View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15025_low_5 (Length: 592)
Name: NF15025_low_5
Description: NF15025
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15025_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 533; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 533; E-Value: 0
Query Start/End: Original strand, 18 - 579
Target Start/End: Complemental strand, 39587028 - 39586461
Alignment:
| Q |
18 |
accggccacctcttctggcaggcaaacacatcggatacaactacaccgcggtaaccgttgctccttatggcgatcactggcgtaacgtccgtcgtataat |
117 |
Q |
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| T |
39587028 |
accggccacctcttctggcaggcaaacacatcggatacaactacaccgcggtaaccgttgctccttatggcgatcactggcgtaacgtccgtcgtataat |
39586929 |
T |
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| Q |
118 |
ctcccttgacgttctctcaacacaccgtttaaactcatttttacgtattagaaaaaacgaaatcatgaaactcatgcaagccctagctcgtggttctagt |
217 |
Q |
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| T |
39586928 |
ctcccttgacgttctctcaacacaccgtttaaactcatttttacgtattagaaaaaacgaaatcatgaaactcatgcaagccctagctcgtggttctagt |
39586829 |
T |
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| Q |
218 |
tctag------cgacggttttgcgagagtggagttgaaaacaaagctttcggagatgacttttaacacgataatgagaatgatatctggaaagagatatt |
311 |
Q |
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| T |
39586828 |
tctagttctagcgacggttttgtgagagtggagttgaaaacaaagctttcggagatgacttttaacacgataatgagaatgatatctggaaagagatatt |
39586729 |
T |
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| Q |
312 |
atggtgaggattgtgatgtgagtgatgaagaagaagctaagggatttagggagatgattaaggagatggtatcgttgggtggttcgagtaatcctggtga |
411 |
Q |
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| T |
39586728 |
atggtgaggattgtgatgtgagtgatgaagaagaagctaagggatttagggagatgattaaggagatggtatcgttgggtggttcgagtaatcctggtga |
39586629 |
T |
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| Q |
412 |
atttgttgggattttgaggtggttcgattttggtggttatgaaaagaagttgaaaaggattgcaagaagatttgatgggtttttgcagggtttgattgat |
511 |
Q |
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| T |
39586628 |
atttgttgggattttgaggtggtttgattttggtggttatgaaaagaagttgaaaaggattgcaagaagatttgatgggtttttgcaaggtttgattgat |
39586529 |
T |
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| Q |
512 |
gagcataggaggaagaaggagaaggggaataacatgattgatcatctcttgaacttgcaagaattatc |
579 |
Q |
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| T |
39586528 |
gagcataggaggaagaaggagaaggggaataacatgattgatcatctcttgaacttgcaagaattatc |
39586461 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 284 - 324
Target Start/End: Original strand, 38954399 - 38954439
Alignment:
| Q |
284 |
atgagaatgatatctggaaagagatattatggtgaggattg |
324 |
Q |
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| T |
38954399 |
atgagaatgatctctggaaagagatactatggtgatgattg |
38954439 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 258 - 338
Target Start/End: Original strand, 5884330 - 5884410
Alignment:
| Q |
258 |
tttcggagatgacttttaacacgataatgagaatgatatctggaaagagatattatggtgaggattgtgatgtgagtgatg |
338 |
Q |
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| T |
5884330 |
tttcggaaatgacatttaatactataatgagaatggtgtcggggaaaagatactatggaaatgattgtgatgtgagtgatg |
5884410 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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