View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15025_low_24 (Length: 405)
Name: NF15025_low_24
Description: NF15025
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15025_low_24 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 382; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 382; E-Value: 0
Query Start/End: Original strand, 12 - 405
Target Start/End: Original strand, 40517944 - 40518336
Alignment:
| Q |
12 |
taatactaaatatcacatttactaacgtctgatcaaatctcgtgtttaaccaagctagctctgctggaaggaaattcaccaaaaagagtagtaaagtttt |
111 |
Q |
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| T |
40517944 |
taatactaaatatcacatttactaacgtctgatcaaatctcgtgtttaaccaagctagctctgctggaaggaaattcaccaaaaagagtagtaaagtttt |
40518043 |
T |
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| Q |
112 |
ttctgttctctacttttcactaaattatcattaaattggtataccatataatatatcattggaatccctatattattggcctgcgttcactgtggcatac |
211 |
Q |
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| T |
40518044 |
ttttgttctctacttttcactaaattatcattaaattggtataccatataatatatcattggaatccctatattattggcctgcgttcactgtggcatac |
40518143 |
T |
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| Q |
212 |
attgaatgcatcaaagcgacatgtctgagaaataacaccatacatatatacaatgagaatgagttgcaccaacctttataacaaaaattgaatttggttg |
311 |
Q |
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| T |
40518144 |
attgaatgcatcaaagcgacatgtctgagaaataacaccatacatat-tacaatgagaatgagttgcaccaacctttataacaaaaattgaatttggttg |
40518242 |
T |
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| Q |
312 |
tatttactatttgatcagaaaataattacaaattgaactatacacttcacgagcacataatagcaaagatcataggttacttacacgtataact |
405 |
Q |
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| T |
40518243 |
tatttactatttgatcagaaaataattacaaattgaactatacacttcacgagcacataatagcaaagatcataggttacttacacgtataact |
40518336 |
T |
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Target: chr2 (Bit Score: 58; Significance: 3e-24; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 162 - 247
Target Start/End: Original strand, 34464625 - 34464710
Alignment:
| Q |
162 |
atatatcattggaatccctatattattggcctgcgttcactgtggcatacattgaatgcatcaaagcgacatgtctgagaaataac |
247 |
Q |
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| T |
34464625 |
atatatcattggaatccctatattattggcatgtgttcactgtgggatgcattgaaagcatcaaagcgacttgtctgcgaaataac |
34464710 |
T |
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