View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15025_low_33 (Length: 356)
Name: NF15025_low_33
Description: NF15025
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15025_low_33 |
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Alignment Details
Target: chr5 (Bit Score: 119; Significance: 1e-60; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 1 - 158
Target Start/End: Original strand, 20513924 - 20514081
Alignment:
| Q |
1 |
tcatcgttaatggtgaaaatcgaatttaatttcgtactgaatagagannnnnnnnnatggtaaatgtttatatgttaattgttatattatattaacgaga |
100 |
Q |
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| T |
20513924 |
tcattgttaatggtgaaaatcgaatttaatttcgtactgaatagagatttttttttatggtaaatgtttgtatgttaattgttatattatattaacgaga |
20514023 |
T |
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| Q |
101 |
cgaatgtaattaacgataaattattttctagttataaaaataatacttgtgatatact |
158 |
Q |
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| T |
20514024 |
cgaaggtaattaacgataaattattttctagttataaaaataatacttgtgatatact |
20514081 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 161 - 342
Target Start/End: Original strand, 20514148 - 20514324
Alignment:
| Q |
161 |
aactaatggattaaactgtaactgataagtaacacaagtatacagaaaataggaagcagatcgaccatcacatcttagatctgnnnnnnnnnnnnnnnnn |
260 |
Q |
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|||||||||||||||||| |||||||||| |||||||||||||| || | | ||||||||||||||||||||||||| |
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| T |
20514148 |
aactaatggattaaactggaactgataagcaacacaagtatacataactaatg-----gatcgaccatcacatcttagatctgaaaaaccaaacaaaaaa |
20514242 |
T |
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| Q |
261 |
tgcataatttataaacaaactactgaatctgagttaaactgcaaaagattcatcacatctacaagaatgatttgttgttcct |
342 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20514243 |
tgcataatttataaacaaactactgaatctgagttaaactgcaaaagattcatcacatctacaagaatgatttgttgttcct |
20514324 |
T |
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