View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15025_low_17 (Length: 444)
Name: NF15025_low_17
Description: NF15025
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15025_low_17 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 401; Significance: 0; HSPs: 15)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 401; E-Value: 0
Query Start/End: Original strand, 19 - 435
Target Start/End: Original strand, 35335754 - 35336170
Alignment:
| Q |
19 |
tgagttgatttgagttgtgtttgagttaggattggagagttatatataactagaagaaaagctgttgagctgttctagcacaagcaaaccacgcaggaag |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35335754 |
tgagttgatttgagttgtgtttgagttaggattggagagttatatataactagaagaaaagctgttgagctgttctagcacaagcaaaccacgcaggaag |
35335853 |
T |
|
| Q |
119 |
tgtgtgtgtttgcttaagttgtgagcatggctcggtgcctgcatgtctaatggcatcttgtgcagccacattggcaattgtctttacaattcaacttaca |
218 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35335854 |
tgtgtgtgtttgcttaaggtgtgagcatggctcggtgcctgcatgtgtaatggcatcttgtgtagccacattggcaattgtctttacaattcaacttaca |
35335953 |
T |
|
| Q |
219 |
cgttggaaaagaagcaaagaatcaagaatattgacaaaatagaatgtttgagtggatgcatataatggttgggaacatataaagtgtttgatgtagaaag |
318 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35335954 |
cgttggaaaagaagcaaagaatcaagaatattgacaaaataaaatgtttgagtggatgcatataatggttgggaacatataaagtgtttgatgtagaaag |
35336053 |
T |
|
| Q |
319 |
tggaacgacaagttgatcgattcatttagctaggaacttttattggttagtcaatggctttaagttttgtcatttcttctgtttatacaacgctgtcctg |
418 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35336054 |
tggaacgacaagttgatcgattcatttagctaggaacttttattggttagtcaatggctttaagttttgtcatttcttctgtttatacaacgctgtcctg |
35336153 |
T |
|
| Q |
419 |
tgatatatgatattctt |
435 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
35336154 |
tgatatatgatattctt |
35336170 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 167; E-Value: 3e-89
Query Start/End: Original strand, 28 - 390
Target Start/End: Complemental strand, 35348078 - 35347695
Alignment:
| Q |
28 |
ttgagttgtgtttgagttaggattggagagtt--------atatataactagaagaaaagctgttgagctgttctagcacaagcaaaccacgcaggaagt |
119 |
Q |
| |
|
||||| |||||||||||||||||||||||||| ||||||||| |||||| ||| ||||||| |||||| |||||||||||||| || ||||| |
|
|
| T |
35348078 |
ttgagctgtgtttgagttaggattggagagtttgtgtgttatatataacaagaagagaagttgttgagtagttctaacacaagcaaaccacacaagaagt |
35347979 |
T |
|
| Q |
120 |
gtgtgtgtttgcttaagttgtgagcatggctcggtgcctgcatgtctaat--ggcatcttgtgcagccacattggcaattgtctttacaattcaactta- |
216 |
Q |
| |
|
|||| ||||||||||| | ||||||||||| |||||||||||| |||| || |||||||||||||||||||||||||||| ||||||||| | || |
|
|
| T |
35347978 |
gtgtaagtttgcttaaggtatgagcatggctacgtgcctgcatgtgtaatatggggtcttgtgcagccacattggcaattgtctctacaattcagcatat |
35347879 |
T |
|
| Q |
217 |
---cacgt-tggaaaagaagcaaagaatcaagaatattgacaaaatagaatgtttgagtggatgcatataatggttgggaacat-----ataaagtgttt |
307 |
Q |
| |
|
||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||| |
|
|
| T |
35347878 |
atacacgtatggaaaagaagcaaagactcaagaatattgacaaaatagaatgtttgagtggatgcatataattgttgggaacatacagcataaagtgttg |
35347779 |
T |
|
| Q |
308 |
gatgtagaaagtggaacgacaagttgatcgattcatttagctaggaacttttattggttagt-caatggctttaagttttgtca |
390 |
Q |
| |
|
||||| |||||||||| |||||||| ||||||||||||||||||||| |||||||||||||| ||| | ||||| ||||||||| |
|
|
| T |
35347778 |
gatgtggaaagtggaatgacaagttaatcgattcatttagctaggaatttttattggttagtccaaggcctttatgttttgtca |
35347695 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 143; E-Value: 6e-75
Query Start/End: Original strand, 28 - 350
Target Start/End: Original strand, 35374525 - 35374850
Alignment:
| Q |
28 |
ttgagttgtgtttgagttaggattggagagtt--------atatataactagaagaaaagctgttg-agctgttctagcacaagcaaaccacgcaggaag |
118 |
Q |
| |
|
||||| |||||||||||||||||||||||||| ||||||||| | |||| | ||||| || ||||||| |||||||||||||| || |||| |
|
|
| T |
35374525 |
ttgagctgtgtttgagttaggattggagagtttgtgtgttatatataacaaaaagagttgttgttggagttgttctaacacaagcaaaccacacaagaag |
35374624 |
T |
|
| Q |
119 |
tgtgtgtgtttgcttaagttgtgagcatggctcggtgcctgcatgtctaatggcatcttgtgcagccacattggcaattgtctttacaattcaacttaca |
218 |
Q |
| |
|
||||| |||||||||||| ||||||||| ||| |||||||||||| |||| | ||||||||||||||||||||||||||||||||| ||||| | |||| |
|
|
| T |
35374625 |
tgtgtatgtttgcttaaggtgtgagcatacctcagtgcctgcatgtgtaatagaatcttgtgcagccacattggcaattgtctttac-attcagcataca |
35374723 |
T |
|
| Q |
219 |
cgttggaaa-agaagcaaagaatcaagaatattgacaaaatagaatgtttgagtggatgcatataatggttgggaacatataaagtgtttgatgtagaaa |
317 |
Q |
| |
|
||||||||| || ||| ||||||||||||||||||||||||||||||||||||||||||| | |||||||||| |||||||||||||| |||||||| | |
|
|
| T |
35374724 |
cgttggaaatagcagctaagaatcaagaatattgacaaaatagaatgtttgagtggatgc--acaatggttggg-acatataaagtgttggatgtagata |
35374820 |
T |
|
| Q |
318 |
gtggaacgacaagttgatcgattcatttagcta |
350 |
Q |
| |
|
||||| ||||||||||||||||||||||||| |
|
|
| T |
35374821 |
gtgga---acaagttgatcgattcatttagcta |
35374850 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 131; E-Value: 8e-68
Query Start/End: Original strand, 59 - 286
Target Start/End: Original strand, 35368411 - 35368641
Alignment:
| Q |
59 |
tatatataactagaagaaaagctgttg-agctgttctagcacaagcaaaccacgcaggaagtgtgtgtgtttgcttaa-gttgtgagcatggctcggtgc |
156 |
Q |
| |
|
||||||||||||||||| ||| ||||| || ||||||| |||||||||||||| || ||||||||| ||||||||||| | ||||||||||| |||| |
|
|
| T |
35368411 |
tatatataactagaagataagttgttggagttgttctaacacaagcaaaccacacaagaagtgtgtatgtttgcttaaaggaatgagcatggctacgtgc |
35368510 |
T |
|
| Q |
157 |
ctgcatgtctaatggcatcttgtgcagccacattggcaattgtctttacaattcaacttacacgttggaaa-agaagcaaagaatcaagaatattgacaa |
255 |
Q |
| |
|
|||||||| ||||||||| ||| |||||||||||||||||||||||||||||||| |||| | |||||||| || ||||||||||||||||||||||||| |
|
|
| T |
35368511 |
ctgcatgtgtaatggcatattgggcagccacattggcaattgtctttacaattcagcttaaatgttggaaatagcagcaaagaatcaagaatattgacaa |
35368610 |
T |
|
| Q |
256 |
aatagaatgtttgagtggatgcatataatgg |
286 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
35368611 |
aatagaatgtttgagtggatgcatataatgg |
35368641 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 128; E-Value: 5e-66
Query Start/End: Original strand, 89 - 306
Target Start/End: Original strand, 35346337 - 35346554
Alignment:
| Q |
89 |
tgttctagcacaagcaaaccacgcaggaagtgt--gtgtgtttgcttaagttgtgagcatggctcggtgcctgcatgtctaatggcatcttgtgcagcca |
186 |
Q |
| |
|
||||||| |||||| ||||||| || ||||||| ||||||||||||||| ||||||||||||||| ||||||||||| ||||| |||||||||||||| |
|
|
| T |
35346337 |
tgttctatcacaagtaaaccacacaagaagtgtgtgtgtgtttgcttaaggtgtgagcatggctcgatgcctgcatgtgcaatgggatcttgtgcagcca |
35346436 |
T |
|
| Q |
187 |
cattggcaattgtctttacaattcaacttacacgttggaaaa-gaagcaaagaatcaagaatattgacaaaatagaatgtttgagtggatgcatataatg |
285 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||| | |||| ||||||||||||| || |||||||||||||||||||||||||||||| |
|
|
| T |
35346437 |
cattggcaattgtctttacaattcagcttacacgttggaaaatgcagcatagaatcaagaata---accaaatagaatgtttgagtggatgcatataata |
35346533 |
T |
|
| Q |
286 |
gttgggaacatataaagtgtt |
306 |
Q |
| |
|
|||||||||||||||| |||| |
|
|
| T |
35346534 |
gttgggaacatataaaatgtt |
35346554 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 28 - 322
Target Start/End: Original strand, 35355898 - 35356201
Alignment:
| Q |
28 |
ttgagttgtgtttgagttaggattggagagtt--------atatataactagaagaaaagctgttg-agctgttctagcacaagcaaaccacgcaggaag |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||| | |||| | ||||| || ||||||| |||||| ||||||| || |||| |
|
|
| T |
35355898 |
ttgagttgtgtttgagttaggattggagagtttgtgtgttatatataacaaaaagagt-gttgttggagttgttctaacacaagtaaaccacacaagaag |
35355996 |
T |
|
| Q |
119 |
tgtgtgtgtttgcttaagttgtgagcatggctcggtgcctgcatgtctaatggcatcttgtgcagccacattggcaattgtctttaca-attcaacttac |
217 |
Q |
| |
|
||||| |||||||||||| ||||||||| ||| |||||||||||| |||| | |||||||||||||||||||||||||||||||||| ||||| ||||| |
|
|
| T |
35355997 |
tgtgtatgtttgcttaaggtgtgagcatacctcagtgcctgcatgtgtaatagaatcttgtgcagccacattggcaattgtctttacacattcagcttac |
35356096 |
T |
|
| Q |
218 |
acgttggaaa-agaagcaaagaatcaagaatattgacaaaatagaatgtttgagtggatgcatataatggttg-ggaacatataaagtgtttgatgtaga |
315 |
Q |
| |
|
|||||||||| || ||| ||||||||||||||||||||||||||||||||||||||||||| |||||| || |||||||||||||||| |||||||| |
|
|
| T |
35356097 |
acgttggaaatagcagctaagaatcaagaatattgacaaaatagaatgtttgagtggatgc--ttaatggatgtagaacatataaagtgttggatgtaga |
35356194 |
T |
|
| Q |
316 |
aagtgga |
322 |
Q |
| |
|
||||||| |
|
|
| T |
35356195 |
aagtgga |
35356201 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 126; E-Value: 8e-65
Query Start/End: Original strand, 97 - 374
Target Start/End: Original strand, 35364639 - 35364914
Alignment:
| Q |
97 |
cacaagcaaaccacgcaggaagtgtgtgtgtttgcttaagttgtgagcatggctcggtgcctgcatgtctaatggcatcttgtgcagccacattggcaat |
196 |
Q |
| |
|
|||||| ||||||| || ||||||||| |||||||||||| |||||||||||||| ||| ||||||| |||||| |||||||||||||||||||||| | |
|
|
| T |
35364639 |
cacaagtaaaccacacaagaagtgtgtatgtttgcttaaggtgtgagcatggctccttgcttgcatgtgtaatgggatcttgtgcagccacattggcatt |
35364738 |
T |
|
| Q |
197 |
tgtctttacaattcaacttacacgtt-ggaaaagaagcaaagaatcaagaatattgacaaaatagaa-tgtttgagtggatgcatataatggttgggaac |
294 |
Q |
| |
|
||||||||||||||| | |||| ||| |||||||||| ||||||||||||||| || |||||| || | ||| ||||||||||||||||||||||| || |
|
|
| T |
35364739 |
tgtctttacaattcagcgtacatgttgggaaaagaagaaaagaatcaagaataatgggaaaatataatttttttagtggatgcatataatggttggg-ac |
35364837 |
T |
|
| Q |
295 |
atataaagtgtttgatgtagaaagtggaacgacaagttgatcgattcatttagctaggaacttttattggttagtcaatg |
374 |
Q |
| |
|
|||||||||||| ||||||||||||||| |||||||||| || |||||| ||| |||| || | |||||||||||||| |
|
|
| T |
35364838 |
atataaagtgttagatgtagaaagtgga---acaagttgattgactcattttgcttggaatttcttttggttagtcaatg |
35364914 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 57 - 285
Target Start/End: Complemental strand, 35343363 - 35343134
Alignment:
| Q |
57 |
gttatatataactagaagaaaagctgttgagctgttctagcacaagcaaaccacgcaggaagtgtgtgtgtttgcttaagttgtgagcatggctcggtgc |
156 |
Q |
| |
|
||||||||||||||||||| || ||||||| | ||| | ||||| ||||||| || ||||||||| ||||| |||||| ||||||| | ||| |||| |
|
|
| T |
35343363 |
gttatatataactagaagagaacttgttgagttattccaccacaattaaaccacacaagaagtgtgtatgtttacttaaggtgtgagctttgctacgtgc |
35343264 |
T |
|
| Q |
157 |
ctgcatgtctaatggcatcttgtgcagccacattggcaattgtctttacaattcaacttacacgttggaaa-agaagcaaagaatcaagaatattgacaa |
255 |
Q |
| |
|
|||||||| ||||||||| ||| |||||||||||||||||||||||||||||||| |||| | |||||||| || ||||||||||||||||||||||||| |
|
|
| T |
35343263 |
ctgcatgtgtaatggcatattgggcagccacattggcaattgtctttacaattcagcttaaatgttggaaatagcagcaaagaatcaagaatattgacaa |
35343164 |
T |
|
| Q |
256 |
aatagaatgtttgagtggatgcatataatg |
285 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
35343163 |
aatagaatgtttgagtggatgcatataatg |
35343134 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 97 - 347
Target Start/End: Original strand, 35351412 - 35351668
Alignment:
| Q |
97 |
cacaagcaaaccacgcaggaagtgtgtgtgtttgcttaagttgtgagcatggctcggtgcctgcatgtctaatggcatcttgtgcagccacattggcaat |
196 |
Q |
| |
|
||||||||||||| ||||||||||||| | |||||| ||| ||||||||||||| |||| |||||| |||||| |||||||||||||||||||||||| |
|
|
| T |
35351412 |
cacaagcaaaccatgcaggaagtgtgtatctttgctaaaggtgtgagcatggctacgtgctagcatgtgtaatggaatcttgtgcagccacattggcaat |
35351511 |
T |
|
| Q |
197 |
tgtctttacaattcaacttacacgttggaa-aagaagcaaa-----gaatcaagaatattgacaaaatagaatgtttgagtggatgcatataatggttgg |
290 |
Q |
| |
|
||| |||| || ||| | | |||||||||| ||| |||||| |||||||||||||||| ||||| ||||||||||||||||||||||||| ||||| |
|
|
| T |
35351512 |
tgtttttataagtcagcatgcacgttggaagaagcagcaaattaaagaatcaagaatattgaaaaaatcgaatgtttgagtggatgcatataatagttgg |
35351611 |
T |
|
| Q |
291 |
gaacatataaagtgtttgatgtagaaagtggaacgacaagttgatcgattcatttag |
347 |
Q |
| |
|
|||||| ||||||||| || |||||||||||||| ||||||| || |||||| |||| |
|
|
| T |
35351612 |
gaacatttaaagtgttggaagtagaaagtggaacaacaagttaattgattcagttag |
35351668 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #10
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 166 - 333
Target Start/End: Original strand, 35341070 - 35341243
Alignment:
| Q |
166 |
taatggcatcttgtgcagccacattggcaa--ttgtctttacaattcaacttacacgttggaa-aagaagcaaagaatcaagaat----attgacaaaat |
258 |
Q |
| |
|
|||||| ||||||||||||||||||||||| |||||||||||||||| | |||||||||||| ||| |||| ||| |||||||| ||||||||||| |
|
|
| T |
35341070 |
taatgggatcttgtgcagccacattggcaaaattgtctttacaattcagcatacacgttggaagaagcagcatagattcaagaattaatattgacaaaat |
35341169 |
T |
|
| Q |
259 |
agaatgtttgagtggatgcatataatggttg-ggaacatataaagtgtttgatgtagaaagtggaacgacaagttg |
333 |
Q |
| |
|
||||||||||||||||||| ||||||||| |||||||||||||||| |||||||||||||||||||| |||| |
|
|
| T |
35341170 |
agaatgtttgagtggatgc--ttaatggttgtagaacatataaagtgttgaatgtagaaagtggaacgacatgttg |
35341243 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #11
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 97 - 266
Target Start/End: Original strand, 35371816 - 35371983
Alignment:
| Q |
97 |
cacaagcaaaccacgcaggaagtgtgtgtgtttgcttaagttgtgagcatggctcggtgcctgcatgtctaatggcatcttgtgcagccacattggcaat |
196 |
Q |
| |
|
|||||| ||||||| || ||||||||| |||||||||||| |||||||||||||| ||| | ||||| |||||| |||||||||||| |||||||| | |
|
|
| T |
35371816 |
cacaagtaaaccacacaagaagtgtgtatgtttgcttaaggtgtgagcatggctccttgcttccatgtgtaatgggatcttgtgcagcatcattggcatt |
35371915 |
T |
|
| Q |
197 |
tgtctttacaattcaacttacacgttg-gaaaagaagcaaagaatcaagaatattgacaaaatagaatgtt |
266 |
Q |
| |
|
| ||||||||||||| ||||||||||| ||||| | |||||||||||||| |||| |||||||||||| |
|
|
| T |
35371916 |
tctctttacaattcagcttacacgttgataaaagcaacaaagaatcaagaa---tgactaaatagaatgtt |
35371983 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #12
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 303 - 369
Target Start/End: Original strand, 35371980 - 35372046
Alignment:
| Q |
303 |
tgtttgatgtagaaagtggaacgacaagttgatcgattcatttagctaggaacttttattggttagt |
369 |
Q |
| |
|
|||| |||||||||||||||| ||||||||||| ||||||||| |||| ||| |||||||||||||| |
|
|
| T |
35371980 |
tgttggatgtagaaagtggaaggacaagttgattgattcattttgctatgaatttttattggttagt |
35372046 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #13
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 343 - 402
Target Start/End: Original strand, 35356206 - 35356267
Alignment:
| Q |
343 |
tttagctaggaacttttattggttagtcaatgg--ctttaagttttgtcatttcttctgttt |
402 |
Q |
| |
|
|||||||||||| |||||||||||||||||||| ||||| |||||||||||||||||||| |
|
|
| T |
35356206 |
tttagctaggaatttttattggttagtcaatggccctttatattttgtcatttcttctgttt |
35356267 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #14
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 338 - 402
Target Start/End: Complemental strand, 35343124 - 35343059
Alignment:
| Q |
338 |
attcatttagctaggaacttttattggttagtcaatg-gctttaagttttgtcatttcttctgttt |
402 |
Q |
| |
|
||||||||||||||||| ||||||||||||||| ||| ||||| |||||||||||| | |||||| |
|
|
| T |
35343124 |
attcatttagctaggaatttttattggttagtctatgtcctttatgttttgtcatttttgctgttt |
35343059 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 315 - 376
Target Start/End: Original strand, 35356831 - 35356892
Alignment:
| Q |
315 |
aaagtggaacgacaagttgatcgattcatttagctaggaacttttattggttagtcaatggc |
376 |
Q |
| |
|
|||||| |||||||||||||| ||||| ||| |||| || |||||||||||| |||||||| |
|
|
| T |
35356831 |
aaagtgaaacgacaagttgattgattcgttttgctataaatttttattggttattcaatggc |
35356892 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University