View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15025_low_37 (Length: 342)

Name: NF15025_low_37
Description: NF15025
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15025_low_37
NF15025_low_37
[»] chr3 (6 HSPs)
chr3 (1-323)||(52805469-52805791)
chr3 (151-206)||(53288122-53288178)
chr3 (109-216)||(53287836-53287943)
chr3 (255-323)||(53288010-53288078)
chr3 (101-139)||(54142206-54142244)
chr3 (101-138)||(53288194-53288231)
[»] chr1 (8 HSPs)
chr1 (101-210)||(23617683-23617792)
chr1 (101-210)||(23649024-23649133)
chr1 (101-210)||(23734654-23734763)
chr1 (101-210)||(23741846-23741955)
chr1 (106-216)||(23617965-23618073)
chr1 (106-216)||(23649307-23649415)
chr1 (153-216)||(23627349-23627412)
chr1 (150-178)||(23734976-23735004)
[»] chr6 (7 HSPs)
chr6 (151-206)||(11841635-11841691)
chr6 (255-323)||(11841735-11841803)
chr6 (109-216)||(11841870-11841977)
chr6 (101-138)||(11841582-11841619)
chr6 (144-180)||(34119025-34119061)
chr6 (144-180)||(34146184-34146220)
chr6 (144-180)||(34158800-34158836)
[»] chr4 (3 HSPs)
chr4 (108-175)||(38648631-38648698)
chr4 (154-216)||(48430619-48430679)
chr4 (122-171)||(48430865-48430914)


Alignment Details
Target: chr3 (Bit Score: 299; Significance: 1e-168; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 1 - 323
Target Start/End: Original strand, 52805469 - 52805791
Alignment:
Q  1 atcaactgactattctggcatccttgatatcactctgcctccaaacaacgtcgatcccgatattctttttccctagtaataaatactgctacctcagtat 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||| | ||    
T  52805469 atcaactgactattctggcatccttgatatcactctgcctccaaacaacgtcgatcccgatattctttttccctagtaataaatgctactacctcggcat 52805568  T
Q  101 cctgctgatattaaagatttcaaatatgcatcgagaaacttatattgtaaaacttgaatcaaaagcattgctaaaggctacatagactttgttaagattt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52805569 cctgctgatattaaagatttcaaatatgcatcgagaaacttatattgtaaaacttgaatcaaaagcattgctaaaggctacatagactttgttaagattt 52805668  T
Q  201 gcagaagaaacttgccgtgtcttcttgatcaaattcttcatgagtacaaaaccaggtgcaaagactatgatgcagaaatagaactagaaggaattcttgt 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||    
T  52805669 gcagaagaaacttgccgtgtcttcttgatcaaattcttcatgagtacaaaaccaggtgcaaagactatgatacagaaagagaactagaaggaattcttgt 52805768  T
Q  301 gcaaatcgaacggaaggagtctc 323  Q
    |||||||||||||||||||||||    
T  52805769 gcaaatcgaacggaaggagtctc 52805791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 151 - 206
Target Start/End: Complemental strand, 53288178 - 53288122
Alignment:
Q  151 aacttgaatcaaaagcatt-gctaaaggctacatagactttgttaagatttgcagaa 206  Q
    ||||||||||||||||||| ||||||||||||||| ||||||||||||||| |||||    
T  53288178 aacttgaatcaaaagcatttgctaaaggctacataaactttgttaagattttcagaa 53288122  T

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Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 109 - 216
Target Start/End: Complemental strand, 53287943 - 53287836
Alignment:
Q  109 tattaaagatttcaaatatgcatcgagaaacttatattgtaaaacttgaatcaaaagcattgctaaaggctacatagactttgttaagatttgcagaaga 208  Q
    |||||||||||| |||||||||   ||||||    ||||| ||||| ||||||||||||||||||| |||  |||| |||||| ||| |||||||||| |    
T  53287943 tattaaagatttgaaatatgcacaaagaaacgagaattgtgaaactagaatcaaaagcattgctaacggccccataaactttggtaacatttgcagaaaa 53287844  T
Q  209 aacttgcc 216  Q
    ||||||||    
T  53287843 aacttgcc 53287836  T

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Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 255 - 323
Target Start/End: Complemental strand, 53288078 - 53288010
Alignment:
Q  255 ggtgcaaagactatgatgcagaaatagaactagaaggaattcttgtgcaaatcgaacggaaggagtctc 323  Q
    ||||||||| | ||||| || ||| ||||||||||  ||||||||||| |||||| |||||||||||||    
T  53288078 ggtgcaaaggcaatgatacaaaaagagaactagaacaaattcttgtgcgaatcgagcggaaggagtctc 53288010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 101 - 139
Target Start/End: Complemental strand, 54142244 - 54142206
Alignment:
Q  101 cctgctgatattaaagatttcaaatatgcatcgagaaac 139  Q
    |||| |||||||||||| |||||||||||||||||||||    
T  54142244 cctgttgatattaaagaattcaaatatgcatcgagaaac 54142206  T

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Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 101 - 138
Target Start/End: Complemental strand, 53288231 - 53288194
Alignment:
Q  101 cctgctgatattaaagatttcaaatatgcatcgagaaa 138  Q
    ||||||||||||||||| |||||||||| |||||||||    
T  53288231 cctgctgatattaaagaattcaaatatgaatcgagaaa 53288194  T

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Target: chr1 (Bit Score: 51; Significance: 3e-20; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 101 - 210
Target Start/End: Original strand, 23617683 - 23617792
Alignment:
Q  101 cctgctgatattaaagatttcaaatatgcatcgagaaacttatattgtaaaacttgaatcaaaagcattgctaaaggctacatagactttg-ttaagatt 199  Q
    ||||||||||||||||| |||||||||||||  ||||||| | ||||  |||||||||||||||||| || ||||||| ||||| |||||| ||||||||    
T  23617683 cctgctgatattaaagaattcaaatatgcatatagaaactaaaattgagaaacttgaatcaaaagcaatg-taaaggcaacataaactttgtttaagatt 23617781  T
Q  200 tgcagaagaaa 210  Q
    | |||||||||    
T  23617782 ttcagaagaaa 23617792  T

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Target: chr1; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 101 - 210
Target Start/End: Original strand, 23649024 - 23649133
Alignment:
Q  101 cctgctgatattaaagatttcaaatatgcatcgagaaacttatattgtaaaacttgaatcaaaagcattgctaaaggctacatagactttg-ttaagatt 199  Q
    ||||||||||||||||| |||||||||||||  ||||||| | ||||  |||||||||||||||||| || ||||||| ||||| |||||| ||||||||    
T  23649024 cctgctgatattaaagaattcaaatatgcatatagaaactaaaattgagaaacttgaatcaaaagcaatg-taaaggcaacataaactttgtttaagatt 23649122  T
Q  200 tgcagaagaaa 210  Q
    | |||||||||    
T  23649123 ttcagaagaaa 23649133  T

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Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 101 - 210
Target Start/End: Original strand, 23734654 - 23734763
Alignment:
Q  101 cctgctgatattaaagatttcaaatatgcatcgagaaacttatattgtaaaacttgaatcaaaagcattgctaaaggctacatagactttg-ttaagatt 199  Q
    ||||||||||||||||| |||||||||||||  ||||||| | ||||  |||||| ||||||||||| || ||||||| ||||| |||||| ||||||||    
T  23734654 cctgctgatattaaagaattcaaatatgcatttagaaactaaaattgagaaacttaaatcaaaagcaatg-taaaggcaacataaactttgtttaagatt 23734752  T
Q  200 tgcagaagaaa 210  Q
    | | |||||||    
T  23734753 tcctgaagaaa 23734763  T

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Target: chr1; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 101 - 210
Target Start/End: Original strand, 23741846 - 23741955
Alignment:
Q  101 cctgctgatattaaagatttcaaatatgcatcgagaaacttatattgtaaaacttgaatcaaaagcattgctaaaggctacatagactttg-ttaagatt 199  Q
    ||||||||||||||||| |||||||||||||  ||||||| | ||||  |||||| ||||||||||| || ||||||| ||||| |||||| ||||||||    
T  23741846 cctgctgatattaaagaattcaaatatgcatttagaaactaaaattgagaaacttaaatcaaaagcaatg-taaaggcaacataaactttgtttaagatt 23741944  T
Q  200 tgcagaagaaa 210  Q
    | | |||||||    
T  23741945 tcctgaagaaa 23741955  T

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Target: chr1; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 106 - 216
Target Start/End: Original strand, 23617965 - 23618073
Alignment:
Q  106 tgatattaaagatttcaaatatgcatcgagaaacttatattgtaaaacttgaatcaaaagcattgctaaaggctacatagactttgttaagatttgcaga 205  Q
    ||||||| ||||||| |||||||||   |||||||   ||||  |||||||||||||||||||||||||||||  |||| |||||| ||| ||||||| |    
T  23617965 tgatattgaagatttaaaatatgcac--agaaactataattgcgaaacttgaatcaaaagcattgctaaaggcctcataaactttggtaacatttgcaaa 23618062  T
Q  206 agaaacttgcc 216  Q
    | |||||||||    
T  23618063 aaaaacttgcc 23618073  T

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Target: chr1; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 106 - 216
Target Start/End: Original strand, 23649307 - 23649415
Alignment:
Q  106 tgatattaaagatttcaaatatgcatcgagaaacttatattgtaaaacttgaatcaaaagcattgctaaaggctacatagactttgttaagatttgcaga 205  Q
    ||||||| ||||||| |||||||||   |||||||   ||||  |||||||||||||||||||||||||||||  |||| |||||| ||| ||||||| |    
T  23649307 tgatattgaagatttaaaatatgcac--agaaactataattgagaaacttgaatcaaaagcattgctaaaggcctcataaactttggtaacatttgcaaa 23649404  T
Q  206 agaaacttgcc 216  Q
    | |||||||||    
T  23649405 aaaaacttgcc 23649415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 153 - 216
Target Start/End: Complemental strand, 23627412 - 23627349
Alignment:
Q  153 cttgaatcaaaagcattgctaaaggctacatagactttgttaagatttgcagaagaaacttgcc 216  Q
    |||||||||||||||||||||||||   |||| |||||| ||| |||||||||| |||||||||    
T  23627412 cttgaatcaaaagcattgctaaaggtcccataaactttggtaacatttgcagaaaaaacttgcc 23627349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 150 - 178
Target Start/End: Original strand, 23734976 - 23735004
Alignment:
Q  150 aaacttgaatcaaaagcattgctaaaggc 178  Q
    |||||||||||||||||||||||||||||    
T  23734976 aaacttgaatcaaaagcattgctaaaggc 23735004  T

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Target: chr6 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 151 - 206
Target Start/End: Original strand, 11841635 - 11841691
Alignment:
Q  151 aacttgaatcaaaagcatt-gctaaaggctacatagactttgttaagatttgcagaa 206  Q
    ||||||||||||||||||| ||||||||||||||| ||||||||||||||| |||||    
T  11841635 aacttgaatcaaaagcatttgctaaaggctacataaactttgttaagatttacagaa 11841691  T

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Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 255 - 323
Target Start/End: Original strand, 11841735 - 11841803
Alignment:
Q  255 ggtgcaaagactatgatgcagaaatagaactagaaggaattcttgtgcaaatcgaacggaaggagtctc 323  Q
    ||||||||| | ||||| || ||| ||||||||||  ||||||||||| ||||||||||||||||||||    
T  11841735 ggtgcaaaggcaatgatacaaaaagagaactagaacaaattcttgtgcgaatcgaacggaaggagtctc 11841803  T

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Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 109 - 216
Target Start/End: Original strand, 11841870 - 11841977
Alignment:
Q  109 tattaaagatttcaaatatgcatcgagaaacttatattgtaaaacttgaatcaaaagcattgctaaaggctacatagactttgttaagatttgcagaaga 208  Q
    |||||||||||| |||||||||   ||||||    ||||| ||||| ||||||||||||||||||| |||  |||| || ||| ||| |||||||||| |    
T  11841870 tattaaagatttgaaatatgcacaaagaaacgagaattgtgaaactagaatcaaaagcattgctaacggccccataaacattggtaacatttgcagaaaa 11841969  T
Q  209 aacttgcc 216  Q
    ||||||||    
T  11841970 aacttgcc 11841977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 101 - 138
Target Start/End: Original strand, 11841582 - 11841619
Alignment:
Q  101 cctgctgatattaaagatttcaaatatgcatcgagaaa 138  Q
    ||||||||||||||||| |||||||||| |||||||||    
T  11841582 cctgctgatattaaagaattcaaatatgaatcgagaaa 11841619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 144 - 180
Target Start/End: Complemental strand, 34119061 - 34119025
Alignment:
Q  144 attgtaaaacttgaatcaaaagcattgctaaaggcta 180  Q
    ||||| ||||||||||||||| |||||||||||||||    
T  34119061 attgtgaaacttgaatcaaaatcattgctaaaggcta 34119025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 144 - 180
Target Start/End: Complemental strand, 34146220 - 34146184
Alignment:
Q  144 attgtaaaacttgaatcaaaagcattgctaaaggcta 180  Q
    ||||| ||||||||||||||| |||||||||||||||    
T  34146220 attgtgaaacttgaatcaaaatcattgctaaaggcta 34146184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 144 - 180
Target Start/End: Complemental strand, 34158836 - 34158800
Alignment:
Q  144 attgtaaaacttgaatcaaaagcattgctaaaggcta 180  Q
    ||||| ||||||||||||||| |||||||||||||||    
T  34158836 attgtgaaacttgaatcaaaatcattgctaaaggcta 34158800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 36; Significance: 0.00000000003; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 108 - 175
Target Start/End: Original strand, 38648631 - 38648698
Alignment:
Q  108 atattaaagatttcaaatatgcatcgagaaacttatattgtaaaacttgaatcaaaagcattgctaaa 175  Q
    |||||||||| |||||||||| |   ||||||| | ||||| ||||||||||||||||||||||||||    
T  38648631 atattaaagaattcaaatatgaacaaagaaactaaaattgtgaaacttgaatcaaaagcattgctaaa 38648698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 154 - 216
Target Start/End: Original strand, 48430619 - 48430679
Alignment:
Q  154 ttgaatcaaaagcattgctaaaggctacatagactttgttaagatttgcagaagaaacttgcc 216  Q
    ||||||||||||||||| |||| ||| |||| ||||||||||||||| ||||| |||||||||    
T  48430619 ttgaatcaaaagcattgataaa-gctccataaactttgttaagatttccagaa-aaacttgcc 48430679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 122 - 171
Target Start/End: Original strand, 48430865 - 48430914
Alignment:
Q  122 aaatatgcatcgagaaacttatattgtaaaacttgaatcaaaagcattgc 171  Q
    ||||||||||  ||||||| | ||||| ||||||||||||||||||||||    
T  48430865 aaatatgcataaagaaactaaaattgtgaaacttgaatcaaaagcattgc 48430914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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