View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15025_low_34 (Length: 352)
Name: NF15025_low_34
Description: NF15025
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15025_low_34 |
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Alignment Details
Target: chr4 (Bit Score: 331; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 1 - 335
Target Start/End: Original strand, 40856039 - 40856373
Alignment:
| Q |
1 |
taggcactcaatagtaaatttatgttgttatatatttggctctgtgttggaacttattgtggattttctacatatgttaattgacagagttacacaggtg |
100 |
Q |
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| T |
40856039 |
taggcactcaatagtaaattcatgttgttatatatttggctctgtgttggaacttattgtggattttctacatatgttaattgacagagttacacaggtg |
40856138 |
T |
|
| Q |
101 |
catgataatttctgctagctaatgttcccattctgtcatattgtaggtccttgaaggaagatcatatcgacttcgtaatccttgggtgggaattgtaaac |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40856139 |
catgataatttctgctagctaatgttcccattctgtcatattgtaggtccttgaaggaagatcatatcgacttcgtaatccttgggtgggaattgtaaac |
40856238 |
T |
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| Q |
201 |
cgttctcaggaagatattaataagaacgtagatatgattgcagctcggcagagagagcgtgaattttttgccaccaatcctgattacgcacacttggcca |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40856239 |
cgttctcaggaagatattaataagaacgtagatatgattgcagctcggcagagagagcgtgaattttttgccaccaatcctgattacgcacacttggcca |
40856338 |
T |
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| Q |
301 |
gcaaaatgggctcagaatatcttgcaaggctactg |
335 |
Q |
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||||||||||||||||||||||||||||||||||| |
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| T |
40856339 |
gcaaaatgggctcagaatatcttgcaaggctactg |
40856373 |
T |
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