View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15025_low_38 (Length: 324)
Name: NF15025_low_38
Description: NF15025
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15025_low_38 |
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| [»] scaffold0003 (1 HSPs) |
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Alignment Details
Target: scaffold0003 (Bit Score: 282; Significance: 1e-158; HSPs: 1)
Name: scaffold0003
Description:
Target: scaffold0003; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 9 - 302
Target Start/End: Original strand, 230668 - 230961
Alignment:
| Q |
9 |
gaagaatatagtagaataaaagaggaagttaggataaaaacttcaaatcttagagagagaaaagaacttcttgatgggcagcaacgtgctgatagtgaag |
108 |
Q |
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| T |
230668 |
gaagaatatagtagaataaaagaggaagttaggataaaaactgcaaatcttagagagaaaaaagaacttcttgatgggcagcaacgtggtgatagtgaag |
230767 |
T |
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| Q |
109 |
ctcaaactaatttggaagaaactcttcaacaattaaaaaaccgggagtcggagctggattcaaaggaaaaacagatgcgagaaaggcttgataattttgc |
208 |
Q |
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| T |
230768 |
ctcaaactaatttggaagaaactcttcaacaattaaaaaaccgggagtcggagctggattcaaaggaaaaacagatgcgagaaaggcttgataattttgc |
230867 |
T |
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| Q |
209 |
aaagaataaggatgacctggaaaacacgaagagagagctgtgtctgttgcaggaaaagcaaagtgatttcaagcgagaatatcataacttgaag |
302 |
Q |
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| T |
230868 |
aaagaataaggatgacctggaaaacacgaagagagagctgtgtctgttgcaggaaaagcaaagtgatttcaagcgagaatatcataacttgaag |
230961 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 106; Significance: 5e-53; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 26 - 199
Target Start/End: Original strand, 30584698 - 30584871
Alignment:
| Q |
26 |
aaaagaggaagttaggataaaaacttcaaatcttagagagagaaaagaacttcttgatgggcagcaacgtgctgatagtgaagctcaaactaatttggaa |
125 |
Q |
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| T |
30584698 |
aaaagaggaagctgggatgaaaaccgcaaagcttagagaggaaaaagaacttctagataggcagcaacatgctgatagtgaagctcaaaataatttggaa |
30584797 |
T |
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| Q |
126 |
gaaactcttcaacaattaaaaaaccgggagtcggagctggattcaaaggaaaaacagatgcgagaaaggcttga |
199 |
Q |
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| T |
30584798 |
gaaaatcttcaacaattaaaaaaccgggaggctgagctggattcacaggaaaagcagatgcgagaaaggcttga |
30584871 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 52 - 199
Target Start/End: Original strand, 25833895 - 25834042
Alignment:
| Q |
52 |
caaatcttagagagagaaaagaacttcttgatgggcagcaacgtgctgatagtgaagctcaaactaatttggaagaaactcttcaacaattaaaaaaccg |
151 |
Q |
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|||| ||||||||| |||||||||||| ||| ||||||||| |||||||||||||| | ||| ||||||||||||| |||||||||||||||||||| |
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| T |
25833895 |
caaagcttagagaggaaaaagaacttctagataggcagcaacatgctgatagtgaagttgaaaacaatttggaagaaaatcttcaacaattaaaaaacca |
25833994 |
T |
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| Q |
152 |
ggagtcggagctggattcaaaggaaaaacagatgcgagaaaggcttga |
199 |
Q |
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| T |
25833995 |
ggagactgagctggattcacaggaaaagcagatgcgagaaaggcttga |
25834042 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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