View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15025_low_56 (Length: 243)

Name: NF15025_low_56
Description: NF15025
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15025_low_56
NF15025_low_56
[»] chr1 (4 HSPs)
chr1 (172-233)||(13411555-13411616)
chr1 (172-233)||(20355275-20355336)
chr1 (172-233)||(20555570-20555631)
chr1 (19-73)||(13411407-13411462)
[»] scaffold0592 (2 HSPs)
scaffold0592 (172-233)||(1739-1801)
scaffold0592 (172-233)||(7943-8005)
[»] chr2 (1 HSPs)
chr2 (172-205)||(38062480-38062513)
[»] scaffold0006 (1 HSPs)
scaffold0006 (205-233)||(283801-283829)


Alignment Details
Target: chr1 (Bit Score: 62; Significance: 7e-27; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 172 - 233
Target Start/End: Original strand, 13411555 - 13411616
Alignment:
Q  172 tagtgaacgaaagttatcttacatatattctctgcattttaatttgttatcactctgttcat 233  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13411555 tagtgaacgaaagttatcttacatatattctctgcattttaatttgttatcactctgttcat 13411616  T

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Target: chr1; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 172 - 233
Target Start/End: Original strand, 20355275 - 20355336
Alignment:
Q  172 tagtgaacgaaagttatcttacatatattctctgcattttaatttgttatcactctgttcat 233  Q
    |||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||    
T  20355275 tagtgaacgaaagttatcttatgtatattctctgcattttaatttgttatcactctgttcat 20355336  T

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Target: chr1; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 172 - 233
Target Start/End: Complemental strand, 20555631 - 20555570
Alignment:
Q  172 tagtgaacgaaagttatcttacatatattctctgcattttaatttgttatcactctgttcat 233  Q
    |||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||    
T  20555631 tagtgaacgaaagttatcttatgtatattctctgcattttaatttgttatcactctgttcat 20555570  T

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Target: chr1; HSP #4
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 19 - 73
Target Start/End: Original strand, 13411407 - 13411462
Alignment:
Q  19 ttaagcttaaacaaaa-atacctttgctcattgtctttaagaattaatctcttact 73  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  13411407 ttaagcttaaacaaaaaatacctttgctcattgtctttaagaattaatctcttact 13411462  T

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Target: scaffold0592 (Bit Score: 35; Significance: 0.00000000009; HSPs: 2)
Name: scaffold0592
Description:

Target: scaffold0592; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 172 - 233
Target Start/End: Original strand, 1739 - 1801
Alignment:
Q  172 tagtgaacgaaagttatcttacatatattctctgca-ttttaatttgttatcactctgttcat 233  Q
    ||||||||||||||||||| | ||||||| |||||| | ||||||||||||||| ||||||||    
T  1739 tagtgaacgaaagttatctcatatatattatctgcactattaatttgttatcacactgttcat 1801  T

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Target: scaffold0592; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 172 - 233
Target Start/End: Original strand, 7943 - 8005
Alignment:
Q  172 tagtgaacgaaagttatcttacatatattctctgca-ttttaatttgttatcactctgttcat 233  Q
    ||||||||||||||||||| | ||||||| |||||| | ||||||||||||||| ||||||||    
T  7943 tagtgaacgaaagttatctcatatatattatctgcactattaatttgttatcacactgttcat 8005  T

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Target: chr2 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 172 - 205
Target Start/End: Complemental strand, 38062513 - 38062480
Alignment:
Q  172 tagtgaacgaaagttatcttacatatattctctg 205  Q
    ||||||||||||||||||||| ||||||||||||    
T  38062513 tagtgaacgaaagttatcttatatatattctctg 38062480  T

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Target: scaffold0006 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 205 - 233
Target Start/End: Original strand, 283801 - 283829
Alignment:
Q  205 gcattttaatttgttatcactctgttcat 233  Q
    |||||||||||||||||||||||||||||    
T  283801 gcattttaatttgttatcactctgttcat 283829  T

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