View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15025_low_11 (Length: 527)
Name: NF15025_low_11
Description: NF15025
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15025_low_11 |
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Alignment Details
Target: chr2 (Bit Score: 344; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 1 - 509
Target Start/End: Complemental strand, 16560580 - 16560095
Alignment:
| Q |
1 |
cattatttcttatatcttaaagagaagacaattgttgcgcagacaagattatttctcgagggatctaaagtaatggttttgtttggtggattcaatctct |
100 |
Q |
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| T |
16560580 |
cattatttctcatatcttga-gagaagacaattgttgcgcagacaagattatttctcgtgggatctaaagtaatggttttgtttggtggattcaatctct |
16560482 |
T |
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| Q |
101 |
tc--gtgttttagattttgttaaccgaaataggtcggagcttccaggattatcatttatgttgatgtttttcaagggcttgaacttctatttactatgca |
198 |
Q |
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| T |
16560481 |
tcttgtgttttagattttgttaaccaaaataggtcggagcttccaggattatcatttatgttgatgtttttcaagggcttgaacttctatttactatgca |
16560382 |
T |
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| Q |
199 |
atatctttttcttcgccaatgttttacccctttaagtattttggttagacgtttaatgagacagatgttattaaagtccttggctgtttactttgggttt |
298 |
Q |
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| T |
16560381 |
atatctttttcttcgccaatattttatccctttaag---------tagacgtttaatgagacagatgttattaaagtccttggctgtttactttgggttt |
16560291 |
T |
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| Q |
299 |
tggcctagtcgcgtaatgttattctctacttttattttgaat-nnnnnnnnttaatcaatgatttactaggatgttgttgttgaattatgcttttcatta |
397 |
Q |
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| T |
16560290 |
tggcctagtcgcgtaatgttatcctctacttttattttgaataaaaaaaaattaatcaatgatttactaggatgttgttgttgaattatccttttcatta |
16560191 |
T |
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| Q |
398 |
gaaaatcttatgaaaaattgaaaattattactaatgaaaatgttatggctcttaatccgatctttcttaaaataaaattgaaaaggaattttggctccaa |
497 |
Q |
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| T |
16560190 |
gaaaatcttatgaaaaat----------------tgaaaatgttatggctcttaatccgatctttcttaaaataaaattgaaaaggaattttggctccaa |
16560107 |
T |
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