View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15025_low_4 (Length: 608)

Name: NF15025_low_4
Description: NF15025
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15025_low_4
NF15025_low_4
[»] chr6 (15 HSPs)
chr6 (123-425)||(34872855-34873156)
chr6 (419-592)||(34872644-34872817)
chr6 (1-120)||(1376432-1376551)
chr6 (1-120)||(1384180-1384299)
chr6 (1-118)||(13423036-13423151)
chr6 (15-120)||(31869147-31869252)
chr6 (23-115)||(27612962-27613054)
chr6 (23-120)||(28630186-28630283)
chr6 (36-115)||(33651121-33651200)
chr6 (4-120)||(6531067-6531184)
chr6 (55-120)||(9082950-9083015)
chr6 (59-119)||(16337142-16337202)
chr6 (23-118)||(31760176-31760271)
chr6 (138-182)||(9919200-9919244)
chr6 (15-65)||(12588317-12588367)
[»] chr1 (30 HSPs)
chr1 (1-121)||(12999708-12999826)
chr1 (1-118)||(49931621-49931736)
chr1 (1-120)||(30973620-30973737)
chr1 (15-121)||(33076199-33076305)
chr1 (1-113)||(49446687-49446801)
chr1 (17-120)||(30536071-30536172)
chr1 (36-111)||(49020301-49020376)
chr1 (1-113)||(34817938-34818048)
chr1 (1-113)||(29359811-29359921)
chr1 (23-120)||(26501173-26501270)
chr1 (23-121)||(11947883-11947981)
chr1 (5-113)||(30745058-30745164)
chr1 (5-113)||(30766509-30766615)
chr1 (21-113)||(32831061-32831153)
chr1 (1-80)||(740880-740959)
chr1 (43-113)||(29877405-29877475)
chr1 (1-122)||(30519509-30519628)
chr1 (1-80)||(49570064-49570141)
chr1 (52-114)||(4629641-4629703)
chr1 (15-77)||(50242390-50242452)
chr1 (4-121)||(50775042-50775157)
chr1 (23-111)||(1689477-1689565)
chr1 (23-79)||(36750412-36750468)
chr1 (1-79)||(23665653-23665729)
chr1 (53-123)||(11597754-11597824)
chr1 (23-65)||(44517903-44517945)
chr1 (15-120)||(18434874-18434979)
chr1 (1-113)||(52437562-52437672)
chr1 (1-80)||(5771171-5771248)
chr1 (15-63)||(17082686-17082734)
[»] chr4 (30 HSPs)
chr4 (1-120)||(1795868-1795985)
chr4 (1-120)||(49585062-49585179)
chr4 (1-119)||(50980658-50980774)
chr4 (1-119)||(11546788-11546904)
chr4 (2-111)||(48649587-48649694)
chr4 (15-119)||(55609052-55609156)
chr4 (15-118)||(193612-193715)
chr4 (1-119)||(44257618-44257733)
chr4 (1-120)||(36123347-36123463)
chr4 (1-113)||(16019544-16019654)
chr4 (36-119)||(19165319-19165403)
chr4 (17-113)||(47015087-47015183)
chr4 (1-115)||(32223999-32224110)
chr4 (1-113)||(15522422-15522532)
chr4 (15-104)||(46665097-46665186)
chr4 (39-119)||(34363655-34363735)
chr4 (4-78)||(39478505-39478579)
chr4 (1-113)||(34757802-34757912)
chr4 (1-113)||(34759076-34759186)
chr4 (1-78)||(10474041-10474116)
chr4 (15-121)||(50831641-50831747)
chr4 (1-113)||(31468882-31468992)
chr4 (4-120)||(624198-624313)
chr4 (4-120)||(9118751-9118865)
chr4 (4-65)||(12138923-12138983)
chr4 (1-120)||(20118849-20118968)
chr4 (1-76)||(19232065-19232137)
chr4 (15-91)||(31574855-31574931)
chr4 (23-119)||(42491161-42491257)
chr4 (4-114)||(42815474-42815583)
[»] chr3 (36 HSPs)
chr3 (1-120)||(49761073-49761190)
chr3 (15-120)||(37894128-37894233)
chr3 (3-118)||(48944599-48944712)
chr3 (1-120)||(52100328-52100445)
chr3 (15-119)||(16479712-16479816)
chr3 (1-120)||(52485540-52485657)
chr3 (23-116)||(23868869-23868962)
chr3 (1-121)||(33796334-33796452)
chr3 (1-121)||(54099242-54099360)
chr3 (1-120)||(45186438-45186555)
chr3 (1-86)||(45657690-45657773)
chr3 (15-113)||(36755944-36756042)
chr3 (15-113)||(51698938-51699036)
chr3 (36-113)||(1436917-1436994)
chr3 (15-121)||(26772448-26772555)
chr3 (15-121)||(34592144-34592250)
chr3 (1-79)||(52714801-52714877)
chr3 (15-104)||(26550317-26550406)
chr3 (15-111)||(36907120-36907216)
chr3 (23-120)||(35376968-35377065)
chr3 (15-68)||(48287751-48287804)
chr3 (1-120)||(29780965-29781082)
chr3 (4-120)||(36121891-36122005)
chr3 (28-79)||(49021804-49021855)
chr3 (4-65)||(21196194-21196254)
chr3 (17-112)||(47742364-47742459)
chr3 (1-79)||(48353064-48353140)
chr3 (15-65)||(12762631-12762681)
chr3 (21-79)||(29916955-29917013)
chr3 (21-79)||(29966108-29966166)
chr3 (1-113)||(26452616-26452726)
chr3 (23-68)||(52963254-52963299)
chr3 (36-76)||(5527444-5527484)
chr3 (23-79)||(44962113-44962169)
chr3 (85-117)||(51771354-51771386)
chr3 (53-121)||(52089820-52089888)
[»] chr8 (29 HSPs)
chr8 (1-123)||(43715942-43716062)
chr8 (16-120)||(33539486-33539590)
chr8 (1-119)||(25830133-25830249)
chr8 (1-121)||(67046-67164)
chr8 (15-121)||(35792118-35792224)
chr8 (1-121)||(12655990-12656108)
chr8 (1-113)||(41639691-41639803)
chr8 (1-113)||(42786551-42786663)
chr8 (1-113)||(6440149-6440259)
chr8 (1-113)||(35067228-35067338)
chr8 (1-113)||(5574323-5574433)
chr8 (1-118)||(7814476-7814596)
chr8 (28-121)||(3270766-3270859)
chr8 (17-110)||(33100367-33100460)
chr8 (1-118)||(7795188-7795308)
chr8 (29-113)||(39453210-39453294)
chr8 (1-90)||(7777098-7777183)
chr8 (23-113)||(3413086-3413176)
chr8 (1-118)||(8671444-8671559)
chr8 (44-121)||(36969560-36969637)
chr8 (1-113)||(45405599-45405709)
chr8 (51-119)||(12339046-12339113)
chr8 (16-80)||(42619907-42619971)
chr8 (1-119)||(38675671-38675787)
chr8 (15-79)||(6972234-6972298)
chr8 (15-66)||(10902784-10902835)
chr8 (23-112)||(36611973-36612062)
chr8 (4-114)||(10644694-10644803)
chr8 (17-65)||(12734953-12735001)
[»] chr2 (28 HSPs)
chr2 (1-120)||(45420203-45420320)
chr2 (1-120)||(12784283-12784402)
chr2 (15-121)||(3771451-3771557)
chr2 (1-116)||(4657369-4657482)
chr2 (4-120)||(17999564-17999678)
chr2 (23-119)||(1040601-1040697)
chr2 (1-113)||(42532632-42532742)
chr2 (1-120)||(29449279-29449395)
chr2 (1-120)||(40700263-40700380)
chr2 (1-113)||(7084608-7084718)
chr2 (36-113)||(21738511-21738588)
chr2 (15-113)||(19843564-19843662)
chr2 (25-113)||(26290744-26290832)
chr2 (1-79)||(33616533-33616611)
chr2 (30-113)||(43658605-43658688)
chr2 (1-113)||(12070915-12071025)
chr2 (38-121)||(4319809-4319892)
chr2 (4-114)||(5031993-5032102)
chr2 (1-120)||(14328449-14328566)
chr2 (1-80)||(18737800-18737877)
chr2 (44-120)||(40357973-40358049)
chr2 (1-79)||(40599208-40599282)
chr2 (36-79)||(6336351-6336394)
chr2 (16-79)||(45259216-45259279)
chr2 (15-121)||(27490616-27490722)
chr2 (46-91)||(18982951-18982996)
chr2 (1-120)||(36190907-36191025)
chr2 (44-112)||(39309518-39309586)
[»] scaffold0053 (1 HSPs)
scaffold0053 (1-119)||(12565-12681)
[»] chr5 (27 HSPs)
chr5 (1-119)||(22098323-22098439)
chr5 (432-538)||(27951239-27951345)
chr5 (199-281)||(27947316-27947396)
chr5 (1-122)||(16690567-16690686)
chr5 (17-118)||(32639125-32639226)
chr5 (15-119)||(38293245-38293350)
chr5 (5-113)||(38493696-38493803)
chr5 (1-119)||(40829482-40829598)
chr5 (15-116)||(40364648-40364749)
chr5 (17-113)||(9168061-9168156)
chr5 (1-113)||(884509-884619)
chr5 (364-411)||(27948235-27948282)
chr5 (43-111)||(14321850-14321918)
chr5 (53-104)||(26686996-26687047)
chr5 (53-104)||(26956727-26956778)
chr5 (314-362)||(27948169-27948219)
chr5 (53-111)||(34940751-34940809)
chr5 (1-120)||(4088511-4088628)
chr5 (4-114)||(6940042-6940151)
chr5 (1-113)||(22529038-22529150)
chr5 (1-68)||(41699521-41699586)
chr5 (1-113)||(6758683-6758794)
chr5 (1-63)||(27546131-27546193)
chr5 (4-120)||(41175593-41175707)
chr5 (4-115)||(15952937-15953046)
chr5 (4-114)||(9939324-9939433)
chr5 (4-114)||(18695388-18695497)
[»] chr7 (22 HSPs)
chr7 (1-113)||(35822868-35822978)
chr7 (23-110)||(44496699-44496786)
chr7 (15-119)||(31398204-31398308)
chr7 (23-111)||(41590415-41590503)
chr7 (1-120)||(48145592-48145697)
chr7 (1-121)||(26018108-26018226)
chr7 (1-79)||(42598135-42598211)
chr7 (23-115)||(41589977-41590066)
chr7 (1-79)||(40854582-40854658)
chr7 (1-113)||(36352477-36352588)
chr7 (1-113)||(41430045-41430155)
chr7 (1-113)||(42584870-42584980)
chr7 (17-110)||(44651126-44651220)
chr7 (1-121)||(46259979-46260095)
chr7 (1-113)||(34507099-34507209)
chr7 (4-109)||(46829549-46829653)
chr7 (1-77)||(18111540-18111615)
chr7 (5-91)||(19562262-19562348)
chr7 (4-115)||(3062400-3062509)
chr7 (2-121)||(7817704-7817821)
chr7 (4-114)||(1471183-1471292)
chr7 (29-81)||(47012495-47012547)
[»] scaffold0687 (1 HSPs)
scaffold0687 (1-118)||(7127-7247)
[»] scaffold0662 (1 HSPs)
scaffold0662 (17-113)||(1226-1322)
[»] scaffold0013 (1 HSPs)
scaffold0013 (15-77)||(94811-94873)


Alignment Details
Target: chr6 (Bit Score: 214; Significance: 1e-117; HSPs: 15)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 123 - 425
Target Start/End: Complemental strand, 34873156 - 34872855
Alignment:
Q  123 aacaatggctaatatata-tctatcatctaccttagtttactacggagacatcagttctatttcataattaaaaaccatacatgccgtttgtttttgaaa 221  Q
    |||||||||||||| ||| ||||||| ||||||||||||||||||||| |||||||||||||||||||| |||| |||||||||||||||||||||||||    
T  34873156 aacaatggctaatacataatctatcaactaccttagtttactacggaggcatcagttctatttcataatcaaaatccatacatgccgtttgtttttgaaa 34873057  T
Q  222 ttctcgtctttgcattatcatttcatctctcaaccatatatttatttcatctcaaccatannnnnnnnnnnnngaaagaagtctcaaccatatatagtgt 321  Q
    |||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||             |||||||||||||||||||||||||||    
T  34873056 ttctcgtctttgcattatcatttca--tctcaaccatatatttatttcatctcaaccatattttttgggttttgaaagaagtctcaaccatatatagtgt 34872959  T
Q  322 taattaattttttctatcaatgatctatgaaagacataagcataaaagtgctaattgaagttcttgtgggccgcaaagcgtcaccctacttcctagcttt 421  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||     
T  34872958 taattaattttttctatcaataatctatgaaagacataagcataaaagtgctaattgaagttcttgtgggccgcaaagcgtcaccctacttgctagctta 34872859  T
Q  422 tttg 425  Q
    ||||    
T  34872858 tttg 34872855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 146; E-Value: 1e-76
Query Start/End: Original strand, 419 - 592
Target Start/End: Complemental strand, 34872817 - 34872644
Alignment:
Q  419 ttttttgtgacaaattcaaatatagtatcaaaataattttaaattttatgtacaaaaatatgagttgtgtacattaaaataattaaataaaggacccgtt 518  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||    
T  34872817 ttttttgtgacaaattcaaatatagtatcaaaataattttaaattttatgtacaacaatatgagttgtgtacattaaaagaattaaataaaggacccgtt 34872718  T
Q  519 tgcaccctataattgttttcttttaagcttaattattgacatgttttatgtactttatgttcgtaggaaaaatg 592  Q
    ||||||||||||||||||||||||||||||| ||| | |||||||||  |||||||||||||||||||||||||    
T  34872717 tgcaccctataattgttttcttttaagcttagttactaacatgttttccgtactttatgttcgtaggaaaaatg 34872644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 1 - 120
Target Start/End: Original strand, 1376432 - 1376551
Alignment:
Q  1 atatttttactttatctctctatattactttgatatttgtgccaatacatatttttctttgtaaaaatgtggttgtcaatttagttgtcaagcaaattga 100  Q
    ||||||||||||||||||||| ||||||||| ||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  1376432 atatttttactttatctctctctattacttttatatttgtgtcaatacatatttttctttgtaaaaatgtggttgtccatttagttgtcaagcaaattga 1376531  T
Q  101 tgttcaaataacactactct 120  Q
    ||||||||||||||||||||    
T  1376532 tgttcaaataacactactct 1376551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 1 - 120
Target Start/End: Original strand, 1384180 - 1384299
Alignment:
Q  1 atatttttactttatctctctatattactttgatatttgtgccaatacatatttttctttgtaaaaatgtggttgtcaatttagttgtcaagcaaattga 100  Q
    ||||||||||||||||||||| ||||||||| ||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  1384180 atatttttactttatctctctctattacttttatatttgtgtcaatacatatttttctttgtaaaaatgtggttgtccatttagttgtcaagcaaattga 1384279  T
Q  101 tgttcaaataacactactct 120  Q
    ||||||||||||||||||||    
T  1384280 tgttcaaataacactactct 1384299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 1 - 118
Target Start/End: Original strand, 13423036 - 13423151
Alignment:
Q  1 atatttttactttatctctctatattactttgatatttgtgccaatacatatttttctttgtaaaaatgtggttgtcaatttagttgtcaagcaaattga 100  Q
    ||||||||||||| |||||||||  || |||  | ||||||||||||||||||||||||||||||||| | |||||| | || ||||||||  |||| ||    
T  13423036 atatttttactttctctctctat--tattttagtttttgtgccaatacatatttttctttgtaaaaatatagttgtccacttggttgtcaaataaatgga 13423133  T
Q  101 tgttcaaataacactact 118  Q
    ||||||||||||||||||    
T  13423134 tgttcaaataacactact 13423151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 15 - 120
Target Start/End: Original strand, 31869147 - 31869252
Alignment:
Q  15 tctctctatattactttgatatttgtgccaatacatatttttctttgtaaaaatgtggttgtcaatttagttgtcaagcaaattgatgttcaaataacac 114  Q
    ||||||| |||||||||||| || ||||||||||||||||| |||||||||||   |  |||| ||||  ||||||||||||| ||||||||||||||||    
T  31869147 tctctctctattactttgattttcgtgccaatacatattttcctttgtaaaaacaagagtgtctatttgattgtcaagcaaatagatgttcaaataacac 31869246  T
Q  115 tactct 120  Q
    ||||||    
T  31869247 tactct 31869252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 23 - 115
Target Start/End: Original strand, 27612962 - 27613054
Alignment:
Q  23 tattactttgatatttgtgccaatacatatttttctttgtaaaaatgtggttgtcaatttagttgtcaagcaaattgatgttcaaataacact 115  Q
    |||||||||||| || ||| ||||||||||||||||||||||| || |||||||| ||||  ||||||| ||||| |||||||||||||||||    
T  27612962 tattactttgattttcgtgtcaatacatatttttctttgtaaacatatggttgtccatttgattgtcaaacaaatagatgttcaaataacact 27613054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 23 - 120
Target Start/End: Original strand, 28630186 - 28630283
Alignment:
Q  23 tattactttgatatttgtgccaatacatatttttctttgtaaaaatgtggttgtcaatttagttgtcaagcaaattgatgttcaaataacactactct 120  Q
    |||||||||||| |||||||||| ||||  |||| ||||||||||| |||||||| ||||||||||||  ||||| |||||||| |||||| ||||||    
T  28630186 tattactttgatttttgtgccaacacatgcttttatttgtaaaaatatggttgtctatttagttgtcacacaaatagatgttcatataacattactct 28630283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 36 - 115
Target Start/End: Original strand, 33651121 - 33651200
Alignment:
Q  36 tttgtgccaatacatatttttctttgtaaaaatgtggttgtcaatttagttgtcaagcaaattgatgttcaaataacact 115  Q
    ||||| |||||||||| |||||||||||||||| |||||||| ||||  ||||||| ||||| |||||||||||||||||    
T  33651121 tttgtaccaatacataattttctttgtaaaaatatggttgtctatttgattgtcaaacaaatggatgttcaaataacact 33651200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 4 - 120
Target Start/End: Complemental strand, 6531184 - 6531067
Alignment:
Q  4 tttttactttatctctctat-attactttgatatttgtgccaatacata-tttttctttgtaaaaatgtggttgtcaatttagttgtcaagcaaattgat 101  Q
    |||||||||||||||||||| ||| ||||||| || |||| |||||||| ||||||||||||||  | ||||||||   |||||| |||| ||||| | |    
T  6531184 tttttactttatctctctattattgctttgattttcgtgcaaatacatactttttctttgtaaat-tatggttgtcccattagttatcaaccaaatggtt 6531086  T
Q  102 gttcaaataacactactct 120  Q
    |||||||||||||| ||||    
T  6531085 gttcaaataacactcctct 6531067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 55 - 120
Target Start/End: Complemental strand, 9083015 - 9082950
Alignment:
Q  55 ttctttgtaaaaatgtggttgtcaatttagttgtcaagcaaattgatgttcaaataacactactct 120  Q
    |||| |||||||||||||||||| |||| ||| |||   |||||||||||||||||||||||||||    
T  9083015 ttctgtgtaaaaatgtggttgtccatttggttatcacataaattgatgttcaaataacactactct 9082950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 59 - 119
Target Start/End: Original strand, 16337142 - 16337202
Alignment:
Q  59 ttgtaaaaatgtggttgtcaatttagttgtcaagcaaattgatgttcaaataacactactc 119  Q
    |||||||||| |||||||| |||| ||||||||  |||| |||||||||||||||||||||    
T  16337142 ttgtaaaaatatggttgtctatttggttgtcaattaaatggatgttcaaataacactactc 16337202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 23 - 118
Target Start/End: Complemental strand, 31760271 - 31760176
Alignment:
Q  23 tattactttgatatttgtgccaatacatatttttctttgtaaaaatgtggttgtcaatttagttgtcaagcaaattgatgttcaaataacactact 118  Q
    |||||||||| | ||| || ||||| |||  ||| |||||| ||| ||||||||  |||| |||||||| ||||| ||||||||||||||||||||    
T  31760271 tattactttggtttttatgtcaatatatacatttttttgtataaacgtggttgtttatttggttgtcaaacaaatggatgttcaaataacactact 31760176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 138 - 182
Target Start/End: Original strand, 9919200 - 9919244
Alignment:
Q  138 atatctatcatctaccttagtttactacggagacatcagttctat 182  Q
    |||||||||| ||||||||||||||||||||| ||||| ||||||    
T  9919200 atatctatcaactaccttagtttactacggaggcatcacttctat 9919244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 15 - 65
Target Start/End: Complemental strand, 12588367 - 12588317
Alignment:
Q  15 tctctctatattactttgatatttgtgccaatacatatttttctttgtaaa 65  Q
    ||||||| |||| ||||||| ||||||||| ||||||| ||||||||||||    
T  12588367 tctctctctattgctttgatttttgtgccactacatatatttctttgtaaa 12588317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 98; Significance: 6e-48; HSPs: 30)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 98; E-Value: 6e-48
Query Start/End: Original strand, 1 - 121
Target Start/End: Complemental strand, 12999826 - 12999708
Alignment:
Q  1 atatttttactttatctctctatattactttgatatttgtgccaatacatatttttctttgtaaaaatgtggttgtcaatttagttgtcaagcaaattga 100  Q
    ||||||||||||| ||| |||||  |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  12999826 atatttttactttctctttctat--tactttgatatttgtgccaatacatatttttctttgtaaaaatgtggttgtccatttagttgtcaagcaaattga 12999729  T
Q  101 tgttcaaataacactactcta 121  Q
    |||||||||||||||||||||    
T  12999728 tgttcaaataacactactcta 12999708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 1 - 118
Target Start/End: Original strand, 49931621 - 49931736
Alignment:
Q  1 atatttttactttatctctctatattactttgatatttgtgccaatacatatttttctttgtaaaaatgtggttgtcaatttagttgtcaagcaaattga 100  Q
    ||||||||||||||||||||||   |||||||||||||||||||||||||| ||||||||| ||||||||||||||| |||||||| |||||||||||||    
T  49931621 atatttttactttatctctctaa--tactttgatatttgtgccaatacatacttttctttggaaaaatgtggttgtccatttagttatcaagcaaattga 49931718  T
Q  101 tgttcaaataacactact 118  Q
    ||||||||||||||||||    
T  49931719 tgttcaaataacactact 49931736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 1 - 120
Target Start/End: Original strand, 30973620 - 30973737
Alignment:
Q  1 atatttttactttatctctctatattactttgatatttgtgccaatacatatttttctttgtaaaaatgtggttgtcaatttagttgtcaagcaaattga 100  Q
    ||||||||| ||| |||||||||  |||||||||||||||| ||||||||| ||||||||||||||||||| ||||| ||||||||||||||||||||||    
T  30973620 atatttttattttttctctctat--tactttgatatttgtgtcaatacatacttttctttgtaaaaatgtgattgtccatttagttgtcaagcaaattga 30973717  T
Q  101 tgttcaaataacactactct 120  Q
    ||||||||||||||||||||    
T  30973718 tgttcaaataacactactct 30973737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 15 - 121
Target Start/End: Original strand, 33076199 - 33076305
Alignment:
Q  15 tctctctatattactttgatatttgtgccaatacatatttttctttgtaaaaatgtggttgtcaatttagttgtcaagcaaattgatgttcaaataacac 114  Q
    ||||||| ||||||||||||||||||||||||||||| |||||||||||||| |||||||||| ||||| || |||||||||||||||||||||||||||    
T  33076199 tctctctctattactttgatatttgtgccaatacataattttctttgtaaaattgtggttgtccatttaattatcaagcaaattgatgttcaaataacac 33076298  T
Q  115 tactcta 121  Q
    | |||||    
T  33076299 tgctcta 33076305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 1 - 113
Target Start/End: Complemental strand, 49446801 - 49446687
Alignment:
Q  1 atatttttactttatctctctatattactttgatatttgtgccaatacata----tttttctttgtaaaaatgtggttgtcaatttagttgtcaagcaaa 96  Q
    ||||||||||||| |||||||||  ||||||||||||||||||||||||||    |||||||||||||||||||| ||||| ||||||||||||||||||    
T  49446801 atatttttactttctctctctat--tactttgatatttgtgccaatacatacatatttttctttgtaaaaatgtgattgtccatttagttgtcaagcaaa 49446704  T
Q  97 ttgatgttcaaataaca 113  Q
    |||||||||||||||||    
T  49446703 ttgatgttcaaataaca 49446687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 17 - 120
Target Start/End: Original strand, 30536071 - 30536172
Alignment:
Q  17 tctctatattactttgatatttgtgccaatacatatttttctttgtaaaaatgtggttgtcaatttagttgtcaagcaaattgatgttcaaataacacta 116  Q
    ||||| |||||||||||||||||||||||  |||| |||||||||||||||||||||||||  ||||||||| |||||||||||||||||||||||||||    
T  30536071 tctctctattactttgatatttgtgccaa--catacttttctttgtaaaaatgtggttgtccgtttagttgttaagcaaattgatgttcaaataacacta 30536168  T
Q  117 ctct 120  Q
    ||||    
T  30536169 ctct 30536172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 36 - 111
Target Start/End: Complemental strand, 49020376 - 49020301
Alignment:
Q  36 tttgtgccaatacatatttttctttgtaaaaatgtggttgtcaatttagttgtcaagcaaattgatgttcaaataa 111  Q
    |||||||||||| |||||||||||||||||||| ||||||||||||| |||||||| |||||||||||||||||||    
T  49020376 tttgtgccaatatatatttttctttgtaaaaatatggttgtcaatttggttgtcaaccaaattgatgttcaaataa 49020301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 1 - 113
Target Start/End: Complemental strand, 34818048 - 34817938
Alignment:
Q  1 atatttttactttatctctctatattactttgatatttgtgccaatacatatttttctttgtaaaaatgtggttgtcaatttagttgtcaagcaaattga 100  Q
    ||||||||||||| ||| |||||  | ||||||| |||||||||| |||||||||||||||||||||| ||||||||||| |  |||||||  |||||||    
T  34818048 atatttttactttctctttctat--tgctttgatttttgtgccaacacatatttttctttgtaaaaatatggttgtcaatatgattgtcaactaaattga 34817951  T
Q  101 tgttcaaataaca 113  Q
    |||||||||||||    
T  34817950 tgttcaaataaca 34817938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 1 - 113
Target Start/End: Original strand, 29359811 - 29359921
Alignment:
Q  1 atatttttactttatctctctatattactttgatatttgtgccaatacatatttttctttgtaaaaatgtggttgtcaatttagttgtcaagcaaattga 100  Q
    ||||||||||||| |||||||||  | ||||  | |||||| ||| ||||| |||||||| ||||||| ||||||||||| | |||||||| ||||||||    
T  29359811 atatttttactttttctctctat--tgcttttgtttttgtgtcaacacatacttttctttataaaaatatggttgtcaatgtggttgtcaatcaaattga 29359908  T
Q  101 tgttcaaataaca 113  Q
    |||||||||||||    
T  29359909 tgttcaaataaca 29359921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 23 - 120
Target Start/End: Complemental strand, 26501270 - 26501173
Alignment:
Q  23 tattactttgatatttgtgccaatacatatttttctttgtaaaaatgtggttgtcaatttagttgtcaagcaaattgatgttcaaataacactactct 120  Q
    |||||||||| | | |||||||||||| |  ||||||| ||||||||||||||||||||| ||||| | | | ||||||||||||||||||| |||||    
T  26501270 tattactttggtttctgtgccaatacacacatttctttctaaaaatgtggttgtcaatttggttgtaacgtacattgatgttcaaataacaccactct 26501173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 23 - 121
Target Start/End: Original strand, 11947883 - 11947981
Alignment:
Q  23 tattactttgatatttgtgccaatacatatttttctttgtaaaaatgtggttgtcaatttagttgtcaagcaaattgatgttcaaataacactactcta 121  Q
    ||||||||| || ||||||| || ||||  |||| ||||||||||| |||||||| ||||||||||||  ||||| |||||||| |||||| |||||||    
T  11947883 tattactttaatttttgtgcaaacacatgcttttatttgtaaaaatatggttgtctatttagttgtcacacaaatagatgttcatataacattactcta 11947981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 5 - 113
Target Start/End: Original strand, 30745058 - 30745164
Alignment:
Q  5 ttttactttatctctctatattactttgatatttgtgccaatacatatttttctttgtaaaaatgtggttgtcaatttagttgtcaagcaaattgatgtt 104  Q
    |||||||||||||||||||  |  |||| | |||||| ||||||||| |||||||||||| | | |||||||| || | |||||||| |||||| |||||    
T  30745058 ttttactttatctctctattgt--tttggtttttgtgtcaatacataattttctttgtaagagtatggttgtctatatggttgtcaatcaaattaatgtt 30745155  T
Q  105 caaataaca 113  Q
    |||||||||    
T  30745156 caaataaca 30745164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 5 - 113
Target Start/End: Original strand, 30766509 - 30766615
Alignment:
Q  5 ttttactttatctctctatattactttgatatttgtgccaatacatatttttctttgtaaaaatgtggttgtcaatttagttgtcaagcaaattgatgtt 104  Q
    |||||||||||||||||||  |  |||| | |||||| ||||||||| |||||||||||| | | |||||||| || | |||||||| |||||| |||||    
T  30766509 ttttactttatctctctattgt--tttggtttttgtgtcaatacataattttctttgtaagagtatggttgtctatatggttgtcaatcaaattaatgtt 30766606  T
Q  105 caaataaca 113  Q
    |||||||||    
T  30766607 caaataaca 30766615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 21 - 113
Target Start/End: Complemental strand, 32831153 - 32831061
Alignment:
Q  21 tatattactttgatatttgtgccaatacatatttttctttgtaaaaatgtggttgtcaatttagttgtcaagcaaattgatgttcaaataaca 113  Q
    |||||||||||||| ||  || |||| |||| |||||||||||||||  |||||||| |||| ||||||| |||||| |||||||||| ||||    
T  32831153 tatattactttgattttcatgtcaatccatacttttctttgtaaaaacatggttgtctatttggttgtcaggcaaatagatgttcaaacaaca 32831061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 80
Target Start/End: Complemental strand, 740959 - 740880
Alignment:
Q  1 atatttttactttatctctctatattactttgatatttgtgccaatacatatttttctttgtaaaaatgtggttgtcaat 80  Q
    ||||||||||||| ||||||| ||||| |||| | ||||||  |||||||| |||||||||||||| | |||||||||||    
T  740959 atatttttactttctctctctctattattttggtttttgtgttaatacataattttctttgtaaaattatggttgtcaat 740880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 43 - 113
Target Start/End: Original strand, 29877405 - 29877475
Alignment:
Q  43 caatacatatttttctttgtaaaaatgtggttgtcaatttagttgtcaagcaaattgatgttcaaataaca 113  Q
    ||||||||| |||||||||||||||| |||||||| || |  |||||||  ||||||||||||||||||||    
T  29877405 caatacataattttctttgtaaaaatatggttgtccatatgattgtcaataaaattgatgttcaaataaca 29877475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 1 - 122
Target Start/End: Complemental strand, 30519628 - 30519509
Alignment:
Q  1 atatttttactttatctctctatattactttgatatttgtgccaatacatatttttctttgtaaaaatgtggttgtcaatttagttgtcaagcaaattga 100  Q
    ||||||||||||||||||| |||  | ||||| | || |||  |||||||  |||||||||||||||  |||||||| || | |||||||| || |||||    
T  30519628 atatttttactttatctctttat--tgctttggttttcgtgttaatacatgattttctttgtaaaaagatggttgtccatgtggttgtcaatcacattga 30519531  T
Q  101 tgttcaaataacactactctag 122  Q
    ||||||||||||| | ||||||    
T  30519530 tgttcaaataacattgctctag 30519509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 80
Target Start/End: Original strand, 49570064 - 49570141
Alignment:
Q  1 atatttttactttatctctctatattactttgatatttgtgccaatacatatttttctttgtaaaaatgtggttgtcaat 80  Q
    ||||||||||||| |||||||||  |  |||||| |||||||||| ||||| |||||||| ||||||| |||||||||||    
T  49570064 atatttttactttctctctctattgt--tttgatttttgtgccaacacatacttttctttataaaaatatggttgtcaat 49570141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 52 - 114
Target Start/End: Complemental strand, 4629703 - 4629641
Alignment:
Q  52 tttttctttgtaaaaatgtggttgtcaatttagttgtcaagcaaattgatgttcaaataacac 114  Q
    |||||||||||||| ||||||||||||| | ||||||||| | ||| | ||||||||||||||    
T  4629703 tttttctttgtaaagatgtggttgtcaaataagttgtcaatctaatagttgttcaaataacac 4629641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 15 - 77
Target Start/End: Original strand, 50242390 - 50242452
Alignment:
Q  15 tctctctatattactttgatatttgtgccaatacatatttttctttgtaaaaatgtggttgtc 77  Q
    ||||||| |||||||||| | || ||||||||||||| ||||||||||||| || ||||||||    
T  50242390 tctctctctattactttggttttcgtgccaatacatacttttctttgtaaatatatggttgtc 50242452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 4 - 121
Target Start/End: Complemental strand, 50775157 - 50775042
Alignment:
Q  4 tttttactttatctctctatattactttgatatttgtgccaatacatatttttctttgtaaaaatgtggttgtcaatttagttgtcaagcaaattgatgt 103  Q
    ||||||||||||||||||||  | ||||| | |||||| ||| |||| ||||||||||||||| | |||||||||    | ||||||| ||||| |  ||    
T  50775157 tttttactttatctctctat--tgctttggtttttgtgtcaacacatctttttctttgtaaaattatggttgtcacaaaatttgtcaatcaaatggtcgt 50775060  T
Q  104 tcaaataacactactcta 121  Q
    ||||||||||| ||||||    
T  50775059 tcaaataacacaactcta 50775042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 23 - 111
Target Start/End: Original strand, 1689477 - 1689565
Alignment:
Q  23 tattactttgatatttgtgccaatacatatttttctttgtaaaaatgtggttgtcaatttagttgtcaagcaaattgatgttcaaataa 111  Q
    |||||||||||| |||||| ||| ||||| |||| ||| ||||||| |||||||| || |||||||||  |||||  ||||||| ||||    
T  1689477 tattactttgatttttgtgtcaacacatacttttatttataaaaatatggttgtctatatagttgtcacacaaataaatgttcatataa 1689565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 23 - 79
Target Start/End: Complemental strand, 36750468 - 36750412
Alignment:
Q  23 tattactttgatatttgtgccaatacatatttttctttgtaaaaatgtggttgtcaa 79  Q
    |||| ||||| | |||||||||| ||||| |||||||||||||||| ||||||||||    
T  36750468 tattgctttgttttttgtgccaacacatacttttctttgtaaaaatatggttgtcaa 36750412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 79
Target Start/End: Complemental strand, 23665729 - 23665653
Alignment:
Q  1 atatttttactttatctctctatattactttgatatttgtgccaatacatatttttctttgtaaaaatgtggttgtcaa 79  Q
    ||||||||||||| |||||| ||  | ||||| | |||||| ||| ||||| |||||||||||||||| ||||||||||    
T  23665729 atatttttactttctctctcaat--tgctttggtttttgtgtcaacacatacttttctttgtaaaaatatggttgtcaa 23665653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 53 - 123
Target Start/End: Original strand, 11597754 - 11597824
Alignment:
Q  53 ttttctttgtaaaaatgtggttgtcaatttagttgtcaagcaaattgatgttcaaataacactactctaga 123  Q
    |||||||||||||  | ||||||||   | ||||||||||||||| ||||||||||||||||  |||||||    
T  11597754 ttttctttgtaaatctatggttgtcccataagttgtcaagcaaatggatgttcaaataacacacctctaga 11597824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 23 - 65
Target Start/End: Complemental strand, 44517945 - 44517903
Alignment:
Q  23 tattactttgatatttgtgccaatacatatttttctttgtaaa 65  Q
    ||||| |||||| |||||| |||||||||||||||||||||||    
T  44517945 tattattttgatttttgtgtcaatacatatttttctttgtaaa 44517903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 15 - 120
Target Start/End: Original strand, 18434874 - 18434979
Alignment:
Q  15 tctctctatattactttgatatttgtgccaatacatatttttctttgtaaaaatgtggttgtcaatttagttgtcaagcaaattgatgttcaaataacac 114  Q
    ||||||| ||||  |||||| |||||||||||||||  ||||||||| |||| | |||||||||    ||||||||   |||| ||| ||||||||||||    
T  18434874 tctctctttattgttttgatttttgtgccaatacatcattttctttgcaaaattttggttgtcacaaaagttgtcatctaaatagattttcaaataacac 18434973  T
Q  115 tactct 120  Q
     |||||    
T  18434974 aactct 18434979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 113
Target Start/End: Original strand, 52437562 - 52437672
Alignment:
Q  1 atatttttactttatctctctatattactttgatatttgtgccaatacatatttttctttgtaaaaatgtggttgtcaatttagttgtcaagcaaattga 100  Q
    ||||||||||||||||| ||  |||| ||||||| || ||  ||||||||| |||| ||||||||||  |||||||| || |  ||||||| || |||||    
T  52437562 atatttttactttatctttc--tattgctttgattttcgtatcaatacataattttatttgtaaaaagatggttgtccatgtgattgtcaatcacattga 52437659  T
Q  101 tgttcaaataaca 113  Q
    | || ||||||||    
T  52437660 tatttaaataaca 52437672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 1 - 80
Target Start/End: Complemental strand, 5771248 - 5771171
Alignment:
Q  1 atatttttactttatctctctatattactttgatatttgtgccaatacatatttttctttgtaaaaatgtggttgtcaat 80  Q
    ||||||||||||||||| |  ||||||||||| | || ||   |||||||| ||||||||||||| || |||||||||||    
T  5771248 atatttttactttatctat--atattactttggttttcgttttaatacataattttctttgtaaagatatggttgtcaat 5771171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 15 - 63
Target Start/End: Complemental strand, 17082734 - 17082686
Alignment:
Q  15 tctctctatattactttgatatttgtgccaatacatatttttctttgta 63  Q
    ||||||| |||||||||||||||||||||| ||| ||  ||||||||||    
T  17082734 tctctctctattactttgatatttgtgccactacctaaatttctttgta 17082686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 93; Significance: 5e-45; HSPs: 30)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 1 - 120
Target Start/End: Complemental strand, 1795985 - 1795868
Alignment:
Q  1 atatttttactttatctctctatattactttgatatttgtgccaatacatatttttctttgtaaaaatgtggttgtcaatttagttgtcaagcaaattga 100  Q
    |||||||||||||||||||||||  |||||||||||||||||||||||||| ||||||| ||||||||||||||||| |||||||||| |||||||||||    
T  1795985 atatttttactttatctctctat--tactttgatatttgtgccaatacatacttttcttggtaaaaatgtggttgtccatttagttgttaagcaaattga 1795888  T
Q  101 tgttcaaataacactactct 120  Q
    ||||||||||||||||||||    
T  1795887 tgttcaaataacactactct 1795868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 1 - 120
Target Start/End: Original strand, 49585062 - 49585179
Alignment:
Q  1 atatttttactttatctctctatattactttgatatttgtgccaatacatatttttctttgtaaaaatgtggttgtcaatttagttgtcaagcaaattga 100  Q
    ||||||||||||| |||||||||  |||||||||||||||||||||||||| ||||||| ||||||||||||||||| |||||||||||||||||||| |    
T  49585062 atatttttactttctctctctat--tactttgatatttgtgccaatacatacttttcttggtaaaaatgtggttgtccatttagttgtcaagcaaattaa 49585159  T
Q  101 tgttcaaataacactactct 120  Q
    ||||||||||||||||||||    
T  49585160 tgttcaaataacactactct 49585179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 1 - 119
Target Start/End: Original strand, 50980658 - 50980774
Alignment:
Q  1 atatttttactttatctctctatattactttgatatttgtgccaatacatatttttctttgtaaaaatgtggttgtcaatttagttgtcaagcaaattga 100  Q
    |||||||||||||  |||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||| ||||||||||| ||||||||||    
T  50980658 atatttttacttt--ctctctatattactttgatatttgtgccaatacatacttttctttgtaaaaatgtgattgtccatttagttgtccagcaaattga 50980755  T
Q  101 tgttcaaataacactactc 119  Q
    |||| |||||||| |||||    
T  50980756 tgtttaaataacattactc 50980774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 1 - 119
Target Start/End: Complemental strand, 11546904 - 11546788
Alignment:
Q  1 atatttttactttatctctctatattactttgatatttgtgccaatacatatttttctttgtaaaaatgtggttgtcaatttagttgtcaagcaaattga 100  Q
    ||||||||||||| |||||||||  |||||||||||||||||||||||||| |||| |||||||||||||||||||| ||||  |||||||| |||||||    
T  11546904 atatttttactttctctctctat--tactttgatatttgtgccaatacataattttttttgtaaaaatgtggttgtccatttgattgtcaagtaaattga 11546807  T
Q  101 tgttcaaataacactactc 119  Q
    |||||||||||||||||||    
T  11546806 tgttcaaataacactactc 11546788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 2 - 111
Target Start/End: Original strand, 48649587 - 48649694
Alignment:
Q  2 tatttttactttatctctctatattactttgatatttgtgccaatacatatttttctttgtaaaaatgtggttgtcaatttagttgtcaagcaaattgat 101  Q
    |||||||||||| |||||||||  |||||||||||||||  ||||||||| |||||||||| |||||||||||||| ||||||||||||| |||||||||    
T  48649587 tatttttactttttctctctat--tactttgatatttgtttcaatacatacttttctttgttaaaatgtggttgtctatttagttgtcaaacaaattgat 48649684  T
Q  102 gttcaaataa 111  Q
    ||||||||||    
T  48649685 gttcaaataa 48649694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 15 - 119
Target Start/End: Complemental strand, 55609156 - 55609052
Alignment:
Q  15 tctctctatattactttgatatttgtgccaatacatatttttctttgtaaaaatgtggttgtcaatttagttgtcaagcaaattgatgttcaaataacac 114  Q
    ||||||| |||||||||||| || |||||||||||||||||||||||||||||   ||||||| |||| |||||||||||||| ||||||||||||||||    
T  55609156 tctctctctattactttgattttcgtgccaatacatatttttctttgtaaaaacaaggttgtctatttggttgtcaagcaaatagatgttcaaataacac 55609057  T
Q  115 tactc 119  Q
    |||||    
T  55609056 tactc 55609052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 15 - 118
Target Start/End: Original strand, 193612 - 193715
Alignment:
Q  15 tctctctatattactttgatatttgtgccaatacatatttttctttgtaaaaatgtggttgtcaatttagttgtcaagcaaattgatgttcaaataacac 114  Q
    ||||||| |||||||||||| || ||| |||||||||||||||||||||||||  || ||||| |||| |||||||||||||| ||||||||||||||||    
T  193612 tctctctctattactttgattttcgtgtcaatacatatttttctttgtaaaaacatgattgtctatttggttgtcaagcaaatagatgttcaaataacac 193711  T
Q  115 tact 118  Q
    ||||    
T  193712 tact 193715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 1 - 119
Target Start/End: Complemental strand, 44257733 - 44257618
Alignment:
Q  1 atatttttactttatctctctatattactttgatatttgtgccaatacatatttttctttgtaaaaatgtggttgtcaatttagttgtcaagcaaattga 100  Q
    ||||||||||||| |||||||||  || |||||||||||||  |||||||| |||||||| |||||||||| ||||| ||||||||||||| ||||||||    
T  44257733 atatttttactttctctctctat--tattttgatatttgtgttaatacatacttttctttataaaaatgtgattgtccatttagttgtcaaacaaattga 44257636  T
Q  101 tgttcaaataacactactc 119  Q
    ||||||||| |||||||||    
T  44257635 tgttcaaat-acactactc 44257618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 1 - 120
Target Start/End: Complemental strand, 36123463 - 36123347
Alignment:
Q  1 atatttttactttatctctctatattactttgatatttgtgccaatacatatttttctttgtaaaaatgtggttgtcaatttagttgtcaagcaaattga 100  Q
    ||||||||||||| |||||||||  ||||||||| ||||||| ||| |||| |||||||||||||||  || ||||| ||||  ||||||||||||| ||    
T  36123463 atatttttactttctctctctat--tactttgatttttgtgcaaatgcatacttttctttgtaaaaacatg-ttgtctatttgattgtcaagcaaataga 36123367  T
Q  101 tgttcaaataacactactct 120  Q
    ||||||||||||||||||||    
T  36123366 tgttcaaataacactactct 36123347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 1 - 113
Target Start/End: Original strand, 16019544 - 16019654
Alignment:
Q  1 atatttttactttatctctctatattactttgatatttgtgccaatacatatttttctttgtaaaaatgtggttgtcaatttagttgtcaagcaaattga 100  Q
    ||||||||||||| |||||||||  | ||||||| |||||| |||  ||||||||||||| ||||||| ||||||||||| |  ||||||| ||||||||    
T  16019544 atatttttactttctctctctat--tgctttgatttttgtgtcaacgcatatttttctttataaaaatatggttgtcaatatgcttgtcaatcaaattga 16019641  T
Q  101 tgttcaaataaca 113  Q
    |||||||||||||    
T  16019642 tgttcaaataaca 16019654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 36 - 119
Target Start/End: Complemental strand, 19165403 - 19165319
Alignment:
Q  36 tttgtgccaatacatatttttctttgtaaaaatgtggttgtcaatt-tagttgtcaagcaaattgatgttcaaataacactactc 119  Q
    ||||||||||||||||||||||||||||||||| |||||||| |||  | ||||||| |||||||||||||||||||||| ||||    
T  19165403 tttgtgccaatacatatttttctttgtaaaaatatggttgtccattagatttgtcaaacaaattgatgttcaaataacacaactc 19165319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 17 - 113
Target Start/End: Original strand, 47015087 - 47015183
Alignment:
Q  17 tctctatattactttgatatttgtgccaatacatatttttctttgtaaaaatgtggttgtcaatttagttgtcaagcaaattgatgttcaaataaca 113  Q
    ||||| |||| ||||| | |||||||||||| ||| |||||||||||||||| || |||||||| | |||||||| |||| ||||||||||||||||    
T  47015087 tctctctattgctttggtttttgtgccaatagatacttttctttgtaaaaatatgattgtcaatgtggttgtcaaccaaactgatgttcaaataaca 47015183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 1 - 115
Target Start/End: Original strand, 32223999 - 32224110
Alignment:
Q  1 atatttttactttatctctctatattactttgatatttgtgccaatacatatttttctttgtaaaaatgtggttgtcaatttagttgtcaagcaaattga 100  Q
    |||||||||||||  ||||||||  || ||| || ||||||||||| |||||||| |||||||||||  ||||| || ||||||||||||||||||| ||    
T  32223999 atatttttacttttactctctat--tattttaatttttgtgccaatgcatatttt-ctttgtaaaaacatggttatctatttagttgtcaagcaaataga 32224095  T
Q  101 tgttcaaataacact 115  Q
    ||||| |||||||||    
T  32224096 tgttcgaataacact 32224110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 1 - 113
Target Start/End: Original strand, 15522422 - 15522532
Alignment:
Q  1 atatttttactttatctctctatattactttgatatttgtgccaatacatatttttctttgtaaaaatgtggttgtcaatttagttgtcaagcaaattga 100  Q
    |||||||||||||||||||  ||||| ||||| | || ||| ||||||||  |||||||||||||||  |||||||| || | |||||||| || |||||    
T  15522422 atatttttactttatctct--atattgctttggttttcgtgtcaatacatgattttctttgtaaaaagatggttgtccatgtggttgtcaatcacattga 15522519  T
Q  101 tgttcaaataaca 113  Q
    |||||||||||||    
T  15522520 tgttcaaataaca 15522532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 15 - 104
Target Start/End: Complemental strand, 46665186 - 46665097
Alignment:
Q  15 tctctctatattactttgatatttgtgccaatacatatttttctttgtaaaaatgtggttgtcaatttagttgtcaagcaaattgatgtt 104  Q
    ||||||| | || ||||||| ||| |||||||||||| ||||||||||||| || ||||||||||||| |||||||| ||| ||||||||    
T  46665186 tctctctcttttgctttgatttttatgccaatacatacttttctttgtaaatatatggttgtcaatttggttgtcaatcaagttgatgtt 46665097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 39 - 119
Target Start/End: Original strand, 34363655 - 34363735
Alignment:
Q  39 gtgccaatacatatttttctttgtaaaaatgtggttgtcaatttagttgtcaagcaaattgatgttcaaataacactactc 119  Q
    ||||||||||||| |||||||||||| ||||||||||||  || || |||||| |||||  ||||||||||||||| ||||    
T  34363655 gtgccaatacatacttttctttgtaataatgtggttgtctgttaagctgtcaaacaaataaatgttcaaataacacaactc 34363735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 4 - 78
Target Start/End: Original strand, 39478505 - 39478579
Alignment:
Q  4 tttttactttatctctctatattactttgatatttgtgccaatacatatttttctttgtaaaaatgtggttgtca 78  Q
    |||||||||| | |||||||||||||||||| |||||| |||||| |  |||||||||||||| | |||||||||    
T  39478505 tttttactttctttctctatattactttgatttttgtgtcaatacctcattttctttgtaaaattttggttgtca 39478579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 1 - 113
Target Start/End: Complemental strand, 34757912 - 34757802
Alignment:
Q  1 atatttttactttatctctctatattactttgatatttgtgccaatacatatttttctttgtaaaaatgtggttgtcaatttagttgtcaagcaaattga 100  Q
    ||||||||||||| ||| |||||  |  |||||| |||||||||| |||| ||||||||||||||||| || |||||| | |  ||||||| ||||||||    
T  34757912 atatttttactttctctttctat--tgatttgatttttgtgccaacacatgtttttctttgtaaaaatatgattgtcagtgtgattgtcaatcaaattga 34757815  T
Q  101 tgttcaaataaca 113  Q
    | || ||||||||    
T  34757814 tatttaaataaca 34757802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 1 - 113
Target Start/End: Complemental strand, 34759186 - 34759076
Alignment:
Q  1 atatttttactttatctctctatattactttgatatttgtgccaatacatatttttctttgtaaaaatgtggttgtcaatttagttgtcaagcaaattga 100  Q
    ||||||||||||| ||| |||||  |  |||||| |||||||||| |||| ||||||||||||||||| || |||||| | |  ||||||| ||||||||    
T  34759186 atatttttactttctctttctat--tgatttgatttttgtgccaacacatgtttttctttgtaaaaatatgattgtcagtgtgattgtcaatcaaattga 34759089  T
Q  101 tgttcaaataaca 113  Q
    | || ||||||||    
T  34759088 tatttaaataaca 34759076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 78
Target Start/End: Complemental strand, 10474116 - 10474041
Alignment:
Q  1 atatttttactttatctctctatattactttgatatttgtgccaatacatatttttctttgtaaaaatgtggttgtca 78  Q
    ||||||||||||| |||||||||  ||||||||| |||||| |||||| | ||||||||||||||  | |||||||||    
T  10474116 atatttttactttttctctctat--tactttgatttttgtgtcaatacttctttttctttgtaaatttatggttgtca 10474041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 15 - 121
Target Start/End: Complemental strand, 50831747 - 50831641
Alignment:
Q  15 tctctctatattactttgatatttgtgccaatacatatttttctttgtaaaaatgtggttgtcaatttagttgtcaagcaaattgatgttcaaataacac 114  Q
    ||||||| |||| ||||||| |||||| ||| || | ||||||||||||||| | ||||||||     ||||||||| ||||| | ||||||||||||||    
T  50831747 tctctctctattgctttgatttttgtgtcaagacctctttttctttgtaaaattatggttgtcccaaaagttgtcaatcaaatggttgttcaaataacac 50831648  T
Q  115 tactcta 121  Q
     ||||||    
T  50831647 aactcta 50831641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 1 - 113
Target Start/End: Complemental strand, 31468992 - 31468882
Alignment:
Q  1 atatttttactttatctctctatattactttgatatttgtgccaatacatatttttctttgtaaaaatgtggttgtcaatttagttgtcaagcaaattga 100  Q
    ||||||||||||||| |||||||  ||||||  | || ||| ||||||||  |||||||||||||||  || ||||| || | |||||||| || |||||    
T  31468992 atatttttactttatttctctat--tactttagttttcgtgtcaatacatgattttctttgtaaaaagatgattgtctatatggttgtcaatcacattga 31468895  T
Q  101 tgttcaaataaca 113  Q
    | |||||||||||    
T  31468894 tattcaaataaca 31468882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 4 - 120
Target Start/End: Complemental strand, 624313 - 624198
Alignment:
Q  4 tttttactttatctctctatattactttgatatttgtgccaatac-atatttttctttgtaaaaatgtggttgtcaatttagttgtcaagcaaatt-gat 101  Q
    ||||||||||||||||||||  | || || | || |||||||||| |  ||||||||||||||||| |||||||||| | ||||||| | |||||| | |    
T  624313 tttttactttatctctctat--tgctatggttttcgtgccaataccacttttttctttgtaaaaatatggttgtcaaataagttgtc-accaaattagtt 624217  T
Q  102 gttcaaataacactactct 120  Q
    |||||||||||||| ||||    
T  624216 gttcaaataacacttctct 624198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 4 - 120
Target Start/End: Complemental strand, 9118865 - 9118751
Alignment:
Q  4 tttttactttatctctctatattactttgatatttgtgccaata-catatttttctttgtaaaaatgtggttgtcaatttagttgtcaagcaaatt-gat 101  Q
    |||||||||||||||||  |||| || |||| || ||||||||| ||| ||||||||||| ||||| |||||||||| | ||||||| | |||||| | |    
T  9118865 tttttactttatctctc--tattgctatgattttcgtgccaataccatttttttctttgt-aaaatatggttgtcaaataagttgtc-accaaattggtt 9118770  T
Q  102 gttcaaataacactactct 120  Q
    |||||||||||||| ||||    
T  9118769 gttcaaataacactcctct 9118751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 4 - 65
Target Start/End: Original strand, 12138923 - 12138983
Alignment:
Q  4 tttttactttatctctctatattactttgatatttgtgccaatacata-tttttctttgtaaa 65  Q
    |||||||||||||||||  |||||||||||| ||||||| ||||| || ||||||||||||||    
T  12138923 tttttactttatctctc--tattactttgatttttgtgcaaatacctactttttctttgtaaa 12138983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 120
Target Start/End: Original strand, 20118849 - 20118968
Alignment:
Q  1 atatttttactttatctctctatattactttgatatttgtgccaatacatatttttctttgtaaaaatgtggttgtcaatttagttgtcaagcaaattga 100  Q
    ||||||||||||| | ||||||| |||||||  | || ||  ||||||||| |||||||| |||||||   |||||| | || |||||||| |||||  |    
T  20118849 atatttttactttctatctctattttactttagttttcgtatcaatacataattttctttataaaaataacgttgtccaattggttgtcaaacaaataaa 20118948  T
Q  101 tgttcaaataacactactct 120  Q
    | ||||||||||| ||||||    
T  20118949 tattcaaataacagtactct 20118968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 19232137 - 19232065
Alignment:
Q  1 atatttttactttatctctctatattactttgatatttgtgccaatacatatttttctttgtaaaaatgtggttgt 76  Q
    ||||||||||||| |||||||||  | ||||||| ||||||||||||| | |||||||||| |||| | |||||||    
T  19232137 atatttttactttctctctctat--tgctttgatttttgtgccaatac-tttttttctttgcaaaattttggttgt 19232065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 15 - 91
Target Start/End: Complemental strand, 31574931 - 31574855
Alignment:
Q  15 tctctctatattactttgatatttgtgccaatacatatttttctttgtaaaaatgtggttgtcaatttagttgtcaa 91  Q
    ||||||| |||| ||||||| |||||  ||||||||  |||||||||||||||  |||||||| || | ||||||||    
T  31574931 tctctctctattgctttgatttttgtatcaatacatgattttctttgtaaaaagatggttgtccatgtggttgtcaa 31574855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 23 - 119
Target Start/End: Original strand, 42491161 - 42491257
Alignment:
Q  23 tattactttgatatttgtgccaatacatatttttctttgtaaaaatgtggttgtcaatttagttgtcaagcaaattgatgttcaaataacactactc 119  Q
    |||| ||||| | ||||||||||||| | ||||||||||| ||| | ||||||||     ||||||||| ||||| | |||||||||||||| ||||    
T  42491161 tattgctttggtttttgtgccaatacctctttttctttgtgaaattatggttgtcccaaaagttgtcaatcaaatggttgttcaaataacacaactc 42491257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 4 - 114
Target Start/End: Original strand, 42815474 - 42815583
Alignment:
Q  4 tttttactttatctctctatattactttgatatttgtgccaatacatatttttc-tttgtaaaaatgtggttgtcaatttagttgtcaagcaaattgatg 102  Q
    ||||||||||||||||||||  | ||||||| || |||| || || || ||||| ||||||||  | |||||||||| | ||||||| | ||||| | ||    
T  42815474 tttttactttatctctctat--tgctttgattttcgtgcaaaaacctacttttcctttgtaaatttatggttgtcaaataagttgtctatcaaatggttg 42815571  T
Q  103 ttcaaataacac 114  Q
    ||||||||||||    
T  42815572 ttcaaataacac 42815583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 93; Significance: 5e-45; HSPs: 36)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 1 - 120
Target Start/End: Complemental strand, 49761190 - 49761073
Alignment:
Q  1 atatttttactttatctctctatattactttgatatttgtgccaatacatatttttctttgtaaaaatgtggttgtcaatttagttgtcaagcaaattga 100  Q
    ||||||||||||| ||| |||||  |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  49761190 atatttttactttctctttctat--tactttgatatttgtgccaatacatatttttctttgtaaaaatgtggttgtccatttagttgtcaagcaaattga 49761093  T
Q  101 tgttcaaataacactactct 120  Q
    |||| |||||||||||||||    
T  49761092 tgttgaaataacactactct 49761073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 86; E-Value: 8e-41
Query Start/End: Original strand, 15 - 120
Target Start/End: Complemental strand, 37894233 - 37894128
Alignment:
Q  15 tctctctatattactttgatatttgtgccaatacatatttttctttgtaaaaatgtggttgtcaatttagttgtcaagcaaattgatgttcaaataacac 114  Q
    ||||||| ||||||||||||||||||| ||||||||| ||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  37894233 tctctctctattactttgatatttgtgtcaatacatacttttcttggtaaaaatgtggttgtccatttagttgtcaagcaaattgatgttcaaataacac 37894134  T
Q  115 tactct 120  Q
    ||||||    
T  37894133 tactct 37894128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 3 - 118
Target Start/End: Complemental strand, 48944712 - 48944599
Alignment:
Q  3 atttttactttatctctctatattactttgatatttgtgccaatacatatttttctttgtaaaaatgtggttgtcaatttagttgtcaagcaaattgatg 102  Q
    ||||||||||| |||||||||  ||||||||||||||||||||||||||||||||||||||||||| || ||||  ||||||||||||||||||||||||    
T  48944712 atttttactttctctctctat--tactttgatatttgtgccaatacatatttttctttgtaaaaatatgattgttcatttagttgtcaagcaaattgatg 48944615  T
Q  103 ttcaaataacactact 118  Q
    ||||||||||||||||    
T  48944614 ttcaaataacactact 48944599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 1 - 120
Target Start/End: Original strand, 52100328 - 52100445
Alignment:
Q  1 atatttttactttatctctctatattactttgatatttgtgccaatacatatttttctttgtaaaaatgtggttgtcaatttagttgtcaagcaaattga 100  Q
    ||||||||||||| ||| |||||  ||||||||||||| ||| ||||||||||||||||||||||||| || ||||| ||||| ||||||||||||||||    
T  52100328 atatttttactttctctttctat--tactttgatatttatgctaatacatatttttctttgtaaaaatatgattgtccatttaattgtcaagcaaattga 52100425  T
Q  101 tgttcaaataacactactct 120  Q
    ||||||||||||||||||||    
T  52100426 tgttcaaataacactactct 52100445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 15 - 119
Target Start/End: Original strand, 16479712 - 16479816
Alignment:
Q  15 tctctctatattactttgatatttgtgccaatacatatttttctttgtaaaaatgtggttgtcaatttagttgtcaagcaaattgatgttcaaataacac 114  Q
    ||||||| |||||||||||| || |||||||||||||||||||||||||||||   ||||||| |||| |||||||||||||| ||||||||||||||||    
T  16479712 tctctctctattactttgattttcgtgccaatacatatttttctttgtaaaaacaaggttgtctatttggttgtcaagcaaatagatgttcaaataacac 16479811  T
Q  115 tactc 119  Q
    |||||    
T  16479812 tactc 16479816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 1 - 120
Target Start/End: Original strand, 52485540 - 52485657
Alignment:
Q  1 atatttttactttatctctctatattactttgatatttgtgccaatacatatttttctttgtaaaaatgtggttgtcaatttagttgtcaagcaaattga 100  Q
    |||||||||||||||||||||||  | ||||| | || ||||||||||||| |||||||||||||||| |||||||| |||  |||||||| ||||| ||    
T  52485540 atatttttactttatctctctat--tgctttggttttcgtgccaatacatacttttctttgtaaaaatatggttgtccattaggttgtcaaacaaataga 52485637  T
Q  101 tgttcaaataacactactct 120  Q
    |||||||||||||| |||||    
T  52485638 tgttcaaataacacaactct 52485657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 23 - 116
Target Start/End: Complemental strand, 23868962 - 23868869
Alignment:
Q  23 tattactttgatatttgtgccaatacatatttttctttgtaaaaatgtggttgtcaatttagttgtcaagcaaattgatgttcaaataacacta 116  Q
    ||||| |||||| ||||||||||||||| |||||| |||||||||| || ||||| |||| |||||||||||||| ||||||||||||||||||    
T  23868962 tattattttgatttttgtgccaatacatttttttccttgtaaaaatatgattgtctatttggttgtcaagcaaatagatgttcaaataacacta 23868869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 1 - 121
Target Start/End: Original strand, 33796334 - 33796452
Alignment:
Q  1 atatttttactttatctctctatattactttgatatttgtgccaatacatatttttctttgtaaaaatgtggttgtcaatttagttgtcaagcaaattga 100  Q
    ||||||||||||| |||| ||||  ||||||||| |||||||||| ||||| |||||||| ||||||| ||||||||||| |  ||||||| ||||||||    
T  33796334 atatttttactttttctccctat--tactttgatttttgtgccaacacatacttttctttataaaaatatggttgtcaatgtgattgtcaaccaaattga 33796431  T
Q  101 tgttcaaataacactactcta 121  Q
    | ||||||||||| |||||||    
T  33796432 ttttcaaataacattactcta 33796452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 1 - 121
Target Start/End: Complemental strand, 54099360 - 54099242
Alignment:
Q  1 atatttttactttatctctctatattactttgatatttgtgccaatacatatttttctttgtaaaaatgtggttgtcaatttagttgtcaagcaaattga 100  Q
    ||||||||||||| |||||||||  | ||||||| ||| |||||| | ||| |||||||||||||||| || |||||||| || ||||||| ||||||||    
T  54099360 atatttttactttctctctctat--tgctttgatttttatgccaacatatacttttctttgtaaaaatatgattgtcaatgtaattgtcaaccaaattga 54099263  T
Q  101 tgttcaaataacactactcta 121  Q
    ||||||||||||| |||||||    
T  54099262 tgttcaaataacattactcta 54099242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 1 - 120
Target Start/End: Complemental strand, 45186555 - 45186438
Alignment:
Q  1 atatttttactttatctctctatattactttgatatttgtgccaatacatatttttctttgtaaaaatgtggttgtcaatttagttgtcaagcaaattga 100  Q
    ||||||||||||| |||||||||  ||||||||| ||  || ||||||||| ||||| |||||||| | |||||||| |||| |||||||| ||||||||    
T  45186555 atatttttactttctctctctat--tactttgattttcttgtcaatacatacttttcgttgtaaaagtatggttgtccatttggttgtcaaacaaattga 45186458  T
Q  101 tgttcaaataacactactct 120  Q
    ||||| ||||||||||||||    
T  45186457 tgttcgaataacactactct 45186438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 1 - 86
Target Start/End: Complemental strand, 45657773 - 45657690
Alignment:
Q  1 atatttttactttatctctctatattactttgatatttgtgccaatacatatttttctttgtaaaaatgtggttgtcaatttagtt 86  Q
    ||||||||||||| |||||||||  |||||||||||||||||||||||||| |||||||| || ||||||| ||||||||||||||    
T  45657773 atatttttactttttctctctat--tactttgatatttgtgccaatacatacttttctttatataaatgtgattgtcaatttagtt 45657690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 15 - 113
Target Start/End: Complemental strand, 36756042 - 36755944
Alignment:
Q  15 tctctctatattactttgatatttgtgccaatacatatttttctttgtaaaaatgtggttgtcaatttagttgtcaagcaaattgatgttcaaataaca 113  Q
    ||||||| |||| ||||||| |||||||||| | ||| |||||||||||||||| ||||||||||| |  ||||||| ||||||||| |||||||||||    
T  36756042 tctctctctattgctttgatttttgtgccaacatatacttttctttgtaaaaatatggttgtcaatgtgattgtcaatcaaattgatattcaaataaca 36755944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 15 - 113
Target Start/End: Original strand, 51698938 - 51699036
Alignment:
Q  15 tctctctatattactttgatatttgtgccaatacatatttttctttgtaaaaatgtggttgtcaatttagttgtcaagcaaattgatgttcaaataaca 113  Q
    ||||||| ||||  |||| | |||||||||| ||||| |||||||||||| ||| ||||||||||| | |||||||| |||||||||||||||||||||    
T  51698938 tctctctctattgatttggtttttgtgccaacacatacttttctttgtaagaatatggttgtcaatgtggttgtcaaccaaattgatgttcaaataaca 51699036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 36 - 113
Target Start/End: Original strand, 1436917 - 1436994
Alignment:
Q  36 tttgtgccaatacatatttttctttgtaaaaatgtggttgtcaatttagttgtcaagcaaattgatgttcaaataaca 113  Q
    |||||||||| ||||| |||||||||||||||| ||||||||||| | ||||| || |||||||||||||||||||||    
T  1436917 tttgtgccaacacatacttttctttgtaaaaatatggttgtcaatgtggttgtaaaccaaattgatgttcaaataaca 1436994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 15 - 121
Target Start/End: Original strand, 26772448 - 26772555
Alignment:
Q  15 tctctctatattactttgatatttgtgccaatacatatttttcttt-gtaaaaatgtggttgtcaatttagttgtcaagcaaattgatgttcaaataaca 113  Q
    ||||||| ||||| |||||| || ||| ||||||||| |||||||| ||||||||  ||||||| |||| | |||||| ||||| |||||||||||||||    
T  26772448 tctctctctattattttgattttcgtgtcaatacatagttttcttttgtaaaaataaggttgtctatttggatgtcaaacaaatagatgttcaaataaca 26772547  T
Q  114 ctactcta 121  Q
    ||||||||    
T  26772548 ctactcta 26772555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 15 - 121
Target Start/End: Original strand, 34592144 - 34592250
Alignment:
Q  15 tctctctatattactttgatatttgtgccaatacatatttttctttgtaaaaatgtggttgtcaatttagttgtcaagcaaattgatgttcaaataacac 114  Q
    ||||||| |||||||||||| || ||| ||||||||| |||||||||||||||    |||||| ||||   |||||| ||||| ||||||||||||||||    
T  34592144 tctctctttattactttgattttcgtgtcaatacatacttttctttgtaaaaacaatgttgtctatttgactgtcaaacaaatagatgttcaaataacac 34592243  T
Q  115 tactcta 121  Q
    |||||||    
T  34592244 tactcta 34592250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 79
Target Start/End: Original strand, 52714801 - 52714877
Alignment:
Q  1 atatttttactttatctctctatattactttgatatttgtgccaatacatatttttctttgtaaaaatgtggttgtcaa 79  Q
    ||||||||||||| |||||||||  | ||||||| |||||||||| ||||| |||||||||||||||| ||||||||||    
T  52714801 atatttttactttctctctctat--tgctttgatttttgtgccaacacatacttttctttgtaaaaatatggttgtcaa 52714877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 15 - 104
Target Start/End: Original strand, 26550317 - 26550406
Alignment:
Q  15 tctctctatattactttgatatttgtgccaatacatatttttctttgtaaaaatgtggttgtcaatttagttgtcaagcaaattgatgtt 104  Q
    ||||||| ||||||||| || ||||||| | |||| | ||||||||||||||||||| ||||| |||| |||||||  ||||||||||||    
T  26550317 tctctctctattactttaatttttgtgctagtacacacttttctttgtaaaaatgtgattgtccatttggttgtcacacaaattgatgtt 26550406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 15 - 111
Target Start/End: Original strand, 36907120 - 36907216
Alignment:
Q  15 tctctctatattactttgatatttgtgccaatacatatttttctttgtaaaaatgtggttgtcaatttagttgtcaagcaaattgatgttcaaataa 111  Q
    ||||||| |||||||||| | || |||| ||||||||| ||||||||||||||| |||||||| |||  ||||  || ||||| |||||||||||||    
T  36907120 tctctctctattactttgtttttcgtgcaaatacatatatttctttgtaaaaatatggttgtccattaggttgctaaacaaatagatgttcaaataa 36907216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 23 - 120
Target Start/End: Complemental strand, 35377065 - 35376968
Alignment:
Q  23 tattactttgatatttgtgccaatacatatttttctttgtaaaaatgtggttgtcaatttagttgtcaagcaaattgatgttcaaataacactactct 120  Q
    |||| ||||||| |||||||||||||||  |||||||||||||| | |||||||||    ||||||||   |||| |||||||||||||||| |||||    
T  35377065 tattgctttgatttttgtgccaatacatcattttctttgtaaaattttggttgtcacaaaagttgtcatctaaatggatgttcaaataacacaactct 35376968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 15 - 68
Target Start/End: Original strand, 48287751 - 48287804
Alignment:
Q  15 tctctctatattactttgatatttgtgccaatacatatttttctttgtaaaaat 68  Q
    ||||||| |||||||||||| || |||| |||||||||||||||||||||||||    
T  48287751 tctctctctattactttgattttcgtgctaatacatatttttctttgtaaaaat 48287804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 120
Target Start/End: Original strand, 29780965 - 29781082
Alignment:
Q  1 atatttttactttatctctctatattactttgatatttgtgccaatacatatttttctttgtaaaaatgtggttgtcaatttagttgtcaagcaaattga 100  Q
    ||||||||||||| | |||||||  |  |||||| || ||||||||||| | |||||||| ||||||| || ||||| || |  ||||||| ||||||||    
T  29780965 atatttttactttttttctctattgt--tttgattttcgtgccaatacaaacttttctttataaaaatatgattgtccatatgattgtcaatcaaattga 29781062  T
Q  101 tgttcaaataacactactct 120  Q
    ||| ||||||||| ||||||    
T  29781063 tgtccaaataacattactct 29781082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 4 - 120
Target Start/End: Original strand, 36121891 - 36122005
Alignment:
Q  4 tttttactttatctctctatattactttgatatttgtgccaata-catatttttctttgtaaaaatgtggttgtcaatttagttgtcaagcaaatt-gat 101  Q
    |||||||||||||||||  |||| || |||| |||||||||||| || |||||||||||| ||||| |||||||||| | ||||||| | |||||| | |    
T  36121891 tttttactttatctctc--tattgctatgatttttgtgccaataccacatttttctttgt-aaaatatggttgtcaaataagttgtc-accaaattggtt 36121986  T
Q  102 gttcaaataacactactct 120  Q
    |||||||||||||| ||||    
T  36121987 gttcaaataacactcctct 36122005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 28 - 79
Target Start/End: Original strand, 49021804 - 49021855
Alignment:
Q  28 ctttgatatttgtgccaatacatatttttctttgtaaaaatgtggttgtcaa 79  Q
    ||||||| |||||||||| ||||| |||||||||||||||| ||||||||||    
T  49021804 ctttgatttttgtgccaacacatacttttctttgtaaaaatatggttgtcaa 49021855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 4 - 65
Target Start/End: Original strand, 21196194 - 21196254
Alignment:
Q  4 tttttactttatctctctatattactttgatatttgtgccaatacata-tttttctttgtaaa 65  Q
    ||||||||||||||||||||  ||||||||| || |||| |||||||| ||||||||||||||    
T  21196194 tttttactttatctctctat--tactttgattttcgtgcaaatacatattttttctttgtaaa 21196254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 17 - 112
Target Start/End: Original strand, 47742364 - 47742459
Alignment:
Q  17 tctctatattactttgatatttgtgccaatacatatttttctttgtaaaaatgtggttgtcaatttagttgtcaagcaaattgatgttcaaataac 112  Q
    ||||| |||| |||| || ||||| |||| ||||| || |||| |||||||| | ||||| ||| | |||||||| ||||||| ||||||||||||    
T  47742364 tctctctattgctttaatttttgttccaacacatacttctcttcgtaaaaatatagttgttaatgtggttgtcaaccaaattgctgttcaaataac 47742459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 79
Target Start/End: Original strand, 48353064 - 48353140
Alignment:
Q  1 atatttttactttatctctctatattactttgatatttgtgccaatacatatttttctttgtaaaaatgtggttgtcaa 79  Q
    ||||||||||||  ||||||| |||| ||||||| ||||| |||| ||||| |||||||| ||||||| || |||||||    
T  48353064 atatttttactt--tctctctctattgctttgatttttgtaccaacacatacttttctttataaaaatatgattgtcaa 48353140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 15 - 65
Target Start/End: Complemental strand, 12762681 - 12762631
Alignment:
Q  15 tctctctatattactttgatatttgtgccaatacatatttttctttgtaaa 65  Q
    ||||||| |||||||||||| |||||| |||||  ||||||||||||||||    
T  12762681 tctctctttattactttgatttttgtgtcaataactatttttctttgtaaa 12762631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 21 - 79
Target Start/End: Complemental strand, 29917013 - 29916955
Alignment:
Q  21 tatattactttgatatttgtgccaatacatatttttctttgtaaaaatgtggttgtcaa 79  Q
    |||||| ||||||| |||||| ||| ||||| ||| |||||||||||| ||||||||||    
T  29917013 tatattgctttgatttttgtgtcaacacatactttcctttgtaaaaatatggttgtcaa 29916955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 21 - 79
Target Start/End: Complemental strand, 29966166 - 29966108
Alignment:
Q  21 tatattactttgatatttgtgccaatacatatttttctttgtaaaaatgtggttgtcaa 79  Q
    |||||| ||||||| |||||| ||| ||||| ||| |||||||||||| ||||||||||    
T  29966166 tatattgctttgatttttgtgtcaacacatactttcctttgtaaaaatatggttgtcaa 29966108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 113
Target Start/End: Complemental strand, 26452726 - 26452616
Alignment:
Q  1 atatttttactttatctctctatattactttgatatttgtgccaatacatatttttctttgtaaaaatgtggttgtcaatttagttgtcaagcaaattga 100  Q
    ||||||||||||| |||||||||  | ||||||| |   || ||||||||  |||||||||||||||  || ||||| || || ||||||| || |||||    
T  26452726 atatttttactttctctctctat--tgctttgatttccctgtcaatacatgattttctttgtaaaaagatgattgtccatataattgtcaatcacattga 26452629  T
Q  101 tgttcaaataaca 113  Q
    | |||||||||||    
T  26452628 tattcaaataaca 26452616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 23 - 68
Target Start/End: Complemental strand, 52963299 - 52963254
Alignment:
Q  23 tattactttgatatttgtgccaatacatatttttctttgtaaaaat 68  Q
    |||||||||  | |||||| ||||||||||||||||||||||||||    
T  52963299 tattactttagtttttgtgtcaatacatatttttctttgtaaaaat 52963254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 36 - 76
Target Start/End: Original strand, 5527444 - 5527484
Alignment:
Q  36 tttgtgccaatacatatttttctttgtaaaaatgtggttgt 76  Q
    |||||| |||||||||| ||||||||||||||| |||||||    
T  5527444 tttgtgtcaatacatatatttctttgtaaaaatatggttgt 5527484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 23 - 79
Target Start/End: Complemental strand, 44962169 - 44962113
Alignment:
Q  23 tattactttgatatttgtgccaatacatatttttctttgtaaaaatgtggttgtcaa 79  Q
    |||||||||||| || ||  |||||||||||||| ||||||||||  ||||||||||    
T  44962169 tattactttgattttcgtatcaatacatatttttttttgtaaaaacatggttgtcaa 44962113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 85 - 117
Target Start/End: Complemental strand, 51771386 - 51771354
Alignment:
Q  85 ttgtcaagcaaattgatgttcaaataacactac 117  Q
    ||||||||||||| |||||||||||||||||||    
T  51771386 ttgtcaagcaaatagatgttcaaataacactac 51771354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 53 - 121
Target Start/End: Complemental strand, 52089888 - 52089820
Alignment:
Q  53 ttttctttgtaaaaatgtggttgtcaatttagttgtcaagcaaattgatgttcaaataacactactcta 121  Q
    ||||||||||||||||    ||||| |||||||||||||   ||| |||||| ||||||||||||||||    
T  52089888 ttttctttgtaaaaataaaattgtctatttagttgtcaaattaatagatgtttaaataacactactcta 52089820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 92; Significance: 2e-44; HSPs: 29)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 1 - 123
Target Start/End: Original strand, 43715942 - 43716062
Alignment:
Q  1 atatttttactttatctctctatattactttgatatttgtgccaatacatatttttctttgtaaaaatgtggttgtcaatttagttgtcaagcaaattga 100  Q
    ||||||||||||| |||||||||  ||||||||||||||| |||||||||| ||||||| ||||||||||||||||| ||||||||||||||||||||||    
T  43715942 atatttttactttctctctctat--tactttgatatttgtaccaatacatacttttcttggtaaaaatgtggttgtccatttagttgtcaagcaaattga 43716039  T
Q  101 tgttcaaataacactactctaga 123  Q
    |||||||||||||||||||||||    
T  43716040 tgttcaaataacactactctaga 43716062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 16 - 120
Target Start/End: Original strand, 33539486 - 33539590
Alignment:
Q  16 ctctctatattactttgatatttgtgccaatacatatttttctttgtaaaaatgtggttgtcaatttagttgtcaagcaaattgatgttcaaataacact 115  Q
    |||||| ||||||||||||||||||||||||||||| ||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  33539486 ctctctctattactttgatatttgtgccaatacatacttttctttgaaaaaatgtggttgtccatttagttgtcaagcaaattgatgttcaaataacact 33539585  T
Q  116 actct 120  Q
    |||||    
T  33539586 actct 33539590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 1 - 119
Target Start/End: Complemental strand, 25830249 - 25830133
Alignment:
Q  1 atatttttactttatctctctatattactttgatatttgtgccaatacatatttttctttgtaaaaatgtggttgtcaatttagttgtcaagcaaattga 100  Q
    ||||||||||||| |||||||||  |||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||| || ||||||||    
T  25830249 atatttttactttctctctctat--tactttgatatttgtgccaatacatacttttctttgtaaaaatgtggttgtccatttagttgttaaacaaattga 25830152  T
Q  101 tgttcaaataacactactc 119  Q
    |||||||||||||||||||    
T  25830151 tgttcaaataacactactc 25830133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 1 - 121
Target Start/End: Complemental strand, 67164 - 67046
Alignment:
Q  1 atatttttactttatctctctatattactttgatatttgtgccaatacatatttttctttgtaaaaatgtggttgtcaatttagttgtcaagcaaattga 100  Q
    ||||||||||||  |||||||||  |||||||||||||||||||||||||  ||||||||||||||||||||||||| |||| ||||||||||||||| |    
T  67164 atatttttacttcttctctctat--tactttgatatttgtgccaatacatgattttctttgtaaaaatgtggttgtctatttggttgtcaagcaaattaa 67067  T
Q  101 tgttcaaataacactactcta 121  Q
    |||||||||||||||||||||    
T  67066 tgttcaaataacactactcta 67046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 15 - 121
Target Start/End: Original strand, 35792118 - 35792224
Alignment:
Q  15 tctctctatattactttgatatttgtgccaatacatatttttctttgtaaaaatgtggttgtcaatttagttgtcaagcaaattgatgttcaaataacac 114  Q
    ||||||| ||||||||||||||||||||||||||||| |||| ||  |||||||||||||||| ||||||||||||||||||||| ||||||||||||||    
T  35792118 tctctctctattactttgatatttgtgccaatacatactttttttgataaaaatgtggttgtccatttagttgtcaagcaaattggtgttcaaataacac 35792217  T
Q  115 tactcta 121  Q
    | |||||    
T  35792218 tcctcta 35792224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 1 - 121
Target Start/End: Original strand, 12655990 - 12656108
Alignment:
Q  1 atatttttactttatctctctatattactttgatatttgtgccaatacatatttttctttgtaaaaatgtggttgtcaatttagttgtcaagcaaattga 100  Q
    ||||||||||||| |||||||||  |||||| || ||||||||||| |||| |||||||||||||||  |||||||| |||| |||||||||||||| ||    
T  12655990 atatttttactttctctctctat--tactttcatttttgtgccaatgcatacttttctttgtaaaaacatggttgtctatttggttgtcaagcaaataga 12656087  T
Q  101 tgttcaaataacactactcta 121  Q
    |||||||||||||||||||||    
T  12656088 tgttcaaataacactactcta 12656108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 1 - 113
Target Start/End: Complemental strand, 41639803 - 41639691
Alignment:
Q  1 atatttttactttatctctctatattactttgatatttgtgccaatacatatttttctttgtaaaaatgtggttgtcaatttagttgtcaagcaaattga 100  Q
    ||||||||||||| ||||||| |||| ||||||| |||||| ||| ||||| |||||||||||||||| ||||||||||  | |||||||| ||||||||    
T  41639803 atatttttactttctctctctctattgctttgatttttgtgtcaacacatacttttctttgtaaaaatatggttgtcaacgtggttgtcaaccaaattga 41639704  T
Q  101 tgttcaaataaca 113  Q
    |||||||||||||    
T  41639703 tgttcaaataaca 41639691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 1 - 113
Target Start/End: Complemental strand, 42786663 - 42786551
Alignment:
Q  1 atatttttactttatctctctatattactttgatatttgtgccaatacatatttttctttgtaaaaatgtggttgtcaatttagttgtcaagcaaattga 100  Q
    ||||||||||||| ||||||| | || ||||||| |||||||||||||||||||||||||||||||   || |||||||||| |||||||| ||| ||||    
T  42786663 atatttttactttttctctctctctttctttgatttttgtgccaatacatatttttctttgtaaaatcatgattgtcaatttggttgtcaaccaagttga 42786564  T
Q  101 tgttcaaataaca 113  Q
    |||||||||||||    
T  42786563 tgttcaaataaca 42786551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 1 - 113
Target Start/End: Original strand, 6440149 - 6440259
Alignment:
Q  1 atatttttactttatctctctatattactttgatatttgtgccaatacatatttttctttgtaaaaatgtggttgtcaatttagttgtcaagcaaattga 100  Q
    |||||||||||||  |||||| | || ||||||| |||||| ||||||||| |||||||||||||||| ||||||||||||| |||||||| ||| ||||    
T  6440149 atatttttacttt--ctctctttcttgctttgatttttgtgtcaatacatacttttctttgtaaaaatatggttgtcaatttggttgtcaaccaagttga 6440246  T
Q  101 tgttcaaataaca 113  Q
    |||||||||||||    
T  6440247 tgttcaaataaca 6440259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 1 - 113
Target Start/End: Original strand, 35067228 - 35067338
Alignment:
Q  1 atatttttactttatctctctatattactttgatatttgtgccaatacatatttttctttgtaaaaatgtggttgtcaatttagttgtcaagcaaattga 100  Q
    ||||||||||||| |||||||||  | ||||| | |||||||||| ||||| |||||||||||||||| ||||||||||| | |||||||| ||||||||    
T  35067228 atatttttactttctctctctat--tgctttggtttttgtgccaacacatacttttctttgtaaaaatatggttgtcaatgtggttgtcaaccaaattga 35067325  T
Q  101 tgttcaaataaca 113  Q
    |||||||||||||    
T  35067326 tgttcaaataaca 35067338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 1 - 113
Target Start/End: Original strand, 5574323 - 5574433
Alignment:
Q  1 atatttttactttatctctctatattactttgatatttgtgccaatacatatttttctttgtaaaaatgtggttgtcaatttagttgtcaagcaaattga 100  Q
    ||||||||||||| | |||||||  || |||||| ||||||  |||||||| |||||||||||||||| ||| ||||||| |||||||||| ||||||||    
T  5574323 atatttttactttctttctctat--tattttgatttttgtgttaatacatacttttctttgtaaaaatatgggtgtcaatatagttgtcaaccaaattga 5574420  T
Q  101 tgttcaaataaca 113  Q
    |||||||||||||    
T  5574421 tgttcaaataaca 5574433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 1 - 118
Target Start/End: Complemental strand, 7814596 - 7814476
Alignment:
Q  1 atatttttactttatctctctatattactttgatatttgtgccaatacatatttttctttgtaaaaatgtggttgtcaatttag-------ttgtcaagc 93  Q
    ||||||||||||| |||||||||  ||||||||||||| || |||| |||| ||||||||||  ||||||||||||||||||||       |||||||||    
T  7814596 atatttttactttctctctctat--tactttgatatttatgtcaatgcatacttttctttgt--aaatgtggttgtcaatttagttgtcatttgtcaagc 7814501  T
Q  94 aaattgatgttcaaataacactact 118  Q
    |||||||||||||||||||||||||    
T  7814500 aaattgatgttcaaataacactact 7814476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 28 - 121
Target Start/End: Complemental strand, 3270859 - 3270766
Alignment:
Q  28 ctttgatatttgtgccaatacatatttttctttgtaaaaatgtggttgtcaatttagttgtcaagcaaattgatgttcaaataacactactcta 121  Q
    ||||||| ||||||||||| |||| |||| ||| ||||| | |||||||||||||||||||||| ||| ||||||||||||||||| |||||||    
T  3270859 ctttgatttttgtgccaatccatacttttgtttataaaattatggttgtcaatttagttgtcaaccaagttgatgttcaaataacattactcta 3270766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 17 - 110
Target Start/End: Complemental strand, 33100460 - 33100367
Alignment:
Q  17 tctctatattactttgatatttgtgccaatacatatttttctttgtaaaaatgtggttgtcaatttagttgtcaagcaaattgatgttcaaata 110  Q
    ||||| |||||||||||| |||||| ||||||||| ||||||||||||||||  ||||||| |||| |||||||| ||||| ||||||||||||    
T  33100460 tctctctattactttgatttttgtgtcaatacatacttttctttgtaaaaataaggttgtctatttggttgtcaaacaaatggatgttcaaata 33100367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 1 - 118
Target Start/End: Complemental strand, 7795308 - 7795188
Alignment:
Q  1 atatttttactttatctctctatattactttgatatttgtgccaatacatatttttctttgtaaaaatgtggttgtcaatttag-------ttgtcaagc 93  Q
    ||||||||||||| ||| |||||  |||||||||||||||| |||| |||| ||||||||||  |||||| |||||||||||||       |||||||||    
T  7795308 atatttttactttctctttctat--tactttgatatttgtgtcaatgcatacttttctttgt--aaatgtagttgtcaatttagttgtcatttgtcaagc 7795213  T
Q  94 aaattgatgttcaaataacactact 118  Q
    ||||||||||||| |||||||||||    
T  7795212 aaattgatgttcatataacactact 7795188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 29 - 113
Target Start/End: Complemental strand, 39453294 - 39453210
Alignment:
Q  29 tttgatatttgtgccaatacatatttttctttgtaaaaatgtggttgtcaatttagttgtcaagcaaattgatgttcaaataaca 113  Q
    |||||| ||| || ||||||||| |||||||||||||||| || |||||||| | |||||||| |||||||||||||||||||||    
T  39453294 tttgatttttctgtcaatacataattttctttgtaaaaatatgattgtcaatgtggttgtcaatcaaattgatgttcaaataaca 39453210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 1 - 90
Target Start/End: Complemental strand, 7777183 - 7777098
Alignment:
Q  1 atatttttactttatctctctatattactttgatatttgtgccaatacatatttttctttgtaaaaatgtggttgtcaatttagttgtca 90  Q
    ||||||||||||| |||||||||  ||||||||||||||||  ||| |||| ||||||||||  ||||||||||||||||||||||||||    
T  7777183 atatttttactttctctctctat--tactttgatatttgtgttaatgcatacttttctttgt--aaatgtggttgtcaatttagttgtca 7777098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 23 - 113
Target Start/End: Complemental strand, 3413176 - 3413086
Alignment:
Q  23 tattactttgatatttgtgccaatacatatttttctttgtaaaaatgtggttgtcaatttagttgtcaagcaaattgatgttcaaataaca 113  Q
    |||| ||||| | |||||||||||||||  |||||||||||||||| ||  ||||||| | |||||||| |||||||||||||||||||||    
T  3413176 tattgctttggtttttgtgccaatacatgattttctttgtaaaaatatgactgtcaatgttgttgtcaaccaaattgatgttcaaataaca 3413086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 1 - 118
Target Start/End: Complemental strand, 8671559 - 8671444
Alignment:
Q  1 atatttttactttatctctctatattactttgatatttgtgccaatacatatttttctttgtaaaaatgtggttgtcaatttagttgtcaagcaaattga 100  Q
    |||||||||||||||||||||||  ||||||||| |||||  ||||| || ||||| ||||||||||| ||| |||| ||||  |||| || ||||| ||    
T  8671559 atatttttactttatctctctat--tactttgatttttgtatcaatatatttttttttttgtaaaaatatggctgtccatttgattgttaaacaaatgga 8671462  T
Q  101 tgttcaaataacactact 118  Q
    ||||||||||||| ||||    
T  8671461 tgttcaaataacattact 8671444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 44 - 121
Target Start/End: Complemental strand, 36969637 - 36969560
Alignment:
Q  44 aatacatatttttctttgtaaaaatgtggttgtcaatttagttgtcaagcaaattgatgttcaaataacactactcta 121  Q
    ||||||||| ||||||||||||||| ||||||||   | ||||||||| ||||| |||||||||||||||| ||||||    
T  36969637 aatacatatatttctttgtaaaaatatggttgtcgcataagttgtcaaacaaatggatgttcaaataacacaactcta 36969560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 1 - 113
Target Start/End: Original strand, 45405599 - 45405709
Alignment:
Q  1 atatttttactttatctctctatattactttgatatttgtgccaatacatatttttctttgtaaaaatgtggttgtcaatttagttgtcaagcaaattga 100  Q
    ||||||||||||| |||||||||  | ||||||| || ||| ||||| ||  |||||||||||||||| | |||||| || | |||||||| || |||||    
T  45405599 atatttttactttctctctctat--tgctttgattttcgtgtcaatatatgattttctttgtaaaaatatagttgtccatgtggttgtcaatcacattga 45405696  T
Q  101 tgttcaaataaca 113  Q
    |||||||||||||    
T  45405697 tgttcaaataaca 45405709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 51 - 119
Target Start/End: Complemental strand, 12339113 - 12339046
Alignment:
Q  51 atttttctttgtaaaaatgtggttgtcaatttagttgtcaagcaaattgatgttcaaataacactactc 119  Q
    |||||||||||||||||| |||||||  ||||||||||||  |||||||||| ||||||||||||||||    
T  12339113 atttttctttgtaaaaatatggttgttcatttagttgtcacacaaattgatg-tcaaataacactactc 12339046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 16 - 80
Target Start/End: Complemental strand, 42619971 - 42619907
Alignment:
Q  16 ctctctatattactttgatatttgtgccaatacatatttttctttgtaaaaatgtggttgtcaat 80  Q
    |||||| |||| ||||||| |||||||||| ||||| |||||||||||||||| |||||||||||    
T  42619971 ctctctctattgctttgatttttgtgccaacacatacttttctttgtaaaaatatggttgtcaat 42619907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 119
Target Start/End: Original strand, 38675671 - 38675787
Alignment:
Q  1 atatttttactttatctctctatattactttgatatttgtgccaatacatatttttctttgtaaaaatgtggttgtcaatttagttgtcaagcaaattga 100  Q
    ||||||||||||| ||||||||| |  ||||| | |||||||||||||||| |||||||| ||||  | |||||||| ||||  || ||||  |||| ||    
T  38675671 atatttttactttctctctctattt--ctttggtttttgtgccaatacatacttttctttttaaagttatggttgtctatttgattatcaaataaataga 38675768  T
Q  101 tgttcaaataacactactc 119  Q
    |||||||||||||| ||||    
T  38675769 tgttcaaataacacaactc 38675787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 15 - 79
Target Start/End: Original strand, 6972234 - 6972298
Alignment:
Q  15 tctctctatattactttgatatttgtgccaatacatatttttctttgtaaaaatgtggttgtcaa 79  Q
    ||||||| |||| ||||| | |||||||||| ||||| |||||||||||||||| ||||||||||    
T  6972234 tctctctctattgctttggtttttgtgccaacacatacttttctttgtaaaaatatggttgtcaa 6972298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 15 - 66
Target Start/End: Original strand, 10902784 - 10902835
Alignment:
Q  15 tctctctatattactttgatatttgtgccaatacatatttttctttgtaaaa 66  Q
    ||||||| |||| ||||||| |||||||||||||||  ||||||||||||||    
T  10902784 tctctctctattgctttgatttttgtgccaatacatcattttctttgtaaaa 10902835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 23 - 112
Target Start/End: Complemental strand, 36612062 - 36611973
Alignment:
Q  23 tattactttgatatttgtgccaatacatatttttctttgtaaaaatgtggttgtcaatttagttgtcaagcaaattgatgttcaaataac 112  Q
    |||||||||||| |||||||||| ||||| |||| |||  |||||| |||||||| |||| ||| |||  ||||  |||||||| |||||    
T  36612062 tattactttgatttttgtgccaacacatacttttatttaaaaaaatatggttgtctatttggttttcacacaaacagatgttcatataac 36611973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 4 - 114
Target Start/End: Complemental strand, 10644803 - 10644694
Alignment:
Q  4 tttttactttatctctctatattactttgatatttgtgccaatacatatttttc-tttgtaaaaatgtggttgtcaatttagttgtcaagcaaattgatg 102  Q
    ||||||||||||||||||||  | |||| || || ||||||| || || ||||| ||||||||  | |||||||||| | ||||||| | ||||| | ||    
T  10644803 tttttactttatctctctat--tgctttaattttcgtgccaaaacctacttttcctttgtaaatttatggttgtcaaataagttgtctatcaaatggttg 10644706  T
Q  103 ttcaaataacac 114  Q
    ||||||||||||    
T  10644705 ttcaaataacac 10644694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 17 - 65
Target Start/End: Complemental strand, 12735001 - 12734953
Alignment:
Q  17 tctctatattactttgatatttgtgccaatacatatttttctttgtaaa 65  Q
    |||||||||||||||||| |||||| |||||| || ||||| |||||||    
T  12735001 tctctatattactttgatttttgtgtcaatacctacttttcattgtaaa 12734953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 89; Significance: 1e-42; HSPs: 28)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 1 - 120
Target Start/End: Original strand, 45420203 - 45420320
Alignment:
Q  1 atatttttactttatctctctatattactttgatatttgtgccaatacatatttttctttgtaaaaatgtggttgtcaatttagttgtcaagcaaattga 100  Q
    ||||||||||||| | |||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||  |||||||    
T  45420203 atatttttactttctttctctat--tactttgatatttgtgccaatacatatttttctttgtaaaaatgtggttgtctatttagttgtcaaataaattga 45420300  T
Q  101 tgttcaaataacactactct 120  Q
    ||||||||||||||||||||    
T  45420301 tgttcaaataacactactct 45420320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 1 - 120
Target Start/End: Complemental strand, 12784402 - 12784283
Alignment:
Q  1 atatttttactttatctctctatattactttgatatttgtgccaatacatatttttctttgtaaaaatgtggttgtcaatttagttgtcaagcaaattga 100  Q
    ||||||||||||| ||||||| |||||||||||| ||| ||||||| ||||||||||||||||||||  |||||||| ||||||||||||||||||| ||    
T  12784402 atatttttactttctctctctctattactttgatttttatgccaatgcatatttttctttgtaaaaacatggttgtctatttagttgtcaagcaaataga 12784303  T
Q  101 tgttcaaataacactactct 120  Q
    ||||||||||||||||||||    
T  12784302 tgttcaaataacactactct 12784283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 15 - 121
Target Start/End: Original strand, 3771451 - 3771557
Alignment:
Q  15 tctctctatattactttgatatttgtgccaatacatatttttctttgtaaaaatgtggttgtcaatttagttgtcaagcaaattgatgttcaaataacac 114  Q
    ||||||| ||||||||||||||||||| |||||| || ||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||    
T  3771451 tctctctctattactttgatatttgtgtcaatacgtacttttctttgtaaaaatgtggttgtccatttagttgtcaagcaaattgacgttcaaataacac 3771550  T
Q  115 tactcta 121  Q
    |||||||    
T  3771551 tactcta 3771557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 1 - 116
Target Start/End: Original strand, 4657369 - 4657482
Alignment:
Q  1 atatttttactttatctctctatattactttgatatttgtgccaatacatatttttctttgtaaaaatgtggttgtcaatttagttgtcaagcaaattga 100  Q
    ||||||||||||| |||||||||  ||||||||||||| |||||||||| | ||||||||||||||||||| ||||| |||| |||||||||||||||||    
T  4657369 atatttttactttctctctctat--tactttgatatttatgccaatacacaattttctttgtaaaaatgtgattgtccatttggttgtcaagcaaattga 4657466  T
Q  101 tgttcaaataacacta 116  Q
    ||||||||||| ||||    
T  4657467 tgttcaaataatacta 4657482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 4 - 120
Target Start/End: Complemental strand, 17999678 - 17999564
Alignment:
Q  4 tttttactttatctctctatattactttgatatttgtgccaatacatatttttctttgtaaaaatgtggttgtcaatttagttgtcaagcaaattgatgt 103  Q
    |||||| |||||||||||||  ||||||||| || |||||||||||||||||||||||||||||   ||||||| ||||||||||||| ||||| |||||    
T  17999678 tttttattttatctctctat--tactttgattttcgtgccaatacatatttttctttgtaaaaacaaggttgtctatttagttgtcaaacaaatagatgt 17999581  T
Q  104 tcaaataacactactct 120  Q
    |||||||||||||||||    
T  17999580 tcaaataacactactct 17999564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 23 - 119
Target Start/End: Original strand, 1040601 - 1040697
Alignment:
Q  23 tattactttgatatttgtgccaatacatatttttctttgtaaaaatgtggttgtcaatttagttgtcaagcaaattgatgttcaaataacactactc 119  Q
    |||||||||||| |||||||||||||||| ||||||||||||||| ||| ||||| ||||  ||||||||||||| |||||||||||||||||||||    
T  1040601 tattactttgatttttgtgccaatacatacttttctttgtaaaaacgtgattgtctatttgattgtcaagcaaatagatgttcaaataacactactc 1040697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 1 - 113
Target Start/End: Complemental strand, 42532742 - 42532632
Alignment:
Q  1 atatttttactttatctctctatattactttgatatttgtgccaatacatatttttctttgtaaaaatgtggttgtcaatttagttgtcaagcaaattga 100  Q
    |||||||||||||||||||||||  ||||||||| || |||||||||||||||||||||| ||||||  | || ||| |||| |||||||||||||| ||    
T  42532742 atatttttactttatctctctat--tactttgattttcgtgccaatacatatttttctttataaaaacatagtagtctatttggttgtcaagcaaataga 42532645  T
Q  101 tgttcaaataaca 113  Q
    |||||||||||||    
T  42532644 tgttcaaataaca 42532632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 1 - 120
Target Start/End: Original strand, 29449279 - 29449395
Alignment:
Q  1 atatttttactttatctctctatattactttgatatttgtgccaatacatatttttctttgtaaaaatgtggttgtcaatttagttgtcaagcaaattga 100  Q
    ||||||||||||| |||||||||  ||||||||| ||||||| ||| |||| |||||||||||||||  || ||||| |||| |||||||||||||| ||    
T  29449279 atatttttactttctctctctat--tactttgatttttgtgcaaatgcatacttttctttgtaaaaacatg-ttgtctatttggttgtcaagcaaataga 29449375  T
Q  101 tgttcaaataacactactct 120  Q
    ||||||||||||||||||||    
T  29449376 tgttcaaataacactactct 29449395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 1 - 120
Target Start/End: Original strand, 40700263 - 40700380
Alignment:
Q  1 atatttttactttatctctctatattactttgatatttgtgccaatacatatttttctttgtaaaaatgtggttgtcaatttagttgtcaagcaaattga 100  Q
    |||||||||||||||||||||||  ||||||||| || ||| ||||| |||||||| ||| ||||||  || ||||| |||| |||||||||||||| ||    
T  40700263 atatttttactttatctctctat--tactttgattttcgtgtcaatatatatttttttttataaaaacatgattgtctatttggttgtcaagcaaataga 40700360  T
Q  101 tgttcaaataacactactct 120  Q
    ||||||||||||||||||||    
T  40700361 tgttcaaataacactactct 40700380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 1 - 113
Target Start/End: Complemental strand, 7084718 - 7084608
Alignment:
Q  1 atatttttactttatctctctatattactttgatatttgtgccaatacatatttttctttgtaaaaatgtggttgtcaatttagttgtcaagcaaattga 100  Q
    ||||||||||||| ||| |||||  | ||||||| ||||| |||| ||||| |||||||||||||||| || |||||||| | |||||||| ||||||||    
T  7084718 atatttttactttctctttctat--tgctttgatttttgtaccaacacatacttttctttgtaaaaatatgattgtcaatgtggttgtcaaccaaattga 7084621  T
Q  101 tgttcaaataaca 113  Q
    |||||||||||||    
T  7084620 tgttcaaataaca 7084608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 36 - 113
Target Start/End: Complemental strand, 21738588 - 21738511
Alignment:
Q  36 tttgtgccaatacatatttttctttgtaaaaatgtggttgtcaatttagttgtcaagcaaattgatgttcaaataaca 113  Q
    |||||||||| |||||||||||||||||||||| || |||||||| | |||||||| |||||||||||||||||||||    
T  21738588 tttgtgccaacacatatttttctttgtaaaaatatgattgtcaatgtcgttgtcaaccaaattgatgttcaaataaca 21738511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 15 - 113
Target Start/End: Original strand, 19843564 - 19843662
Alignment:
Q  15 tctctctatattactttgatatttgtgccaatacatatttttctttgtaaaaatgtggttgtcaatttagttgtcaagcaaattgatgttcaaataaca 113  Q
    ||||||| |||| ||||||| |||||||||| ||||| |||||||||||||||| |  |||||||| |  ||||||| |||||||||||||||||||||    
T  19843564 tctctctctattgctttgatttttgtgccaacacatacttttctttgtaaaaatataattgtcaatatgattgtcaaccaaattgatgttcaaataaca 19843662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 25 - 113
Target Start/End: Complemental strand, 26290832 - 26290744
Alignment:
Q  25 ttactttgatatttgtgccaatacatatttttctttgtaaaaatgtggttgtcaatttagttgtcaagcaaattgatgttcaaataaca 113  Q
    |||||||| | |||||  ||| |||||||||||||||||||||| || |||||||| ||||| |||| |||||||||||||||||||||    
T  26290832 ttactttggtttttgtaacaacacatatttttctttgtaaaaatatgattgtcaatgtagttatcaaccaaattgatgttcaaataaca 26290744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 1 - 79
Target Start/End: Original strand, 33616533 - 33616611
Alignment:
Q  1 atatttttactttatctctctatattactttgatatttgtgccaatacatatttttctttgtaaaaatgtggttgtcaa 79  Q
    ||||||||||||| ||||||| |||| ||||||| ||||| |||| ||||| |||||||||||||||| ||||||||||    
T  33616533 atatttttactttctctctctctattgctttgatttttgtaccaacacatacttttctttgtaaaaatatggttgtcaa 33616611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 30 - 113
Target Start/End: Complemental strand, 43658688 - 43658605
Alignment:
Q  30 ttgatatttgtgccaatacatatttttctttgtaaaaatgtggttgtcaatttagttgtcaagcaaattgatgttcaaataaca 113  Q
    ||||| ||||||| |||||||| |||||||||||||||  | ||||||||| | |||||||| |||||| ||||||||||||||    
T  43658688 ttgatttttgtgctaatacatacttttctttgtaaaaaaatagttgtcaatatggttgtcaaccaaattaatgttcaaataaca 43658605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 1 - 113
Target Start/End: Original strand, 12070915 - 12071025
Alignment:
Q  1 atatttttactttatctctctatattactttgatatttgtgccaatacatatttttctttgtaaaaatgtggttgtcaatttagttgtcaagcaaattga 100  Q
    ||||||||||||| ||| |||||  | ||||||| || ||| ||||||||  |||||||||||||||  |||||||| || | |||||||| || |||||    
T  12070915 atatttttactttctctttctat--tgctttgattttcgtgtcaatacatgattttctttgtaaaaagatggttgtccatgtggttgtcaatcacattga 12071012  T
Q  101 tgttcaaataaca 113  Q
    |||||||||||||    
T  12071013 tgttcaaataaca 12071025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 38 - 121
Target Start/End: Original strand, 4319809 - 4319892
Alignment:
Q  38 tgtgccaatacatatttttctttgtaaaaatgtggttgtcaatttagttgtcaagcaaattgatgttcaaataacactactcta 121  Q
    |||| ||||||||| |||||||| ||||||  ||  |||| ||||| |||||||| |||| |||||||||||||||||||||||    
T  4319809 tgtgtcaatacataattttctttataaaaacatgactgtctatttaattgtcaagtaaatagatgttcaaataacactactcta 4319892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 4 - 114
Target Start/End: Original strand, 5031993 - 5032102
Alignment:
Q  4 tttttactttatctctctatattactttgatatttgtgccaatacata-tttttctttgtaaaaatgtggttgtcaatttagttgtcaagcaaattgatg 102  Q
    |||| |||||||||||||||  ||||||||||||||||| || || || ||||||||||||||  | |||||||||| | ||||||| | ||||  | ||    
T  5031993 ttttcactttatctctctat--tactttgatatttgtgctaaaacttactttttctttgtaaatttatggttgtcaaataagttgtctatcaaaaggttg 5032090  T
Q  103 ttcaaataacac 114  Q
    ||||||||||||    
T  5032091 ttcaaataacac 5032102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 1 - 120
Target Start/End: Original strand, 14328449 - 14328566
Alignment:
Q  1 atatttttactttatctctctatattactttgatatttgtgccaatacatatttttctttgtaaaaatgtggttgtcaatttagttgtcaagcaaattga 100  Q
    ||||||||||||| ||||||| |  | ||||||| || ||| ||||||||  ||||||| |||||||| |  ||||| || | |||||||| || | |||    
T  14328449 atatttttactttctctctctgt--tgctttgattttcgtgtcaatacatgattttcttagtaaaaatataattgtccatgtggttgtcaatcacaatga 14328546  T
Q  101 tgttcaaataacactactct 120  Q
    ||||||||||||||| ||||    
T  14328547 tgttcaaataacactgctct 14328566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 1 - 80
Target Start/End: Complemental strand, 18737877 - 18737800
Alignment:
Q  1 atatttttactttatctctctatattactttgatatttgtgccaatacatatttttctttgtaaaaatgtggttgtcaat 80  Q
    |||||||||||||  || ||| ||||  |||||| |||||||||| ||||| |||||||| ||||||| |||||||||||    
T  18737877 atatttttacttt--ctttctttattgttttgatttttgtgccaacacatacttttctttataaaaatatggttgtcaat 18737800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 44 - 120
Target Start/End: Complemental strand, 40358049 - 40357973
Alignment:
Q  44 aatacatatttttctttgtaaaaatgtggttgtcaatttagttgtcaagcaaattgatgttcaaataacactactct 120  Q
    |||||||| |||||||||||||||| || ||||| ||||  |||||||  ||||||||||  |||||| ||||||||    
T  40358049 aatacataattttctttgtaaaaatatgattgtctatttgattgtcaaataaattgatgtgtaaataatactactct 40357973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 1 - 79
Target Start/End: Complemental strand, 40599282 - 40599208
Alignment:
Q  1 atatttttactttatctctctatattactttgatatttgtgccaatacatatttttctttgtaaaaatgtggttgtcaa 79  Q
    |||||||||||||  ||||||||||| ||||| | ||||||||||  ||||||||| ||||||||||| || |||||||    
T  40599282 atatttttacttt--ctctctatattgctttggtttttgtgccaa--catatttttttttgtaaaaatatgattgtcaa 40599208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 36 - 79
Target Start/End: Original strand, 6336351 - 6336394
Alignment:
Q  36 tttgtgccaatacatatttttctttgtaaaaatgtggttgtcaa 79  Q
    |||||||||| ||||| |||||||||||||||| ||||||||||    
T  6336351 tttgtgccaacacatacttttctttgtaaaaatatggttgtcaa 6336394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 16 - 79
Target Start/End: Complemental strand, 45259279 - 45259216
Alignment:
Q  16 ctctctatattactttgatatttgtgccaatacatatttttctttgtaaaaatgtggttgtcaa 79  Q
    |||||| |||| ||||||| ||||| |||| ||||| |||||||||||||||| || |||||||    
T  45259279 ctctctctattgctttgatttttgtaccaacacatacttttctttgtaaaaatatgtttgtcaa 45259216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 15 - 121
Target Start/End: Complemental strand, 27490722 - 27490616
Alignment:
Q  15 tctctctatattactttgatatttgtgccaatacatatttttctttgtaaaaatgtggttgtcaatttagttgtcaagcaaattgatgttcaaataacac 114  Q
    ||||||| |||| ||||||| ||||||  |||||||  |||||||||||||| | || ||||||    ||||||||   |||| ||||||||||||||||    
T  27490722 tctctctctattgctttgatttttgtgttaatacatcattttctttgtaaaattttgattgtcacaaaagttgtcatcaaaatggatgttcaaataacac 27490623  T
Q  115 tactcta 121  Q
     ||||||    
T  27490622 aactcta 27490616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 46 - 91
Target Start/End: Original strand, 18982951 - 18982996
Alignment:
Q  46 tacatatttttctttgtaaaaatgtggttgtcaatttagttgtcaa 91  Q
    |||||| |||||||||||||||| |||||||| |||| ||||||||    
T  18982951 tacatacttttctttgtaaaaatatggttgtccatttggttgtcaa 18982996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 120
Target Start/End: Complemental strand, 36191025 - 36190907
Alignment:
Q  1 atatttttactttatctctctatattactttgatatttgtgccaatacatatttttctttgtaaaaatgtggtt-gtcaatttagttgtcaagcaaattg 99  Q
    |||||||||||||||||||||||  |||||| || ||  |  ||||| ||  |||||||||||||||  ||||| ||  ||||  || |||| ||||| |    
T  36191025 atatttttactttatctctctat--tactttaattttcatatcaatagatgcttttctttgtaaaaacatggtttgtttatttgattatcaaacaaatag 36190928  T
Q  100 atgttcaaataacactactct 120  Q
    |||||||||||||||||||||    
T  36190927 atgttcaaataacactactct 36190907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 44 - 112
Target Start/End: Original strand, 39309518 - 39309586
Alignment:
Q  44 aatacatatttttctttgtaaaaatgtggttgtcaatttagttgtcaagcaaattgatgttcaaataac 112  Q
    |||| ||| |||||||||||||||| || || ||||| |  ||||||| ||||||||| ||||||||||    
T  39309518 aatatatacttttctttgtaaaaatatgattatcaatatgattgtcaaccaaattgattttcaaataac 39309586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0053 (Bit Score: 88; Significance: 5e-42; HSPs: 1)
Name: scaffold0053
Description:

Target: scaffold0053; HSP #1
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 1 - 119
Target Start/End: Original strand, 12565 - 12681
Alignment:
Q  1 atatttttactttatctctctatattactttgatatttgtgccaatacatatttttctttgtaaaaatgtggttgtcaatttagttgtcaagcaaattga 100  Q
    ||||||||||||| |||||||||  |||||||||||||||||||||||||| ||||||| ||||||||||||||||| ||||||||||||||||||||||    
T  12565 atatttttactttctctctctat--tactttgatatttgtgccaatacatacttttcttggtaaaaatgtggttgtccatttagttgtcaagcaaattga 12662  T
Q  101 tgttcaaataacactactc 119  Q
    |||||||||||| ||||||    
T  12663 tgttcaaataactctactc 12681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 88; Significance: 5e-42; HSPs: 27)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 1 - 119
Target Start/End: Original strand, 22098323 - 22098439
Alignment:
Q  1 atatttttactttatctctctatattactttgatatttgtgccaatacatatttttctttgtaaaaatgtggttgtcaatttagttgtcaagcaaattga 100  Q
    ||||||||||||| |||||||||  |||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||| || |||||||||||||    
T  22098323 atatttttactttctctctctat--tactttgatatttgtgccaatacatacttttctttgtaaaaatgtggttgtccatttaattatcaagcaaattga 22098420  T
Q  101 tgttcaaataacactactc 119  Q
    |||||||||||||||||||    
T  22098421 tgttcaaataacactactc 22098439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 432 - 538
Target Start/End: Original strand, 27951239 - 27951345
Alignment:
Q  432 attcaaatatagtatcaaaataattttaaattttatgtacaaaaatatgagttgtgtacattaaaataattaaataaaggacccgtttgcaccctataat 531  Q
    ||||||||||||||||||||||||||||||||||||||| || ||||||||||| ||| ||||||| ||||||||||||||||  |||| ||||||| ||    
T  27951239 attcaaatatagtatcaaaataattttaaattttatgtaaaacaatatgagttgcgtagattaaaagaattaaataaaggacctatttgtaccctatgat 27951338  T
Q  532 tgttttc 538  Q
    |||||||    
T  27951339 tgttttc 27951345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 199 - 281
Target Start/End: Original strand, 27947316 - 27947396
Alignment:
Q  199 atacatgccgtttgtttttgaaattctcgtctttgcattatcatttcatctctcaaccatatatttatttcatctcaaccata 281  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||  |||||||||||||||||||||||||||||||||    
T  27947316 atacatgccgtttgtttttgaaattctcgtcttcgcattatcatttca--tctcaaccatatatttatttcatctcaaccata 27947396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 1 - 122
Target Start/End: Original strand, 16690567 - 16690686
Alignment:
Q  1 atatttttactttatctctctatattactttgatatttgtgccaatacatatttttctttgtaaaaatgtggttgtcaatttagttgtcaagcaaattga 100  Q
    ||||||||||||| | |||||||  | ||||| | |||||||||| ||||| |||||||||||||||| ||||||||||| | |||||||| ||||||||    
T  16690567 atatttttactttctttctctat--tgctttggtttttgtgccaacacatacttttctttgtaaaaatatggttgtcaatgtggttgtcaaccaaattga 16690664  T
Q  101 tgttcaaataacactactctag 122  Q
    | ||||||||||| | ||||||    
T  16690665 tattcaaataacattgctctag 16690686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 17 - 118
Target Start/End: Original strand, 32639125 - 32639226
Alignment:
Q  17 tctctatattactttgatatttgtgccaatacatatttttctttgtaaaaatgtggttgtcaatttagttgtcaagcaaattgatgttcaaataacacta 116  Q
    |||||||||||||||||| || |||| |||||||| ||||||||||||||||  | ||||| ||||  |||||| |||||| ||||||||||||||||||    
T  32639125 tctctatattactttgattttcgtgctaatacatacttttctttgtaaaaataagattgtctatttgattgtcatgcaaatagatgttcaaataacacta 32639224  T
Q  117 ct 118  Q
    ||    
T  32639225 ct 32639226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 15 - 119
Target Start/End: Complemental strand, 38293350 - 38293245
Alignment:
Q  15 tctctctatattactttgatatttgtgccaatacatat--ttttctttgtaaaaatgtggttgtcaatttagttgtcaagcaaattgatgttcaaataac 112  Q
    ||||||| |||||||||||| |||||||||||  ||||  |||||||||||||||  || ||||| |||| |||||||||||||| ||||||||||||||    
T  38293350 tctctctctattactttgat-tttgtgccaatgtatatacttttctttgtaaaaacatgattgtctatttggttgtcaagcaaatagatgttcaaataac 38293252  T
Q  113 actactc 119  Q
    |||||||    
T  38293251 actactc 38293245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 5 - 113
Target Start/End: Original strand, 38493696 - 38493803
Alignment:
Q  5 ttttactttatctctctatattactttgatattt-gtgccaatacatatttttctttgtaaaaatgtggttgtcaatttagttgtcaagcaaattgatgt 103  Q
    |||||||||||||||||||  | ||||||| ||| ||||||| ||||| |||||||||| ||||| ||| ||||||| | |||||||| |||||||||||    
T  38493696 ttttactttatctctctat--tgctttgattttttgtgccaacacatacttttctttgttaaaatatgggtgtcaatgtggttgtcaaccaaattgatgt 38493793  T
Q  104 tcaaataaca 113  Q
    ||||||||||    
T  38493794 tcaaataaca 38493803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 1 - 119
Target Start/End: Original strand, 40829482 - 40829598
Alignment:
Q  1 atatttttactttatctctctatattactttgatatttgtgccaatacatatttttctttgtaaaaatgtggttgtcaatttagttgtcaagcaaattga 100  Q
    |||||||||||||||||||||||  |||||| || || |||| |||||||| |||||||| | ||||| | ||||||||||| |||||||  |||| | |    
T  40829482 atatttttactttatctctctat--tactttaattttcgtgctaatacatacttttctttatgaaaatttagttgtcaatttggttgtcacacaaagtaa 40829579  T
Q  101 tgttcaaataacactactc 119  Q
    ||||||||||||| |||||    
T  40829580 tgttcaaataacattactc 40829598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 15 - 116
Target Start/End: Original strand, 40364648 - 40364749
Alignment:
Q  15 tctctctatattactttgatatttgtgccaatacatatttttctttgtaaaaatgtggttgtcaatttagttgtcaagcaaattgatgttcaaataacac 114  Q
    ||||||| |||||||||||| |||||||| ||  ||| |||||||| ||||||  ||||| || ||||  ||||||||||||| ||||||||||||||||    
T  40364648 tctctctctattactttgatttttgtgccgatgtatacttttctttctaaaaacatggttatctatttgattgtcaagcaaatagatgttcaaataacac 40364747  T
Q  115 ta 116  Q
    ||    
T  40364748 ta 40364749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 17 - 113
Target Start/End: Complemental strand, 9168156 - 9168061
Alignment:
Q  17 tctctatattactttgatatttgtgccaatacatatttttctttgtaaaaatgtggttgtcaatttagttgtcaagcaaattgatgttcaaataaca 113  Q
    ||||| |||| ||||| | |||||||||| ||||| |||||||||||||| | || |||||||| | |||||||| |||||||||||||||||||||    
T  9168156 tctctctattgctttggtttttgtgccaacacatacttttctttgtaaaa-tatgattgtcaatatggttgtcaaccaaattgatgttcaaataaca 9168061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 1 - 113
Target Start/End: Original strand, 884509 - 884619
Alignment:
Q  1 atatttttactttatctctctatattactttgatatttgtgccaatacatatttttctttgtaaaaatgtggttgtcaatttagttgtcaagcaaattga 100  Q
    ||||||||||||| ||| |||||  |  |||||| |||||||||| ||||| ||||| |||||||||| ||||||| ||| |  |||||||  |||||||    
T  884509 atatttttactttctctttctattgt--tttgatttttgtgccaacacatacttttcattgtaaaaatatggttgttaatatgattgtcaactaaattga 884606  T
Q  101 tgttcaaataaca 113  Q
    |||||||||||||    
T  884607 tgttcaaataaca 884619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 364 - 411
Target Start/End: Original strand, 27948235 - 27948282
Alignment:
Q  364 taaaagtgctaattgaagttcttgtgggccgcaaagcgtcaccctact 411  Q
    |||||||||||||| ||| |||||||||||||||||||||||||||||    
T  27948235 taaaagtgctaattaaagctcttgtgggccgcaaagcgtcaccctact 27948282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 43 - 111
Target Start/End: Complemental strand, 14321918 - 14321850
Alignment:
Q  43 caatacatatttttctttgtaaaaatgtggttgtcaatttagttgtcaagcaaattgatgttcaaataa 111  Q
    ||||||||| |||||||||||||| | |||||||| || | ||||||||  ||||||||||||||||||    
T  14321918 caatacataattttctttgtaaaagtatggttgtccatatggttgtcaattaaattgatgttcaaataa 14321850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 53 - 104
Target Start/End: Original strand, 26686996 - 26687047
Alignment:
Q  53 ttttctttgtaaaaatgtggttgtcaatttagttgtcaagcaaattgatgtt 104  Q
    |||||||||||||||| ||||||||||| |||||||||| |||||| |||||    
T  26686996 ttttctttgtaaaaatatggttgtcaatgtagttgtcaatcaaattaatgtt 26687047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 53 - 104
Target Start/End: Original strand, 26956727 - 26956778
Alignment:
Q  53 ttttctttgtaaaaatgtggttgtcaatttagttgtcaagcaaattgatgtt 104  Q
    |||||||||||||||| ||||||||||| |||||||||| |||||| |||||    
T  26956727 ttttctttgtaaaaatatggttgtcaatgtagttgtcaatcaaattaatgtt 26956778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 314 - 362
Target Start/End: Original strand, 27948169 - 27948219
Alignment:
Q  314 tatagtgttaattaa--ttttttctatcaatgatctatgaaagacataagc 362  Q
    |||||||||||||||  |||||||||||||| |||||||||||||||||||    
T  27948169 tatagtgttaattaaatttttttctatcaataatctatgaaagacataagc 27948219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 53 - 111
Target Start/End: Original strand, 34940751 - 34940809
Alignment:
Q  53 ttttctttgtaaaaatgtggttgtcaatttagttgtcaagcaaattgatgttcaaataa 111  Q
    |||||||| ||||||| || |||||||| | |||||||| |||||||||||||||||||    
T  34940751 ttttctttataaaaatatgattgtcaatgtggttgtcaaccaaattgatgttcaaataa 34940809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 1 - 120
Target Start/End: Original strand, 4088511 - 4088628
Alignment:
Q  1 atatttttactttatctctctatattactttgatatttgtgccaatacatatttttctttgtaaaaatgtggttgtcaatttagttgtcaagcaaattga 100  Q
    ||||||||||||| | |||||||  | ||||| | || |||| ||||||||  ||||||||||||||| || ||||||  |  ||||||||  |||| ||    
T  4088511 atatttttactttctttctctat--tgctttggttttcgtgctaatacatacatttctttgtaaaaatatgattgtcacataggttgtcaaaaaaataga 4088608  T
Q  101 tgttcaaataacactactct 120  Q
    |||||||||||||| |||||    
T  4088609 tgttcaaataacacaactct 4088628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 4 - 114
Target Start/End: Complemental strand, 6940151 - 6940042
Alignment:
Q  4 tttttactttatctctctatattactttgatatttgtgccaatacatatttttc-tttgtaaaaatgtggttgtcaatttagttgtcaagcaaattgatg 102  Q
    ||||||||||||||||||||  | ||||||| || ||||||| || || ||||| ||||||||  | |||||||||| | ||||||| | ||||| | ||    
T  6940151 tttttactttatctctctat--tgctttgattttcgtgccaaaacctacttttcctttgtaaatttatggttgtcaaataagttgtctatcaaatggttg 6940054  T
Q  103 ttcaaataacac 114  Q
    ||||||||||||    
T  6940053 ttcaaataacac 6940042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 1 - 113
Target Start/End: Original strand, 22529038 - 22529150
Alignment:
Q  1 atatttttactttatctctctatattactttgatatttgtgccaatacatatttttctttgtaaaaatgtggttgtcaatttagttgtca--agcaaatt 98  Q
    ||||||||||||||||||| | |  ||||||||| |||||| ||||| ||| ||||||||||| |||  || ||||  |||||||||| |  |||||||     
T  22529038 atatttttactttatctctttgt--tactttgatttttgtgtcaatagatagttttctttgtagaaacatgattgtttatttagttgtgaagagcaaata 22529135  T
Q  99 gatgttcaaataaca 113  Q
    |||||| ||||||||    
T  22529136 gatgtttaaataaca 22529150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 1 - 68
Target Start/End: Original strand, 41699521 - 41699586
Alignment:
Q  1 atatttttactttatctctctatattactttgatatttgtgccaatacatatttttctttgtaaaaat 68  Q
    ||||||||||||| |||||||||  || |||||| || ||| ||||||||| ||||||||||||||||    
T  41699521 atatttttactttctctctctat--taatttgattttcgtgtcaatacataattttctttgtaaaaat 41699586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 1 - 113
Target Start/End: Complemental strand, 6758794 - 6758683
Alignment:
Q  1 atatttttactttatctctctatattactttgatatttgtgccaatacatatttttctttgtaaaaatg-tggttgtcaatttagttgtcaagcaaattg 99  Q
    ||||||||| |||||||||||||  | ||||| | || ||| ||||||||  ||||||||| |||||   |||||||| || | |||||||| || ||||    
T  6758794 atatttttattttatctctctat--tgctttggttttcgtgtcaatacatgattttctttgaaaaaaaaatggttgtccatgtggttgtcaatcatattg 6758697  T
Q  100 atgttcaaataaca 113  Q
    ||||||||||||||    
T  6758696 atgttcaaataaca 6758683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 27546131 - 27546193
Alignment:
Q  1 atatttttactttatctctctatattactttgatatttgtgccaatacatatttttctttgta 63  Q
    ||||||||||||||| ||||||| || ||||||| ||| || |||||  ||||||||||||||    
T  27546131 atatttttactttatatctctattttgctttgatttttatgtcaatatctatttttctttgta 27546193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 4 - 120
Target Start/End: Complemental strand, 41175707 - 41175593
Alignment:
Q  4 tttttactttatctctctatattactttgatatttgtgccaatacata-tttttctttgtaaaaatgtggttgtcaatttagttgtcaagcaaattgatg 102  Q
    ||||||||||||||||||||  | ||||||| || |||| |||||  | ||||||||||||||  | |||||||||  | ||||||||| ||||| | ||    
T  41175707 tttttactttatctctctat--tgctttgatcttcgtgcaaatacccactttttctttgtaaat-tatggttgtcacataagttgtcaaccaaatggttg 41175611  T
Q  103 ttcaaataacactactct 120  Q
    ||||||||||||| ||||    
T  41175610 ttcaaataacactcctct 41175593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 4 - 115
Target Start/End: Complemental strand, 15953046 - 15952937
Alignment:
Q  4 tttttactttatctctctatattactttgatatttgtgccaatacata-tttttctttgtaaaaatgtggttgtcaatttagttgtcaagcaaattgatg 102  Q
    ||||||||||||||||||||  | ||||||| || |||| |||||  | ||||||||||||||  | |||||||||  | ||||||||| ||||| | ||    
T  15953046 tttttactttatctctctat--tgctttgattttcgtgcaaatacccactttttctttgtaaat-tatggttgtcacataagttgtcaaccaaatggttg 15952950  T
Q  103 ttcaaataacact 115  Q
    |||||||||||||    
T  15952949 ttcaaataacact 15952937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 4 - 114
Target Start/End: Complemental strand, 9939433 - 9939324
Alignment:
Q  4 tttttactttatctctctatattactttgatatttgtgccaatacata-tttttctttgtaaaaatgtggttgtcaatttagttgtcaagcaaattgatg 102  Q
    |||||||||||||||||  |||| ||||||| || ||||||| || || |||| |||||||||  | |||||||||| | | ||||| | ||||| | ||    
T  9939433 tttttactttatctctc--tattgctttgattttcgtgccaaaacctacttttcctttgtaaatttatggttgtcaaataaattgtctatcaaatggttg 9939336  T
Q  103 ttcaaataacac 114  Q
    ||||||||||||    
T  9939335 ttcaaataacac 9939324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 4 - 114
Target Start/End: Original strand, 18695388 - 18695497
Alignment:
Q  4 tttttactttatctctctatattactttgatatttgtgccaatacatatttttc-tttgtaaaaatgtggttgtcaatttagttgtcaagcaaattgatg 102  Q
    ||||||||||||||||||||  | ||||||| || |||| || || || ||||| ||||||||  | |||||||||| | ||||||| | ||||| | ||    
T  18695388 tttttactttatctctctat--tgctttgattttcgtgctaaaacctacttttcctttgtaaatttatggttgtcaaataagttgtctatcaaatggttg 18695485  T
Q  103 ttcaaataacac 114  Q
    ||||||||||||    
T  18695486 ttcaaataacac 18695497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 70; Significance: 3e-31; HSPs: 22)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 1 - 113
Target Start/End: Complemental strand, 35822978 - 35822868
Alignment:
Q  1 atatttttactttatctctctatattactttgatatttgtgccaatacatatttttctttgtaaaaatgtggttgtcaatttagttgtcaagcaaattga 100  Q
    ||||||||||||| |||||||||  | ||||||| ||||||||||||||||||||||||||||||||| ||||||||||  | |||||||| ||||||||    
T  35822978 atatttttactttctctctctat--tgctttgatttttgtgccaatacatatttttctttgtaaaaatatggttgtcaacgtggttgtcaaccaaattga 35822881  T
Q  101 tgttcaaataaca 113  Q
    |||||||||||||    
T  35822880 tgttcaaataaca 35822868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 23 - 110
Target Start/End: Complemental strand, 44496786 - 44496699
Alignment:
Q  23 tattactttgatatttgtgccaatacatatttttctttgtaaaaatgtggttgtcaatttagttgtcaagcaaattgatgttcaaata 110  Q
    ||||| ||||||||||||||||||||||| |||||||||||||||| |||||||| ||||| ||||||| ||||||||||||||||||    
T  44496786 tattattttgatatttgtgccaatacataattttctttgtaaaaatatggttgtccatttaattgtcaaacaaattgatgttcaaata 44496699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 15 - 119
Target Start/End: Original strand, 31398204 - 31398308
Alignment:
Q  15 tctctctatattactttgatatttgtgccaatacatatttttctttgtaaaaatgtggttgtcaatttagttgtcaagcaaattgatgttcaaataacac 114  Q
    ||||||| |||||||||||| || |||||||||||||||||||||||||||||   ||||||| |||| |||||||| |||||  |||||||||||||||    
T  31398204 tctctctctattactttgattttcgtgccaatacatatttttctttgtaaaaacaaggttgtctatttggttgtcaaacaaataaatgttcaaataacac 31398303  T
Q  115 tactc 119  Q
    |||||    
T  31398304 tactc 31398308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 23 - 111
Target Start/End: Complemental strand, 41590503 - 41590415
Alignment:
Q  23 tattactttgatatttgtgccaatacatatttttctttgtaaaaatgtggttgtcaatttagttgtcaagcaaattgatgttcaaataa 111  Q
    |||||||||||| |||||||||||||||||||||| |||||||||  |||||||| |||| |||||||||||||| |||||||||||||    
T  41590503 tattactttgatttttgtgccaatacatatttttccttgtaaaaacatggttgtctatttggttgtcaagcaaatagatgttcaaataa 41590415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 1 - 120
Target Start/End: Original strand, 48145592 - 48145697
Alignment:
Q  1 atatttttactttatctctctatattactttgatatttgtgccaatacatatttttctttgtaaaaatgtggttgtcaatttagttgtcaagcaaattga 100  Q
    ||||||||||||| |||||||||  |||||||||||||||||||||||||| |||||||||||||||| ||||||            |||||||||||||    
T  48145592 atatttttactttctctctctat--tactttgatatttgtgccaatacatacttttctttgtaaaaatatggttg------------tcaagcaaattga 48145677  T
Q  101 tgttcaaataacactactct 120  Q
    ||||||||||||||||||||    
T  48145678 tgttcaaataacactactct 48145697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 1 - 121
Target Start/End: Original strand, 26018108 - 26018226
Alignment:
Q  1 atatttttactttatctctctatattactttgatatttgtgccaatacatatttttctttgtaaaaatgtggttgtcaatttagttgtcaagcaaattga 100  Q
    ||||||||||||| |||||||||  |||||| || ||| | | |||||||| |||||||| ||||||| || ||||| ||||| ||||||||||||| ||    
T  26018108 atatttttactttctctctctat--tactttaatttttatacaaatacatacttttctttataaaaatatgattgtctatttaattgtcaagcaaataga 26018205  T
Q  101 tgttcaaataacactactcta 121  Q
     |||||||||| |||||||||    
T  26018206 cgttcaaataaaactactcta 26018226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 1 - 79
Target Start/End: Complemental strand, 42598211 - 42598135
Alignment:
Q  1 atatttttactttatctctctatattactttgatatttgtgccaatacatatttttctttgtaaaaatgtggttgtcaa 79  Q
    |||||| |||||| |||||||||  ||||| |||||||||||||||||||| |||||||| ||||||||||||||||||    
T  42598211 atatttatactttttctctctat--tacttagatatttgtgccaatacataattttctttataaaaatgtggttgtcaa 42598135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 23 - 115
Target Start/End: Complemental strand, 41590066 - 41589977
Alignment:
Q  23 tattactttgatatttgtgccaatacatatttttctttgtaaaaatgtggttgtcaatttagttgtcaagcaaattgatgttcaaataacact 115  Q
    |||||||||||| |||||||||||||||||||||| || ||||||| || ||||| |||| |||||||| |||||  ||||||||||||||||    
T  41590066 tattactttgatttttgtgccaatacatatttttccttataaaaatatgattgtctattt-gttgtcaaacaaat--atgttcaaataacact 41589977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 79
Target Start/End: Complemental strand, 40854658 - 40854582
Alignment:
Q  1 atatttttactttatctctctatattactttgatatttgtgccaatacatatttttctttgtaaaaatgtggttgtcaa 79  Q
    ||||||||||||| |||||||||  | ||||||| |||||||||| ||||| |||||||||||||||| ||||||||||    
T  40854658 atatttttactttctctctctat--tgctttgatttttgtgccaacacatacttttctttgtaaaaatatggttgtcaa 40854582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 1 - 113
Target Start/End: Complemental strand, 36352588 - 36352477
Alignment:
Q  1 atatttttactttatctctctatattactttgatatttgtgccaatacatatttttctttgtaaaaatgtggttgtcaatttag-ttgtcaagcaaattg 99  Q
    ||||||||||||||||||||  |||| ||||||| || ||| ||||| ||  |||||||||||||||  |||||||| || ||| ||||||| || ||||    
T  36352588 atatttttactttatctctc--tattgctttgattttcgtgtcaatatatgattttctttgtaaaaagatggttgtccatgtagtttgtcaatcacattg 36352491  T
Q  100 atgttcaaataaca 113  Q
    ||||||||||||||    
T  36352490 atgttcaaataaca 36352477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 1 - 113
Target Start/End: Complemental strand, 41430155 - 41430045
Alignment:
Q  1 atatttttactttatctctctatattactttgatatttgtgccaatacatatttttctttgtaaaaatgtggttgtcaatttagttgtcaagcaaattga 100  Q
    |||||||||||||||||||||||  | ||||| | || ||| ||||| ||  |||||||||||||||  |||||||| || | |||||||| || |||||    
T  41430155 atatttttactttatctctctat--tgctttggttttcgtgtcaatatatgattttctttgtaaaaagatggttgtccatgtggttgtcaatcacattga 41430058  T
Q  101 tgttcaaataaca 113  Q
    |||||||||||||    
T  41430057 tgttcaaataaca 41430045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 1 - 113
Target Start/End: Original strand, 42584870 - 42584980
Alignment:
Q  1 atatttttactttatctctctatattactttgatatttgtgccaatacatatttttctttgtaaaaatgtggttgtcaatttagttgtcaagcaaattga 100  Q
    |||||||||||||||||||||||  | |||||||  | ||| ||||| ||  |||||||||||||||  |||||||| || | |||||||| || |||||    
T  42584870 atatttttactttatctctctat--tgctttgattctcgtgtcaatagatgattttctttgtaaaaagatggttgtccatgtggttgtcaatcacattga 42584967  T
Q  101 tgttcaaataaca 113  Q
    |||||||||||||    
T  42584968 tgttcaaataaca 42584980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 17 - 110
Target Start/End: Complemental strand, 44651220 - 44651126
Alignment:
Q  17 tctctatattactttgatatttgtgccaatacata-tttttctttgtaaaaatgtggttgtcaatttagttgtcaagcaaattgatgttcaaata 110  Q
    ||||| ||||||||| || ||||| ||||  |||| ||||| ||||||||||| | ||| ||||| ||||||||||  |||||||||||||||||    
T  44651220 tctctctattactttaatttttgtaccaacgcatactttttttttgtaaaaatatagttatcaatatagttgtcaatgaaattgatgttcaaata 44651126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 121
Target Start/End: Complemental strand, 46260095 - 46259979
Alignment:
Q  1 atatttttactttatctctctatattactttgatatttgtgccaatacatatttttctttgtaaaaatgtggttgtcaatttagttgtcaagcaaattga 100  Q
    ||||||||||||| ||| |||||  ||||||| | || || ||||||||||||||||||||||||||  ||||| || ||||  || ||||||  || ||    
T  46260095 atatttttactttctctttctat--tactttggttttcgtaccaatacatatttttctttgtaaaaacatggttatctatttgattctcaagc--ataga 46260000  T
Q  101 tgttcaaataacactactcta 121  Q
    | || ||||||||||||||||    
T  46259999 tcttgaaataacactactcta 46259979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 1 - 113
Target Start/End: Complemental strand, 34507209 - 34507099
Alignment:
Q  1 atatttttactttatctctctatattactttgatatttgtgccaatacatatttttctttgtaaaaatgtggttgtcaatttagttgtcaagcaaattga 100  Q
    ||||||||||||| |||||||||  | ||||||| || ||| ||||||||  |||| ||| ||||||  | |||||| || | |||||||| || |||||    
T  34507209 atatttttactttctctctctat--tgctttgattttcgtgtcaatacatgattttttttataaaaagatagttgtccatgtggttgtcaatcacattga 34507112  T
Q  101 tgttcaaataaca 113  Q
    |||||||||||||    
T  34507111 tgttcaaataaca 34507099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 4 - 109
Target Start/End: Original strand, 46829549 - 46829653
Alignment:
Q  4 tttttactttatctctctatattactttgatatttgtgccaatacata-tttttctttgtaaaaatgtggttgtcaatttagttgtcaagcaaattgatg 102  Q
    ||||||||||||||||||||  | ||||||| || ||||||| || || ||||||||||||||  | |||||||||| | ||||||| | ||||| | ||    
T  46829549 tttttactttatctctctat--tgctttgattttcgtgccaaaacctactttttctttgtaaatttatggttgtcaaataagttgtctatcaaatggttg 46829646  T
Q  103 ttcaaat 109  Q
    |||||||    
T  46829647 ttcaaat 46829653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 18111615 - 18111540
Alignment:
Q  1 atatttttactttatctctctatattactttgatatttgtgccaatacata-tttttctttgtaaaaatgtggttgtc 77  Q
    ||||||||||||||||||||  |||||||||||| ||  ||||||| | || |||||||||||||| || ||||||||    
T  18111615 atatttttactttatctctc--tattactttgattttcttgccaatgcctattttttctttgtaaatatatggttgtc 18111540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 5 - 91
Target Start/End: Complemental strand, 19562348 - 19562262
Alignment:
Q  5 ttttactttatctctctatattactttgatatttgtgccaatacatatttttctttgtaaaaatgtggttgtcaatttagttgtcaa 91  Q
    ||||||||| ||||| | |||||||||||  || |||  |||||||| |||||||||||||||| ||||| ||  || |||||||||    
T  19562348 ttttactttctctctatctattactttgactttcgtgtaaatacatacttttctttgtaaaaatatggttatccgttaagttgtcaa 19562262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 4 - 115
Target Start/End: Original strand, 3062400 - 3062509
Alignment:
Q  4 tttttactttatctctctatattactttgatatttgtgccaatacatattttt-ctttgtaaaaatgtggttgtcaatttagttgtcaagcaaattgatg 102  Q
    ||||||||||||||||||||  |  |||| | ||||||| ||||| ||||||| |||||||||  | |||||||||  | ||||||||| ||||| | ||    
T  3062400 tttttactttatctctctattgt--tttggtttttgtgcaaatacctattttttctttgtaaat-tatggttgtcatgtaagttgtcaaccaaatggttg 3062496  T
Q  103 ttcaaataacact 115  Q
    |||||||||||||    
T  3062497 ttcaaataacact 3062509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 2 - 121
Target Start/End: Original strand, 7817704 - 7817821
Alignment:
Q  2 tatttttactttatctctctatattactttgatatttgtgccaatacata-tttttctttgtaaaaatgtggttgtcaatttagttgtcaagcaaattga 100  Q
    ||||||||||||||||||||||  | ||||||| || |||| ||||   | ||||||||||||||  | |||||||||  | ||||||||| ||||| |     
T  7817704 tatttttactttatctctctat--tgctttgattttcgtgcaaatatccactttttctttgtaaat-tatggttgtcacataagttgtcaaccaaatggt 7817800  T
Q  101 tgttcaaataacactactcta 121  Q
    ||||||||||||||| |||||    
T  7817801 tgttcaaataacactcctcta 7817821  T

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Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 4 - 114
Target Start/End: Complemental strand, 1471292 - 1471183
Alignment:
Q  4 tttttactttatctctctatattactttgatatttgtgccaatacatattt-ttctttgtaaaaatgtggttgtcaatttagttgtcaagcaaattgatg 102  Q
    ||||||||||||||||||||  | ||||||| || ||||||| |  || || |||||||||||  | |||||||||| | ||||||| | ||||| | ||    
T  1471292 tttttactttatctctctat--tgctttgattttcgtgccaaaatctacttcttctttgtaaatttatggttgtcaaataagttgtctatcaaatagttg 1471195  T
Q  103 ttcaaataacac 114  Q
    ||||||||||||    
T  1471194 ttcaaataacac 1471183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 29 - 81
Target Start/End: Complemental strand, 47012547 - 47012495
Alignment:
Q  29 tttgatatttgtgccaatacatatttttctttgtaaaaatgtggttgtcaatt 81  Q
    |||||| ||||| |||| | ||| |||||||||||||||| ||||||||||||    
T  47012547 tttgatttttgtaccaacatatacttttctttgtaaaaatatggttgtcaatt 47012495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0687 (Bit Score: 57; Significance: 2e-23; HSPs: 1)
Name: scaffold0687
Description:

Target: scaffold0687; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 1 - 118
Target Start/End: Original strand, 7127 - 7247
Alignment:
Q  1 atatttttactttatctctctatattactttgatatttgtgccaatacatatttttctttgtaaaaatgtggttgtcaatttag-------ttgtcaagc 93  Q
    ||||||||||||| |||||||||  ||||||||||||| || |||| |||| ||||||||||  ||||||||||||||||||||       |||||||||    
T  7127 atatttttactttctctctctat--tactttgatatttatgtcaatgcatacttttctttgt--aaatgtggttgtcaatttagttgtcatttgtcaagc 7222  T
Q  94 aaattgatgttcaaataacactact 118  Q
    |||||||||||||||||||||||||    
T  7223 aaattgatgttcaaataacactact 7247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0662 (Bit Score: 49; Significance: 1e-18; HSPs: 1)
Name: scaffold0662
Description:

Target: scaffold0662; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 17 - 113
Target Start/End: Original strand, 1226 - 1322
Alignment:
Q  17 tctctatattactttgatatttgtgccaatacatatttttctttgtaaaaatgtggttgtcaatttagttgtcaagcaaattgatgttcaaataaca 113  Q
    ||||| |||| ||||| | |||||||||||| ||| |||||||||||||||| || |||||||| | |||||||| |||| ||||||||||||||||    
T  1226 tctctctattgctttggtttttgtgccaatagatacttttctttgtaaaaatatgattgtcaatgtggttgtcaaccaaactgatgttcaaataaca 1322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0013 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 1)
Name: scaffold0013
Description:

Target: scaffold0013; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 15 - 77
Target Start/End: Complemental strand, 94873 - 94811
Alignment:
Q  15 tctctctatattactttgatatttgtgccaatacatatttttctttgtaaaaatgtggttgtc 77  Q
    ||||||| |||||||||||| ||||||| ||||||||||||||||||||||||| | ||||||    
T  94873 tctctctctattactttgatttttgtgctaatacatatttttctttgtaaaaatatagttgtc 94811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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