View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15025_low_48 (Length: 284)
Name: NF15025_low_48
Description: NF15025
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15025_low_48 |
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Alignment Details
Target: chr5 (Bit Score: 222; Significance: 1e-122; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 18 - 268
Target Start/End: Original strand, 6300172 - 6300422
Alignment:
| Q |
18 |
cactgttgaagggtgaaacgccagctacataggcttgtcttctgatattgctgcttgttgttggatgcaacaatactctttctgagttccaccctttttg |
117 |
Q |
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| T |
6300172 |
cactgttgaagggtgaaacgccagctacataggcttgtcttctgatattgctgcttgttgttggatgcaacaatactctttctgagttccaccctttttg |
6300271 |
T |
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| Q |
118 |
gttttcaatgnnnnnnnctctgtagtttggttcctttggacttaggaatgaacctagtttctgagaggtaccagaattctttttcatattaacactaact |
217 |
Q |
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|||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
6300272 |
gttttcaatgtttttttctctgtaatttggttcctttggacttaggaatgaacctagtttctgagagggaccagaattctttttcatattaacactaact |
6300371 |
T |
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| Q |
218 |
cagttttgcagcttgcaaaaccctcttgagaagcactatgtgactaccaat |
268 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6300372 |
cagttttgcagcttgcaaaaccctcttgagaagcactatgtgactaccaat |
6300422 |
T |
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