View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15025_low_22 (Length: 422)
Name: NF15025_low_22
Description: NF15025
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15025_low_22 |
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| [»] chr7 (3 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 386; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 386; E-Value: 0
Query Start/End: Original strand, 1 - 422
Target Start/End: Complemental strand, 8314799 - 8314379
Alignment:
| Q |
1 |
gacccctaaatcacataaagtgtccccaagaaacacatcattgatagaaattggaatgttgaaacttctaggatccatgattttgattttagtctctact |
100 |
Q |
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| T |
8314799 |
gacccctaaatcacataaagtgtccccaagaaacacatcattgatagaaattggaatgttgaaacttctagtatccatgattttgattttagtctctact |
8314700 |
T |
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| Q |
101 |
ttagtattggcatggtaatcttggctaaggatatccaccctactgccgtcgactgctctttaagtttcacaaggtcttctaacatttacatgtaacaagg |
200 |
Q |
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| T |
8314699 |
ttagtattggcatggtaattttggctaaggatatccaccctgctgccgtcgactgctctttaagtttcacaaggtcttctaacatttacatgtaacaagg |
8314600 |
T |
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| Q |
201 |
attctgctctagcatttgttttgtcggcatttctacctttaatcttatcagcttttgcaagaattgctcgaagctgccatcttgaccttgatctgcacgt |
300 |
Q |
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| T |
8314599 |
attctgctctagcatttgttttgtc-gcatttctacctttaatcttatcagcttttgcaagaattgctcgaagctgccatcttgaccttgatctgcacgt |
8314501 |
T |
|
| Q |
301 |
gttttagacttcacttttcctaggaaaacgtcagtgccttcctcttcaaaagcttcagtaccttcggttgagaaagcttcagtaccttcgtcttcacttg |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||| |||||||||| |
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| T |
8314500 |
gttttagacttcacttttcctaggaaaacgtcagtgccttcctcttcaaaggcttcagtaccttcggttgaaaaagcttcagtaccttcatcttcacttg |
8314401 |
T |
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| Q |
401 |
ggtcttcctcgacttcatctca |
422 |
Q |
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| T |
8314400 |
ggtcttcctcgacttcgtctca |
8314379 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 344 - 416
Target Start/End: Original strand, 6041324 - 6041396
Alignment:
| Q |
344 |
cttcaaaagcttcagtaccttcggttgagaaagcttcagtaccttcgtcttcacttgggtcttcctcgacttc |
416 |
Q |
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|||| ||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6041324 |
cttcgaaagcttcattaccttcggttttgaaagcttcagtaccttcgtcttcacttgggtcttcctcgacttc |
6041396 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 349 - 416
Target Start/End: Complemental strand, 16063726 - 16063661
Alignment:
| Q |
349 |
aaagcttcagtaccttcggttgagaaagcttcagtaccttcgtcttcacttgggtcttcctcgacttc |
416 |
Q |
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| T |
16063726 |
aaagcttcagtacctgcggttgcgaaagct--agtaacttcgtcttcacttgaatcttccccgacttc |
16063661 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 352 - 419
Target Start/End: Complemental strand, 18384996 - 18384929
Alignment:
| Q |
352 |
gcttcagtaccttcggttgagaaagcttcagtaccttcgtcttcacttgggtcttcctcgacttcatc |
419 |
Q |
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||||||||||||||||||| |||||||||||||||||| |||||| |||| ||||| ||||||||||| |
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| T |
18384996 |
gcttcagtaccttcggttgtgaaagcttcagtaccttcatcttcaattggatcttcttcgacttcatc |
18384929 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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