View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15025_low_52 (Length: 265)
Name: NF15025_low_52
Description: NF15025
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15025_low_52 |
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Alignment Details
Target: chr1 (Bit Score: 151; Significance: 6e-80; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 151; E-Value: 6e-80
Query Start/End: Original strand, 87 - 249
Target Start/End: Complemental strand, 45314609 - 45314447
Alignment:
| Q |
87 |
caaatagcttcttcaccaaaattttaactttataccaaaataatcagcaattccaatcacagttgataaaatataagcataaacaagcaagataaaaaca |
186 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
45314609 |
caaatagcttcttcaccaaaattttaactttataccaaaataatcagcaattccaatcacagttgataaaatataagcataaacaagcacgataaaaaca |
45314510 |
T |
|
| Q |
187 |
gatgtggtcgatgaagcggacagggtatcaaccgacaagtttaccaaccctgtgaggagattt |
249 |
Q |
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| T |
45314509 |
gatatggtcgatgaagcggacagggtatcaatcgacaagtttaccaaccctgtgaggagattt |
45314447 |
T |
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Target: chr8 (Bit Score: 139; Significance: 8e-73; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 139; E-Value: 8e-73
Query Start/End: Original strand, 87 - 249
Target Start/End: Complemental strand, 27760534 - 27760372
Alignment:
| Q |
87 |
caaatagcttcttcaccaaaattttaactttataccaaaataatcagcaattccaatcacagttgataaaatataagcataaacaagcaagataaaaaca |
186 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
27760534 |
caaatagcttcttcaccaaaattttaactttatatcaaaataatcagcaattccaatcacagttgataaaatataagcatagacaagcaagataaaaaca |
27760435 |
T |
|
| Q |
187 |
gatgtggtcgatgaagcggacagggtatcaaccgacaagtttaccaaccctgtgaggagattt |
249 |
Q |
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||||||||||||||||| |||||||||||||| ||||||||||||||||| ||||| |||||| |
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| T |
27760434 |
gatgtggtcgatgaagcagacagggtatcaacagacaagtttaccaacccagtgagaagattt |
27760372 |
T |
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