View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15025_low_10 (Length: 534)

Name: NF15025_low_10
Description: NF15025
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15025_low_10
NF15025_low_10
[»] chr4 (12 HSPs)
chr4 (1-534)||(5034761-5035284)
chr4 (376-534)||(2533820-2533975)
chr4 (376-513)||(2525262-2525396)
chr4 (180-312)||(2533112-2533246)
chr4 (385-505)||(2490641-2490761)
chr4 (395-505)||(2477091-2477201)
chr4 (21-69)||(2489582-2489630)
chr4 (116-170)||(2489687-2489740)
chr4 (111-172)||(5095577-5095638)
chr4 (385-425)||(2460107-2460147)
chr4 (386-486)||(2467029-2467129)
chr4 (386-486)||(5102520-5102620)


Alignment Details
Target: chr4 (Bit Score: 459; Significance: 0; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 459; E-Value: 0
Query Start/End: Original strand, 1 - 534
Target Start/End: Original strand, 5034761 - 5035284
Alignment:
Q  1 taagaatataacatccttatatcatctgaagtagtaaattttccttccagttctgccaaaactatataaaaatcaagtcatctaattcaatgttgtgcgg 100  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  5034761 taagaatataacatccttagatcatctgaagtagtaaattttccttccagttctgccaaaactaaataaaaatcaagtcatctaattcaatgttgtgcgg 5034860  T
Q  101 atgcctaatgtgaacagttgcacccgaatccttacttgaataccactatttgttctacaagaaaatatatgacttgcgaatagacctattgtgtgccctg 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||  |||||||||||    
T  5034861 atgcctaatgtgaacagttgcacccgaatccttacttgaataccattatttgttctacaagaaaatatatgacttgcgaatagacctggtgtgtgccctg 5034960  T
Q  201 caaatcggtttccattgtgcaaattagtttttgtagcaggttttaatcgaaatcttgcattcatcactggtgaggcaagttcagcctttattctcctttc 300  Q
    ||||||||||||||||||||||||||||||||||||          |||||||||||||||||| ||| |||||||||||||||| ||||||||||||||    
T  5034961 caaatcggtttccattgtgcaaattagtttttgtag----------tcgaaatcttgcattcattactagtgaggcaagttcagcttttattctcctttc 5035050  T
Q  301 cctgcaactggttcttgaagctcattgatattgtagaggaggacgaggaccacgaaacgcatatcttgcaacacgaccaccaaccactttgacctcttga 400  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||    
T  5035051 cctgcaactggttcttgaagctcattgatattgtagaggaggacgaggaccacgaaacgcatatcgagcaacacgaccaccaaccactttgacctcttga 5035150  T
Q  401 agaaggtcacagctcttgcagagattcttaattgagtgtccaccgacgatattactagttaaagcaatcctgcggagtttgggaagcgctaagaattgat 500  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5035151 agaaggtcacagctcttgcagagattcttaattgagtgtccaccgacgatattactagttaaagcaatcctgcggagtttgggaagcgctaagaattgat 5035250  T
Q  501 catcactatctatagcacaattatggggacaacc 534  Q
    ||||||||||||||||||||||||||||||||||    
T  5035251 catcactatctatagcacaattatggggacaacc 5035284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 376 - 534
Target Start/End: Original strand, 2533820 - 2533975
Alignment:
Q  376 accaccaaccactttgacctcttgaagaaggtcacagctcttgcagagattcttaattgagtgtccaccgacgatattactagttaaagcaatcctgcgg 475  Q
    ||||||||||||||||| |||||||||   ||||||| ||||||||||||| |||||||||||  ||| ||||||||||  |||||||||||||||||||    
T  2533820 accaccaaccactttgagctcttgaag---gtcacagttcttgcagagatttttaattgagtgctcactgacgatattatgagttaaagcaatcctgcgg 2533916  T
Q  476 agtttgggaagcgctaagaattgatcatcactatctatagcacaattatggggacaacc 534  Q
    |||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||    
T  2533917 agtttgggaagcgccaagaattgatcatcactatctatcgcacaattatggggacaacc 2533975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 376 - 513
Target Start/End: Original strand, 2525262 - 2525396
Alignment:
Q  376 accaccaaccactttgacctcttgaagaaggtcacagctcttgcagagattcttaattgagtgtccaccgacgatattactagttaaagcaatcctgcgg 475  Q
    |||||||||||||||||||||||||||   ||||||| || ||||||||||||||| |||||||  |||  ||||| ||  |||||||||||||||||||    
T  2525262 accaccaaccactttgacctcttgaag---gtcacagttcctgcagagattcttaactgagtgttgacccgcgatagtatgagttaaagcaatcctgcgg 2525358  T
Q  476 agtttgggaagcgctaagaattgatcatcactatctat 513  Q
    |||||||||||||| |||||||||||||||||||||||    
T  2525359 agtttgggaagcgccaagaattgatcatcactatctat 2525396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 180 - 312
Target Start/End: Original strand, 2533112 - 2533246
Alignment:
Q  180 atagacctattgtgtgccctgcaaatcgg--tttccattgtgcaaattagtttttgtagcaggttttaatcgaaatcttgcattcatcactggtgaggca 277  Q
    |||||||| |||||||||||||||||| |  | ||  ||||||||||||||||||| |||||||||||||||||||| ||||||||||||| ||||||||    
T  2533112 atagacctgttgtgtgccctgcaaatcagcatctcatttgtgcaaattagtttttgcagcaggttttaatcgaaatcctgcattcatcacttgtgaggca 2533211  T
Q  278 agttcagcctttattctcctttccctgcaactggt 312  Q
     |||||||  ||||||||| |||||||||| ||||    
T  2533212 tgttcagctcttattctccattccctgcaagtggt 2533246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 385 - 505
Target Start/End: Original strand, 2490641 - 2490761
Alignment:
Q  385 cactttgacctcttgaagaaggtcacagctcttgcagagattcttaattgagtgtccaccgacgatattactagttaaagcaatcctgcggagtttggga 484  Q
    ||||||| |||||||||||||||||||| ||||||||||||  |||| ||||||   ||| | || ||||  || |||||||||| ||||||||||||||    
T  2490641 cactttggcctcttgaagaaggtcacagttcttgcagagatctttaactgagtgattaccaatgaaattaagagataaagcaatcttgcggagtttggga 2490740  T
Q  485 agcgctaagaattgatcatca 505  Q
    ||| | || ||||||||||||    
T  2490741 agcaccaataattgatcatca 2490761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 395 - 505
Target Start/End: Original strand, 2477091 - 2477201
Alignment:
Q  395 tcttgaagaaggtcacagctcttgcagagattcttaattgagtgtccaccgacgatattactagttaaagcaatcctgcggagtttgggaagcgctaaga 494  Q
    |||||||||||||| ||| ||||||||||||  | ||| ||  ||| ||| | || ||||  || |||||||||| ||||||||||||||||||| || |    
T  2477091 tcttgaagaaggtcgcagttcttgcagagatagtcaatagatcgtcgacccatgaaattaggagataaagcaatcttgcggagtttgggaagcgccaaca 2477190  T
Q  495 attgatcatca 505  Q
    |||||||||||    
T  2477191 attgatcatca 2477201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 21 - 69
Target Start/End: Original strand, 2489582 - 2489630
Alignment:
Q  21 atcatctgaagtagtaaattttccttccagttctgccaaaactatataa 69  Q
    ||||||||||||||||||||||| ||| |||||||||| |||| |||||    
T  2489582 atcatctgaagtagtaaattttcattcaagttctgccagaactttataa 2489630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 116 - 170
Target Start/End: Original strand, 2489687 - 2489740
Alignment:
Q  116 agttgcacccgaatccttacttgaataccactatttgttctacaagaaaatatat 170  Q
    |||||||||| ||||||||||||| |||| || |||||||||||| |||||||||    
T  2489687 agttgcacccaaatccttacttgactacctctgtttgttctacaa-aaaatatat 2489740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 111 - 172
Target Start/End: Complemental strand, 5095638 - 5095577
Alignment:
Q  111 tgaacagttgcacccgaatccttacttgaataccactatttgttctacaagaaaatatatga 172  Q
    ||||||||||||||  ||||  ||||||| |||| ||||||||||| |||||||||| ||||    
T  5095638 tgaacagttgcaccaaaatctgtacttgactacctctatttgttcttcaagaaaatacatga 5095577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 385 - 425
Target Start/End: Original strand, 2460107 - 2460147
Alignment:
Q  385 cactttgacctcttgaagaaggtcacagctcttgcagagat 425  Q
    |||||||||||||||||||||||||||  ||||||| ||||    
T  2460107 cactttgacctcttgaagaaggtcacaattcttgcaaagat 2460147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 386 - 486
Target Start/End: Original strand, 2467029 - 2467129
Alignment:
Q  386 actttgacctcttgaagaaggtcacagctcttgcagagattcttaattgagtgtccaccgacgatattactagttaaagcaatcctgcggagtttgggaa 485  Q
    |||||||| |||||||||||| ||||| || |||||||||  ||||| || || | ||| |  | ||||| || |||||||||| |||||||||| ||||    
T  2467029 actttgacgtcttgaagaaggccacagttcctgcagagatagttaatagattggcaaccaataaaattacgagataaagcaatcttgcggagttttggaa 2467128  T
Q  486 g 486  Q
    |    
T  2467129 g 2467129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 386 - 486
Target Start/End: Complemental strand, 5102620 - 5102520
Alignment:
Q  386 actttgacctcttgaagaaggtcacagctcttgcagagattcttaattgagtgtccaccgacgatattactagttaaagcaatcctgcggagtttgggaa 485  Q
    |||||||| |||||||||||||||||| || |||| ||||  ||||| || ||   ||| | || ||||| || |||| ||||| |||||||||||||||    
T  5102620 actttgacatcttgaagaaggtcacagttcctgcaaagatggttaatagattgggtacctatgaaattacgagataaaacaatcttgcggagtttgggaa 5102521  T
Q  486 g 486  Q
    |    
T  5102520 g 5102520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University