View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15025_low_16 (Length: 450)
Name: NF15025_low_16
Description: NF15025
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15025_low_16 |
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| [»] chr1 (3 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 309; Significance: 1e-174; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 104 - 450
Target Start/End: Complemental strand, 3885034 - 3884689
Alignment:
| Q |
104 |
cgcacattgatgtatttcttttgaatgagaatccgatgctctttagtgcttactttgaaaaagcaatattccacttaccatatcaatatttttgtgttgc |
203 |
Q |
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| T |
3885034 |
cgcacattgatgtatttcttttgaatgagaatccgatgctctttagtgcttactttgaaaaagcaatattccacttaccatatcaatatttttgtgttgc |
3884935 |
T |
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| Q |
204 |
aatttcatcatatcatataaacatatatacattttaattagcaacacnnnnnnntttccccgaacataattttttatcatctaaatcaatcttttgaatg |
303 |
Q |
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| T |
3884934 |
aatttcatcatatcatataaacatatatacattttaattagcaacacaaaaaa-tttccccgaacataattttttatcatctaaatcaatcttttgaatg |
3884836 |
T |
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| Q |
304 |
gaacttgaagctaataggaggggaagcaaattttcttcatttgagagagcagcagccataagcttggtagttctagctgtggcttctcctctatacatag |
403 |
Q |
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| T |
3884835 |
gaacttgaagctaataggaggggaagcaaattttcttcatttgagagagtagcagccataagcttggtagttctagctgtggcttctcctctatacatag |
3884736 |
T |
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| Q |
404 |
atcacagatcagagagtgaattgaaagatgatgaacaaccaattagt |
450 |
Q |
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| T |
3884735 |
atcacagatcagagagtgaattggaagatgatgaacaacctattagt |
3884689 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 280 - 450
Target Start/End: Complemental strand, 3874331 - 3874161
Alignment:
| Q |
280 |
tcatctaaatcaatcttttgaatggaacttgaagctaataggaggggaagcaaattttcttcatttgagagagcagcagccataagcttggtagttctag |
379 |
Q |
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| T |
3874331 |
tcatctaaatcaatcttctgaatggaacctgaagctagtaggaggggtcacaaattttcatcttatgagagagtagcagccataagcttagtagttctag |
3874232 |
T |
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| Q |
380 |
ctgtggcttctcctctatacatagatcacagatcagagagtgaattgaaagatgatgaacaaccaattagt |
450 |
Q |
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| T |
3874231 |
ctgtggcttctcctctatacatagatcacagatcagagagtgagttggaagatgatgaacaaccaattagt |
3874161 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 129 - 250
Target Start/End: Complemental strand, 3874462 - 3874337
Alignment:
| Q |
129 |
tgagaatccgatgctctttagt----gcttactttgaaaaagcaatattccacttaccatatcaatatttttgtgttgcaatttcatcatatcatat-aa |
223 |
Q |
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| T |
3874462 |
tgagaatccgatgctctttagttagtgcatactttgaaaa-gcaatattccacttaccatatcaacatttttgtgttgcaattccatcatatcatatcat |
3874364 |
T |
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| Q |
224 |
acatatatacattttaattagcaacac |
250 |
Q |
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| T |
3874363 |
atatacatacattttaattaacaacac |
3874337 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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