View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15025_low_39 (Length: 321)
Name: NF15025_low_39
Description: NF15025
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15025_low_39 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 221; Significance: 1e-121; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 1 - 301
Target Start/End: Complemental strand, 522844 - 522544
Alignment:
| Q |
1 |
cttttgacaaaggggtggtggataacgagggaagagggaggggaagaggaagataaaagatttaagggatattttcataatttggtgttagtttgaaagt |
100 |
Q |
| |
|
||||||| ||||||||||||||| ||||||||| ||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
522844 |
cttttgagaaaggggtggtggatgacgagggaaaagggaggagaagaggaagataaaagatttaaggggtattttcataatttggtgttagtttgaaagt |
522745 |
T |
|
| Q |
101 |
ctcgatggtattttggtctgttcacactatcttttgctcagtcaacgaaccacttaaccaatcaacaatgctacatcacctaattagtgatatgtctgtc |
200 |
Q |
| |
|
||| | |||||||||||||||||||||||||||||| ||||| ||||||||||||||||||| |||||| |||||||||||||||||| ||||||||| |
|
|
| T |
522744 |
ctctgggatattttggtctgttcacactatcttttgctgagtcagcgaaccacttaaccaatcagcaatgccacatcacctaattagtgacatgtctgtc |
522645 |
T |
|
| Q |
201 |
attaaatagctttatggaacaaatgtcaaatgattaatatttgtatgttagatttaaaacgattaacaaattcatgaaccaaaactcaagtaatccctat |
300 |
Q |
| |
|
|||||||||||| || ||||||||||||| ||||||||||||| |||||||||||||||||||||||||||| | ||||||||||||||||||||||||| |
|
|
| T |
522644 |
attaaatagcttcatagaacaaatgtcaagtgattaatatttgcatgttagatttaaaacgattaacaaatttaggaaccaaaactcaagtaatccctat |
522545 |
T |
|
| Q |
301 |
t |
301 |
Q |
| |
|
| |
|
|
| T |
522544 |
t |
522544 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 261 - 301
Target Start/End: Original strand, 43491170 - 43491210
Alignment:
| Q |
261 |
gattaacaaattcatgaaccaaaactcaagtaatccctatt |
301 |
Q |
| |
|
||||||||||||||||||||||||||||||| | ||||||| |
|
|
| T |
43491170 |
gattaacaaattcatgaaccaaaactcaagtgacccctatt |
43491210 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 33 - 160
Target Start/End: Complemental strand, 37686896 - 37686769
Alignment:
| Q |
33 |
agagggaggggaagaggaagataaaagatttaagggatattttcataatttggtgttagtttgaaagtctcgatggtattttggtctgttcacactatct |
132 |
Q |
| |
|
||||||||| || |||||||| |||||||||| || |||||| ||||| ||| ||||||||| ||| | ||| ||||||| ||||| ||| |||| |
|
|
| T |
37686896 |
agagggaggataataggaagatgaaagatttaaagggtatttttgcaatttcacgtttgtttgaaagcctcaagggtgttttggtatgttcccaccatct |
37686797 |
T |
|
| Q |
133 |
tttgctcagtcaacgaaccacttaacca |
160 |
Q |
| |
|
||| | ||||||||| ||||||||||| |
|
|
| T |
37686796 |
tttattgagtcaacgagccacttaacca |
37686769 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University