View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15025_low_26 (Length: 390)

Name: NF15025_low_26
Description: NF15025
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15025_low_26
NF15025_low_26
[»] chr4 (10 HSPs)
chr4 (251-376)||(37002082-37002207)
chr4 (1-139)||(37002520-37002653)
chr4 (184-259)||(37002400-37002475)
chr4 (69-129)||(36982838-36982898)
chr4 (69-129)||(36998303-36998363)
chr4 (299-376)||(36998179-36998254)
chr4 (302-376)||(36982711-36982783)
chr4 (345-376)||(36989199-36989230)
chr4 (249-278)||(36989244-36989273)
chr4 (65-129)||(36989320-36989384)


Alignment Details
Target: chr4 (Bit Score: 126; Significance: 7e-65; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 126; E-Value: 7e-65
Query Start/End: Original strand, 251 - 376
Target Start/End: Complemental strand, 37002207 - 37002082
Alignment:
Q  251 agtagtataatggtttgttcttcttgatccttttcatctccgtttcattgcatgctaatcaacactacccttcttttatttccttcatttctttctaggc 350  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37002207 agtagtataatggtttgttcttcttgatccttttcatctccgtttcattgcatgctaatcaacactacccttcttttatttccttcatttctttctaggc 37002108  T
Q  351 ctcttcttgctctggtgtatcctatg 376  Q
    ||||||||||||||||||||||||||    
T  37002107 ctcttcttgctctggtgtatcctatg 37002082  T

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Target: chr4; HSP #2
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 1 - 139
Target Start/End: Complemental strand, 37002653 - 37002520
Alignment:
Q  1 tacttattctaatacagcagccattgaatgtttgaaataa-tttgattcctcttctctttctctatcacatggcttcttcatggtttcttaaactggctt 99  Q
    |||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||      ||||||||||||||||||||||||||||||||||||    
T  37002653 tacttattctaatacaacagccattgaatgtttgaaataaatttgattcctcttctct------atcacatggcttcttcatggtttcttaaactggctt 37002560  T
Q  100 tcaaatgccttcatcattttgcatggtatgtatatccctc 139  Q
    ||||||| ||||||||||||||||||||||||||||||||    
T  37002559 tcaaatggcttcatcattttgcatggtatgtatatccctc 37002520  T

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Target: chr4; HSP #3
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 184 - 259
Target Start/End: Complemental strand, 37002475 - 37002400
Alignment:
Q  184 gaaaaaataaatacacttatgttttctcatatatcttcacattatcagtttcatgtataaactacaaagtagtata 259  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37002475 gaaaaaataaatacacttatgttttctcatatatcttcacattatcagtttcatgtataaactacaaagtagtata 37002400  T

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Target: chr4; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 69 - 129
Target Start/End: Complemental strand, 36982898 - 36982838
Alignment:
Q  69 atggcttcttcatggtttcttaaactggctttcaaatgccttcatcattttgcatggtatg 129  Q
    |||||||||||||||||||| |||||  |||||||||||||| ||||||||||||||||||    
T  36982898 atggcttcttcatggtttctcaaactaactttcaaatgcctttatcattttgcatggtatg 36982838  T

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Target: chr4; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 69 - 129
Target Start/End: Complemental strand, 36998363 - 36998303
Alignment:
Q  69 atggcttcttcatggtttcttaaactggctttcaaatgccttcatcattttgcatggtatg 129  Q
    ||||||||||||||| |||| ||||| |||||||||||| |||||||||||||||||||||    
T  36998363 atggcttcttcatggcttctcaaacttgctttcaaatgcattcatcattttgcatggtatg 36998303  T

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Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 299 - 376
Target Start/End: Complemental strand, 36998254 - 36998179
Alignment:
Q  299 tgcatgctaatcaacactacccttcttttatttccttcatttctttctaggcctcttcttgctctggtgtatcctatg 376  Q
    |||||||||||||||  |||||||||||||||||||||  |  ||| |||||| ||| ||||||||||||||||||||    
T  36998254 tgcatgctaatcaacgttacccttcttttatttccttc--tattttataggccacttgttgctctggtgtatcctatg 36998179  T

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Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 302 - 376
Target Start/End: Complemental strand, 36982783 - 36982711
Alignment:
Q  302 atgctaatcaacactacccttcttttatttccttcatttctttctaggcctcttcttgctctggtgtatcctatg 376  Q
    ||||| ||||| | |||||||||||||||||| ||  ||  ||||||||||||| ||||||||||||||||||||    
T  36982783 atgctgatcaatagtacccttcttttatttccctctctt--ttctaggcctcttgttgctctggtgtatcctatg 36982711  T

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Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 345 - 376
Target Start/End: Complemental strand, 36989230 - 36989199
Alignment:
Q  345 ctaggcctcttcttgctctggtgtatcctatg 376  Q
    ||||||||||||||||||||||||||||||||    
T  36989230 ctaggcctcttcttgctctggtgtatcctatg 36989199  T

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Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 249 - 278
Target Start/End: Complemental strand, 36989273 - 36989244
Alignment:
Q  249 aaagtagtataatggtttgttcttcttgat 278  Q
    ||||||||||||||||||||||||||||||    
T  36989273 aaagtagtataatggtttgttcttcttgat 36989244  T

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Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 65 - 129
Target Start/End: Complemental strand, 36989384 - 36989320
Alignment:
Q  65 tcacatggcttcttcatggtttcttaaactggctttcaaatgccttcatcattttgcatggtatg 129  Q
    |||||||||||||||||  || || ||||| | |||||||| ||||||||| || ||||||||||    
T  36989384 tcacatggcttcttcattcttgctcaaactcgttttcaaatcccttcatcacttcgcatggtatg 36989320  T

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