccaataccatcgatgatatttcttcagcagcaaaatgcttttcctcgtcattatagttaacaacaatc 418  Q
    ||||||| |||| || |||||    ||||||| ||||||||| ||||||||||| |||||||||||||| ||||||||  |||| || || ||||||||     
T  11133383 aaggtaaacttctgcaatctcacgaatttttgtcaataccattgatgatatttcctcagcagcaaaatgtttttcctctccattgtaattgacaacaata 11133482  T
Q  419 atgggtttgtcattcaggtcaccaattactttgaatggccacaacttcacatcactttgtactatgggatcgcaaaatttccgaccaattagcctctttg 518  Q
     ||||||||||||| | | ||||||||||||| ||||||||||| |||| |||||| || ||||| || || | |||||  | |||||| |||||||| |    
T  11133483 ttgggtttgtcatttatgccaccaattactttaaatggccacaatttcatatcactctgaactatagggtcactaaattctctaccaatgagcctcttcg 11133582  T
Q  519 catctacaaaa 529  Q
    |||||||||||    
T  11133583 catctacaaaa 11133593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 670 - 740
Target Start/End: Original strand, 11171312 - 11171382
Alignment:
Q  670 ttaaccccgtaagtaatacaatcttgggattttggtcccttgtaaaaaacaataacaaatcagctcctatg 740  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  11171312 ttaaccccgtaagtaatacaatcttgggattttggtcccttataaaaaacaataacaaatcagctcctatg 11171382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 20 - 143
Target Start/End: Complemental strand, 11314811 - 11314688
Alignment:
Q  20 aagtcttgtcccccgaggtgagtgtctcctccagtggccttaacattgatatcaccattctcaaatgtgagaacagacacgtccaaagtaccaccaccta 119  Q
    |||||||||||||| |||||||||||||| |||  |||| |||| |||||  |||||||||||| |||||||| |||||| ||||||||||| ||||| |    
T  11314811 aagtcttgtcccccaaggtgagtgtctccgccaacggccctaactttgatggcaccattctcaagtgtgagaatagacacatccaaagtaccgccaccca 11314712  T
Q  120 agtcaaaaatgaaaacatttctac 143  Q
    | || || ||||||||||||||||    
T  11314711 aatcgaagatgaaaacatttctac 11314688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 687 - 732
Target Start/End: Original strand, 8382104 - 8382149
Alignment:
Q  687 acaatcttgggattttggtcccttgtaaaaaacaataacaaatcag 732  Q
    |||||||||  |||||| |||||| |||||||||||||||||||||    
T  8382104 acaatcttgcaattttgatcccttataaaaaacaataacaaatcag 8382149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1207 (Bit Score: 335; Significance: 0; HSPs: 1)
Name: scaffold1207
Description:

Target: scaffold1207; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 19 - 599
Target Start/End: Original strand, 977 - 1538
Alignment:
Q  19 aaagtcttgtcccccgaggtgagtgtctcctccagtggccttaacattgatatcaccattctcaaatgtgagaacagacacgtccaaagtaccaccacct 118  Q
    ||||||||| |||| |||||||||||||||| || | |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  977 aaagtcttgccccctgaggtgagtgtctcctacaatagccttaacattgatatcaccattctcaaatttgagaacagacacgtccaaagtaccaccacct 1076  T
Q  119 aagtcaaaaatgaaaacatttctacatccatgattaaatggtttcaagtcaaggccatatgcaattgcagctgcagtaggctcattgagtattcgcataa 218  Q
    ||||||||||||||||||||||||  ||||||     |||||||   ||||| ||||||||||||||||||||||||||||||||||||||||| || ||    
T  1077 aagtcaaaaatgaaaacatttctatgtccatgtg---atggttttgtgtcaaagccatatgcaattgcagctgcagtaggctcattgagtattcccaaaa 1173  T
Q  219 cattgaggccagcaatagcacccgcatctcgagtagactggcgttgtgagtcattaaagtatgcaggcacagttataacaacatccttcactgttgatcc 318  Q
    |||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  1174 cattgaggccagcaatagcacctgcatctcgagtagattggcgttgtgagtcattaaagtatgcaggcacagttataacaacatcctccactgttgatcc 1273  T
Q  319 aaggtaagcttcagctatctcggccatttttgccaataccatcgatgatatttcttcagcagcaaaatgcttttcctcgtcattatagttaacaacaatc 418  Q
    |||| | ||||| ||| |||||  |||||| ||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1274 aaggaaggcttctgctgtctcgcgcattttcgccaataccatggatgagatttcttcagcagcaaaatgcttttcctcgtcattatagttaacaacaatc 1373  T
Q  419 atgggtttgtcattcaggtcaccaattactttgaatggccacaacttcacatcactttgtactatgggatcgcaaaatttccgaccaattagcctctttg 518  Q
    |||||||| |                   | ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  1374 atgggtttat------------------gtatgaatggccacaacttcacatcactttctactatgggatcgcaaaatttccgaccaattagcctctttg 1455  T
Q  519 catctacaaaacaaaagagagttgtgtacactatg--nnnnnnnnttggatcgctttatgaattaatcattctatgtggattt 599  Q
    |||||||||||||||||||||||||||||||||||          ||| ||||||||||| |||||||||| |||||||||||    
T  1456 catctacaaaacaaaagagagttgtgtacactatgaaaaaaacaattgtatcgctttatgtattaatcattttatgtggattt 1538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 43; Significance: 0.000000000000005; HSPs: 21)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 169 - 247
Target Start/End: Complemental strand, 8382805 - 8382727
Alignment:
Q  169 aaggccatatgcaattgcagctgcagtaggctcattgagtattcgcataacattgaggccagcaatagcacccgcatct 247  Q
    ||||||||||||||  ||||| ||||| |||||||||| ||| ||||| ||||||||||||||||| ||||| ||||||    
T  8382805 aaggccatatgcaagagcagcggcagttggctcattgattatccgcattacattgaggccagcaatcgcaccagcatct 8382727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 169 - 247
Target Start/End: Original strand, 8602213 - 8602291
Alignment:
Q  169 aaggccatatgcaattgcagctgcagtaggctcattgagtattcgcataacattgaggccagcaatagcacccgcatct 247  Q
    ||||||||||||||  ||||||||||| |||||||||| ||| ||||| |||||||| |||||||| ||||| ||||||    
T  8602213 aaggccatatgcaagagcagctgcagttggctcattgattatccgcattacattgagaccagcaatggcaccagcatct 8602291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 166 - 247
Target Start/End: Complemental strand, 13333388 - 13333307
Alignment:
Q  166 gtcaaggccatatgcaattgcagctgcagtaggctcattgagtattcgcataacattgaggccagcaatagcacccgcatct 247  Q
    |||||||||||||||||| || || |||||||| ||||||| |||||| || | ||| ||||||||||||||||| ||||||    
T  13333388 gtcaaggccatatgcaatagctgcagcagtaggttcattgattattcgaatgatattaaggccagcaatagcaccagcatct 13333307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 166 - 246
Target Start/End: Complemental strand, 10494306 - 10494226
Alignment:
Q  166 gtcaaggccatatgcaattgcagctgcagtaggctcattgagtattcgcataacattgaggccagcaatagcacccgcatc 246  Q
    |||||||||||||||||| || || |||||||| ||||||| ||| || || ||||| ||||||||||||||||| |||||    
T  10494306 gtcaaggccatatgcaatagctgcagcagtaggttcattgattatccgaatgacattaaggccagcaatagcaccagcatc 10494226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 166 - 246
Target Start/End: Complemental strand, 8585638 - 8585558
Alignment:
Q  166 gtcaaggccatatgcaattgcagctgcagtaggctcattgagtattcgcataacattgaggccagcaatagcacccgcatc 246  Q
    |||||||||||||||||| || || ||||| || ||||||| ||| | ||||||||| ||||||||||| ||||| |||||    
T  8585638 gtcaaggccatatgcaatagctgcagcagtgggttcattgattatcctcataacattaaggccagcaatggcaccagcatc 8585558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 674 - 733
Target Start/End: Original strand, 2407345 - 2407404
Alignment:
Q  674 ccccgtaagtaatacaatcttgggattttggtcccttgtaaaaaacaataacaaatcagc 733  Q
    |||| ||||||  ||||||||| |||||||||||| | ||||||||||||||||||||||    
T  2407345 ccccctaagtatcacaatcttgcgattttggtcccctataaaaaacaataacaaatcagc 2407404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 166 - 245
Target Start/End: Original strand, 8628768 - 8628847
Alignment:
Q  166 gtcaaggccatatgcaattgcagctgcagtaggctcattgagtattcgcataacattgaggccagcaatagcacccgcat 245  Q
    |||||||||||||||||| || || ||||| || ||||||| ||| | ||||||||| ||||||||||| ||||| ||||    
T  8628768 gtcaaggccatatgcaatagctgcagcagtggggtcattgattatcctcataacattaaggccagcaatggcaccagcat 8628847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 687 - 733
Target Start/End: Original strand, 7875716 - 7875762
Alignment:
Q  687 acaatcttgggattttggtcccttgtaaaaaacaataacaaatcagc 733  Q
    ||||||||| |||||||||||| | ||||||||||||||||||||||    
T  7875716 acaatcttgcgattttggtcccctataaaaaacaataacaaatcagc 7875762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 166 - 240
Target Start/End: Complemental strand, 27830807 - 27830733
Alignment:
Q  166 gtcaaggccatatgcaattgcagctgcagtaggctcattgagtattcgcataacattgaggccagcaatagcacc 240  Q
    |||||||||||||||||| || || |||||||||||  | | ||| ||||||||||| ||||||||||| |||||    
T  27830807 gtcaaggccatatgcaatagctgcagcagtaggctcgcttattatccgcataacattaaggccagcaatggcacc 27830733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 173 - 235
Target Start/End: Complemental strand, 29577594 - 29577532
Alignment:
Q  173 ccatatgcaattgcagctgcagtaggctcattgagtattcgcataacattgaggccagcaata 235  Q
    |||||||||| |||||| ||||| || ||||||| ||| ||||| ||||||||||||||||||    
T  29577594 ccatatgcaagtgcagcagcagttggttcattgattatccgcattacattgaggccagcaata 29577532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 166 - 247
Target Start/End: Original strand, 8654686 - 8654767
Alignment:
Q  166 gtcaaggccatatgcaattgcagctgcagtaggctcattgagtattcgcataacattgaggccagcaatagcacccgcatct 247  Q
    |||||||||||||||||| || || |||||||| ||||||||||| || || || || || |||||||| ||||| ||||||    
T  8654686 gtcaaggccatatgcaatagctgcggcagtaggttcattgagtatccgaatgacgttaagtccagcaatggcaccagcatct 8654767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 166 - 247
Target Start/End: Original strand, 8667655 - 8667736
Alignment:
Q  166 gtcaaggccatatgcaattgcagctgcagtaggctcattgagtattcgcataacattgaggccagcaatagcacccgcatct 247  Q
    |||||||||||||||||| || || |||||||| ||||||| ||| || || ||||| || |||||||||| ||| ||||||    
T  8667655 gtcaaggccatatgcaatagctgccgcagtaggttcattgattatccgaatgacattaagtccagcaatagtaccagcatct 8667736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 167 - 247
Target Start/End: Original strand, 6789749 - 6789829
Alignment:
Q  167 tcaaggccatatgcaattgcagctgcagtaggctcattgagtattcgcataacattgaggccagcaatagcacccgcatct 247  Q
    ||||||||||||||||  ||||| || || || ||||||| |||||| |||||||| || |||||||| ||||| ||||||    
T  6789749 tcaaggccatatgcaagagcagcagctgttggttcattgattattcgtataacattaagaccagcaatggcaccagcatct 6789829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 166 - 246
Target Start/End: Complemental strand, 8671562 - 8671482
Alignment:
Q  166 gtcaaggccatatgcaattgcagctgcagtaggctcattgagtattcgcataacattgaggccagcaatagcacccgcatc 246  Q
    |||||||||||||||||| || || |||||||| ||||||| ||| || || ||||| || |||||||||| ||| |||||    
T  8671562 gtcaaggccatatgcaatagctgcagcagtaggttcattgattatccgaatgacattaagtccagcaatagtaccagcatc 8671482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 673 - 733
Target Start/End: Original strand, 40352657 - 40352717
Alignment:
Q  673 accccgtaagtaatacaatcttgggattttggtcccttgtaaaaaacaataacaaatcagc 733  Q
    ||||| ||||||  ||||||||| |||||||||| | | ||||||||||||||||||||||    
T  40352657 accccctaagtatcacaatcttgcgattttggtcgcctataaaaaacaataacaaatcagc 40352717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 173 - 247
Target Start/End: Original strand, 3147515 - 3147589
Alignment:
Q  173 ccatatgcaattgcagctgcagtaggctcattgagtattcgcataacattgaggccagcaatagcacccgcatct 247  Q
    ||||| ||||| || || |||||||| ||||||| ||| ||||||| ||| |||||||||||| |||| ||||||    
T  3147515 ccatacgcaatagctgcagcagtaggttcattgattatccgcataatattaaggccagcaataacaccagcatct 3147589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 169 - 247
Target Start/End: Complemental strand, 7877662 - 7877584
Alignment:
Q  169 aaggccatatgcaattgcagctgcagtaggctcattgagtattcgcataacattgaggccagcaatagcacccgcatct 247  Q
    ||||||||||||||  ||||| ||||| || ||||| | ||| ||||||||||||||||| ||||  ||||| ||||||    
T  7877662 aaggccatatgcaagggcagcagcagttggttcattaattatccgcataacattgaggccggcaactgcaccagcatct 7877584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 169 - 247
Target Start/End: Original strand, 8538275 - 8538353
Alignment:
Q  169 aaggccatatgcaattgcagctgcagtaggctcattgagtattcgcataacattgaggccagcaatagcacccgcatct 247  Q
    |||||| |||||||  ||||| || ||||| ||||||| ||| ||||| |||||||||||||||||  |||| ||||||    
T  8538275 aaggccgtatgcaagagcagcagctgtaggttcattgattatccgcattacattgaggccagcaatgacaccagcatct 8538353  T

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Target: chr7; HSP #19
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 358 - 466
Target Start/End: Original strand, 8647305 - 8647410
Alignment:
Q  358 catcgatgatatttcttcagcagcaaaatgcttttcctcgtcattatagttaacaacaatcatgggtttgtcattcaggtcaccaattactttgaatggc 457  Q
    ||||||||||||||| ||||||  | || |||| || ||  | || || ||||||| ||||||||||||||||||||   | ||||| || |||||||||    
T  8647305 catcgatgatatttcctcagcacaataacgcttctcttcacccttgtatttaacaataatcatgggtttgtcattca---ccccaatgaccttgaatggc 8647401  T
Q  458 cacaacttc 466  Q
    |||||||||    
T  8647402 cacaacttc 8647410  T

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Target: chr7; HSP #20
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 687 - 729
Target Start/End: Original strand, 41415672 - 41415714
Alignment:
Q  687 acaatcttgggattttggtcccttgtaaaaaacaataacaaat 729  Q
    ||||||||| |||||||| ||||| ||||||||||||||||||    
T  41415672 acaatcttgcgattttggccccttataaaaaacaataacaaat 41415714  T

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Target: chr7; HSP #21
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 415 - 524
Target Start/End: Original strand, 3147757 - 3147866
Alignment:
Q  415 aatcatgggtttgtcattcaggtcaccaattactttgaatggccacaacttcacatcactttgtactatgggatcgcaaaatttccgaccaattagcctc 514  Q
    ||||||||||||||||||||   | | ||| || ||||||||||||||| ||| |||| |||| || |  | ||| | ||| |||| |||||||| ||||    
T  3147757 aatcatgggtttgtcattcactccgcaaatgaccttgaatggccacaacatcatatcattttgaacaacagaatcaccaaacttcctaccaattaacctc 3147856  T
Q  515 tttgcatcta 524  Q
    ||||||||||    
T  3147857 tttgcatcta 3147866  T

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Target: scaffold0734 (Bit Score: 39; Significance: 0.000000000001; HSPs: 2)
Name: scaffold0734
Description:

Target: scaffold0734; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 679 - 733
Target Start/End: Original strand, 1908 - 1962
Alignment:
Q  679 taagtaatacaatcttgggattttggtcccttgtaaaaaacaataacaaatcagc 733  Q
    ||||||| ||||||||| |||||||||||| | ||||||||||||||||||||||    
T  1908 taagtaacacaatcttgagattttggtcccctataaaaaacaataacaaatcagc 1962  T

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Target: scaffold0734; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 496 - 550
Target Start/End: Original strand, 6714 - 6770
Alignment:
Q  496 tttccgaccaattagcctctttgcatctacaaaacaaa-ag-agagttgtgtacact 550  Q
    ||||| |||||||||||||||||||||||||||||||| || |||||||||||||||    
T  6714 tttccaaccaattagcctctttgcatctacaaaacaaacagaagagttgtgtacact 6770  T

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Target: chr4 (Bit Score: 37; Significance: 0.00000000002; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 167 - 247
Target Start/End: Complemental strand, 9335822 - 9335742
Alignment:
Q  167 tcaaggccatatgcaattgcagctgcagtaggctcattgagtattcgcataacattgaggccagcaatagcacccgcatct 247  Q
    ||||||||||||||||| || || |||||||| ||||||| ||| || || ||||| ||||||||||||| ||| ||||||    
T  9335822 tcaaggccatatgcaatagctgcagcagtaggttcattgattatccgaatgacattaaggccagcaatagtaccagcatct 9335742  T

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Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 167 - 246
Target Start/End: Original strand, 30775489 - 30775568
Alignment:
Q  167 tcaaggccatatgcaattgcagctgcagtaggctcattgagtattcgcataacattgaggccagcaatagcacccgcatc 246  Q
    ||||| ||||||||||| || |||||||| |||||||| | ||||| ||||||||| || |||||||| ||||| |||||    
T  30775489 tcaagtccatatgcaatagctgctgcagtgggctcattaattattctcataacattaagaccagcaatggcaccagcatc 30775568  T

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Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 166 - 247
Target Start/End: Original strand, 35132684 - 35132765
Alignment:
Q  166 gtcaaggccatatgcaattgcagctgcagtaggctcattgagtattcgcataacattgaggccagcaatagcacccgcatct 247  Q
    |||||||||||||||||  || || |||||||| ||||| | || || |||||||||| | |||||||||||||| ||||||    
T  35132684 gtcaaggccatatgcaaccgctgcggcagtaggttcattcattactctcataacattgggaccagcaatagcaccagcatct 35132765  T

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Target: chr2 (Bit Score: 34; Significance: 0.000000001; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 166 - 247
Target Start/End: Original strand, 7542462 - 7542543
Alignment:
Q  166 gtcaaggccatatgcaattgcagctgcagtaggctcattgagtattcgcataacattgaggccagcaatagcacccgcatct 247  Q
    |||||||||||||||||  || || |||||||| ||||| | |   | ||||||||||||||||||||| ||||||||||||    
T  7542462 gtcaaggccatatgcaacagctgcggcagtaggttcattcattgccctcataacattgaggccagcaatggcacccgcatct 7542543  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 166 - 246
Target Start/End: Complemental strand, 16661924 - 16661844
Alignment:
Q  166 gtcaaggccatatgcaattgcagctgcagtaggctcattgagtattcgcataacattgaggccagcaatagcacccgcatc 246  Q
    |||||||||||||||||| || |||||||| || ||||||| ||| | || ||| || ||||||||||| ||||| |||||    
T  16661924 gtcaaggccatatgcaatagctgctgcagtgggttcattgattatcctcacaacgttaaggccagcaatggcaccagcatc 16661844  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 166 - 247
Target Start/End: Complemental strand, 16657449 - 16657368
Alignment:
Q  166 gtcaaggccatatgcaattgcagctgcagtaggctcattgagtattcgcataacattgaggccagcaatagcacccgcatct 247  Q
    |||||| ||||||||||| || || |||||||| |||||||  ||||| || ||||| |||||||| || ||||| ||||||    
T  16657449 gtcaagaccatatgcaatagctgcagcagtaggttcattgataattcgaatgacattaaggccagcgatggcaccagcatct 16657368  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 687 - 731
Target Start/End: Original strand, 5003527 - 5003571
Alignment:
Q  687 acaatcttgggattttggtcccttgtaaaaaacaataacaaatca 731  Q
    ||||||||| ||||||| |||||| ||||||||||||||||||||    
T  5003527 acaatcttgcgattttgatcccttataaaaaacaataacaaatca 5003571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 33; Significance: 0.000000004; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 407 - 465
Target Start/End: Original strand, 15595516 - 15595571
Alignment:
Q  407 ttaacaacaatcatgggtttgtcattcaggtcaccaattactttgaatggccacaactt 465  Q
    ||||||| ||||||||||||||||||||   ||||||| || |||||||||||||||||    
T  15595516 ttaacaataatcatgggtttgtcattca---caccaatgaccttgaatggccacaactt 15595571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 166 - 246
Target Start/End: Complemental strand, 34466725 - 34466645
Alignment:
Q  166 gtcaaggccatatgcaattgcagctgcagtaggctcattgagtattcgcataacattgaggccagcaatagcacccgcatc 246  Q
    |||||| ||||||||||| || || ||||| || ||||||| |||| ||| |||||| ||||||||||||| ||| |||||    
T  34466725 gtcaagtccatatgcaatagctgcagcagtgggttcattgattatttgcaaaacattaaggccagcaatagtaccagcatc 34466645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 688 - 733
Target Start/End: Original strand, 33096059 - 33096104
Alignment:
Q  688 caatcttgggattttggtcccttgtaaaaaacaataacaaatcagc 733  Q
    ||||||||  ||||||||||||| ||||||| ||||||||||||||    
T  33096059 caatcttgcaattttggtcccttataaaaaataataacaaatcagc 33096104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 687 - 733
Target Start/End: Original strand, 18896459 - 18896505
Alignment:
Q  687 acaatcttgggattttggtcccttgtaaaaaacaataacaaatcagc 733  Q
    ||||||||| |||||||||||| | ||||||||||||| ||||||||    
T  18896459 acaatcttgcgattttggtcccctataaaaaacaataataaatcagc 18896505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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