View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15025_low_21 (Length: 425)
Name: NF15025_low_21
Description: NF15025
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15025_low_21 |
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Alignment Details
Target: chr4 (Bit Score: 288; Significance: 1e-161; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 90 - 401
Target Start/End: Complemental strand, 4452026 - 4451716
Alignment:
| Q |
90 |
ataaattagttggttcatgttgaaacatgtttacataggacaacattgatcttcaatttttacattagttgacttgtgttatcattgttttgatttagtg |
189 |
Q |
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| T |
4452026 |
ataaattaattggttcatgttgaaatatgtt-acataggacaacattgatcttcaatttttacatgagttgacttgtgttatcattgttttgatttagtg |
4451928 |
T |
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| Q |
190 |
ttgacttttgtagagtttgatgaatttggatttgatttgcttatgattgatatagatcagtgatttgatattggttttcttgtcttgattttgctgttgt |
289 |
Q |
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| T |
4451927 |
ttgacttttgtagagtttgatgaatttggatttgatttgcttatgattgatatagatcagtgatttgatattggttttcttgtctttattttgctgttgt |
4451828 |
T |
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| Q |
290 |
tcttgtttgaagttcatgttttgtaatgtaattgagctagctttgtcgttgtgtgtgtttggttccgcggtgttttgtatagatcaatgatttgaaattg |
389 |
Q |
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| T |
4451827 |
tcttgtttgaagttcatgttttgtaatgtaattgagctagctttgtcgttgtgtgtgtttggttccgcggtgttttgtatagatcaatgatttgaaattg |
4451728 |
T |
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| Q |
390 |
gtttttatgttc |
401 |
Q |
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| T |
4451727 |
gtttttatgttc |
4451716 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 4452115 - 4452062
Alignment:
| Q |
1 |
tttttcgtgagtttctttcattcagtgtagaatctttttcaatattgaagccca |
54 |
Q |
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| T |
4452115 |
tttttcgtgagtttctttcattcaatgtagaatctttttcaatattgaaaccca |
4452062 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 292 - 353
Target Start/End: Complemental strand, 4451701 - 4451641
Alignment:
| Q |
292 |
ttgtttgaagttcatgttttgtaatgtaattgagctagctttgtcgttgtgtgtgtttggtt |
353 |
Q |
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| T |
4451701 |
ttgtttgaattttatgttttgtaatgtaattaagctag-tttgacttcgtgtgtgtttggtt |
4451641 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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