View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15025_low_2 (Length: 742)
Name: NF15025_low_2
Description: NF15025
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15025_low_2 |
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Alignment Details
Target: chr6 (Bit Score: 558; Significance: 0; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 558; E-Value: 0
Query Start/End: Original strand, 103 - 717
Target Start/End: Original strand, 11162433 - 11163051
Alignment:
| Q |
103 |
tctactttatttgcacagttggaagcaatatataaatgagcctttctatacattatgcgcagtagaaataaatcaaaagtatagcagatctttcaaaaca |
202 |
Q |
| |
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|||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11162433 |
tctactttatttgcacagttggaagcaacatataaatgagccttcatatacattatgcgcagtagaaataaatcaaaagtatagcagatctttcaaaaca |
11162532 |
T |
|
| Q |
203 |
caaaaccataaccgaaacagtcattaacggaaacaaaaggacaacggacttggacatcagcaacacaaccgaaactccataatctttcaagagacttcac |
302 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11162533 |
caaaaccataaccgaaacagtcattaacggaaacaaaaggacaactgacttggacatcagcaacacaaccgaaactccataatctttcaagagacttcac |
11162632 |
T |
|
| Q |
303 |
tcataggcttcaaccttaacatgcaccagcttaggctcttttgtaacagatgcatcttcaccaatcaaaacaatatcatctagtgattcgacgctatcag |
402 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11162633 |
tcataggcttcaaccttaacatgcaccagcttaggctcttttgtaacagatgcatcttcaccaatcaaaacaatatcatctagtgattcgacgctatcag |
11162732 |
T |
|
| Q |
403 |
cagatcgctttcccaaagatttgatagttggagtcacaactgaatcaattgcggcaacttcgtctttgttgcttgaatcaaccagctgtggctcttttgt |
502 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||| |||||||||||| |
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| T |
11162733 |
cagatcgctttcccaaagatttgatagttggagtcacaactgaatcaattgcggaaacttcgtctttgttgcttgaattaaccagctttggctcttttgt |
11162832 |
T |
|
| Q |
503 |
agcagatgcatcagaactaagcacaacaaaatcatcaagtgattccacgctatcagaagaccactttcccaaaggtttgctagttggagtcacagccgaa |
602 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
11162833 |
agcagatgcatcagaactaagcacaacaaaatcatcaagtgattccacgctatcagaagaccactttcccaaaggtttgctagtttgagtcacagccgaa |
11162932 |
T |
|
| Q |
603 |
tcagcagcagcaacttcgtttttgatgc----atatttttcagtttgctgctgctaactacaacctatataatttaaaaaatcctaaactgcaaaataaa |
698 |
Q |
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||||| || ||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11162933 |
tcagccgctgcaacttcgtttttgatgcatatatatttttcagtttgttgctgctaactacaacctatataatttaaaaaatcctaaactgcaaaataaa |
11163032 |
T |
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| Q |
699 |
cgatcgaaacacacaaaaa |
717 |
Q |
| |
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||||||||||||||||||| |
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| T |
11163033 |
cgatcgaaacacacaaaaa |
11163051 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 428; E-Value: 0
Query Start/End: Original strand, 9 - 456
Target Start/End: Original strand, 11201114 - 11201561
Alignment:
| Q |
9 |
cacagacatgcaatgaacaaaacatatttgaggtttactacatcaggatctaaaatgtctaagcactttgattgtgcagataatccttaagtcttctact |
108 |
Q |
| |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11201114 |
cacagacatgcaatggacaaaacatatttgaggtttactacatcaggatctaaaatgtctaagcactttgattgtgcagataatccttaagtcttctact |
11201213 |
T |
|
| Q |
109 |
ttatttgcacagttggaagcaatatataaatgagcctttctatacattatgcgcagtagaaataaatcaaaagtatagcagatctttcaaaacacaaaac |
208 |
Q |
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|||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11201214 |
ttatttgcacagttggaagcaacatataaatgagccttcatatacattatgcgcagtagaaataaatcaaaagtatagcagatctttcaaaacacaaaac |
11201313 |
T |
|
| Q |
209 |
cataaccgaaacagtcattaacggaaacaaaaggacaacggacttggacatcagcaacacaaccgaaactccataatctttcaagagacttcactcatag |
308 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11201314 |
cataaccgaaacagtcattaacggaaacaaaaggacaactgacttggacatcagcaacacaaccgaaactccataatctttcaagagacttcactcatag |
11201413 |
T |
|
| Q |
309 |
gcttcaaccttaacatgcaccagcttaggctcttttgtaacagatgcatcttcaccaatcaaaacaatatcatctagtgattcgacgctatcagcagatc |
408 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11201414 |
gcttcaaccttaacatgcaccagcttaggctcttttgtaacagatgcatcttcaccaatcaaaacaatatcatctagtgattcgacgctatcagcagatc |
11201513 |
T |
|
| Q |
409 |
gctttcccaaagatttgatagttggagtcacaactgaatcaattgcgg |
456 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11201514 |
gctttcccaaagatttgatagttggagtcacaactgaatcaattgcgg |
11201561 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 9 - 60
Target Start/End: Original strand, 11162385 - 11162436
Alignment:
| Q |
9 |
cacagacatgcaatgaacaaaacatatttgaggtttactacatcaggatcta |
60 |
Q |
| |
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||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
11162385 |
cacagacatgcaatggacaaaacatatttgaggtttactacatcaggatcta |
11162436 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 483 - 605
Target Start/End: Original strand, 11201432 - 11201554
Alignment:
| Q |
483 |
accagctgtggctcttttgtagcagatgcatcagaactaagcacaacaaaatcatcaagtgattccacgctatcagaagaccactttcccaaaggtttgc |
582 |
Q |
| |
|
||||||| |||||||||||| |||||||||| || || || ||||| |||||| |||||||| |||||||||| ||| | ||||||||||| |||| |
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| T |
11201432 |
accagcttaggctcttttgtaacagatgcatcttcaccaatcaaaacaatatcatctagtgattcgacgctatcagcagatcgctttcccaaagatttga |
11201531 |
T |
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| Q |
583 |
tagttggagtcacagccgaatca |
605 |
Q |
| |
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|||||||||||||| | |||||| |
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| T |
11201532 |
tagttggagtcacaactgaatca |
11201554 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 83; Significance: 6e-39; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 83; E-Value: 6e-39
Query Start/End: Original strand, 9 - 99
Target Start/End: Complemental strand, 249085 - 248995
Alignment:
| Q |
9 |
cacagacatgcaatgaacaaaacatatttgaggtttactacatcaggatctaaaatgtctaagcactttgattgtgcagataatccttaag |
99 |
Q |
| |
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||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
249085 |
cacagacatgcaatggacaaaacatatttgaggtttactacctcaggatctaaaatgtctaagcactttgattgtgcagataatccttaag |
248995 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 50; Significance: 3e-19; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 409 - 486
Target Start/End: Original strand, 4802779 - 4802856
Alignment:
| Q |
409 |
gctttcccaaagatttgatagttggagtcacaactgaatcaattgcggcaacttcgtctttgttgcttgaatcaacca |
486 |
Q |
| |
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|||||||||||| ||| ||||||||||||||| ||||||| | || ||||||||||||||||||||||||||||||| |
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| T |
4802779 |
gctttcccaaaggtttactagttggagtcacaattgaatcagtagcagcaacttcgtctttgttgcttgaatcaacca |
4802856 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 397 - 477
Target Start/End: Original strand, 4802699 - 4802779
Alignment:
| Q |
397 |
tatcagcagatcgctttcccaaagatttgatagttggagtcacaactgaatcaattgcggcaacttcgtctttgttgcttg |
477 |
Q |
| |
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|||||| ||| ||||||||||||| |||| ||||||||||||||| ||||||| | || |||||||||||||||||||||| |
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| T |
4802699 |
tatcagtagaccgctttcccaaaggtttgctagttggagtcacaattgaatcagtagcagcaacttcgtctttgttgcttg |
4802779 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 553 - 626
Target Start/End: Original strand, 4802699 - 4802772
Alignment:
| Q |
553 |
tatcagaagaccactttcccaaaggtttgctagttggagtcacagccgaatcagcagcagcaacttcgtttttg |
626 |
Q |
| |
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|||||| ||||| ||||||||||||||||||||||||||||||| ||||||| |||||||||||||| |||| |
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| T |
4802699 |
tatcagtagaccgctttcccaaaggtttgctagttggagtcacaattgaatcagtagcagcaacttcgtctttg |
4802772 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 566 - 626
Target Start/End: Original strand, 4802780 - 4802840
Alignment:
| Q |
566 |
ctttcccaaaggtttgctagttggagtcacagccgaatcagcagcagcaacttcgtttttg |
626 |
Q |
| |
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||||||||||||||| ||||||||||||||| ||||||| |||||||||||||| |||| |
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|
| T |
4802780 |
ctttcccaaaggtttactagttggagtcacaattgaatcagtagcagcaacttcgtctttg |
4802840 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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