View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15025_low_6 (Length: 563)
Name: NF15025_low_6
Description: NF15025
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15025_low_6 |
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Alignment Details
Target: chr5 (Bit Score: 415; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 415; E-Value: 0
Query Start/End: Original strand, 97 - 549
Target Start/End: Original strand, 14843909 - 14844360
Alignment:
| Q |
97 |
taaataaaggccgttgcaccaccatggcagaatggcatggtggattcaatatgtgaagggtggtccaccatggtgatgcataggctgcaacattgtgttt |
196 |
Q |
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|||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14843909 |
taaataaaggtcgctgcaccaccatggcagaatggcatggtggattcaatatgtgaagggtggtccaccatggtgatgcataggctgcaacattgtgttt |
14844008 |
T |
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| Q |
197 |
ataaagaaaaaatctggccttccatcatcgccatctgatggcgcttactgcaaatgcaaaagataagaaaatcattagtagtaaaagtgttgtcaatgg- |
295 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14844009 |
ataaagaaaaaatctggccttccatcatcgccatctgatgacgcttactgcaaatgcaaaagataagaaaatcattagtagtaaaagtgttgtcaatggg |
14844108 |
T |
|
| Q |
296 |
tggaatatggcaaaatgtcaaaaataagtcgtaaaaaacatgtcattgcgcggccaatggcgccattctggtcgtcatttaacaactctgaagaaaagat |
395 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14844109 |
tggaatatggcaaaatgtcaaaaataagtcgtaaaaaacatgccattgcg--gccaatggcgccattctggtcgtcatttaacaactctgaagaaaagat |
14844206 |
T |
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| Q |
396 |
aatctaagttatatattttacttggctggtgtctaaattctgatattaaggattacatcatttagtacacacgtggatataaatttctagagatctacca |
495 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14844207 |
aatctaagttatatattttacttggctggtgtctaaattctgatattaaggattacatcatttagtacacacgtggatataaatttctagagatctacca |
14844306 |
T |
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| Q |
496 |
taaatgtagttgttacagtctgcctgatgtttgttttatcacaggtgataagtg |
549 |
Q |
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| T |
14844307 |
taaatgtagttgttacagtctgcctgatgtttgttttatcacagttgataagtg |
14844360 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 1 - 97
Target Start/End: Complemental strand, 24045271 - 24045173
Alignment:
| Q |
1 |
ttttgcagttacccaaacatcttcaaaaa--tggtgaaatggcgtttgaacatctagactcgcgtttgaggctggaaaacgcgtatccaaacagttact |
97 |
Q |
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||||||||||||||||||||||| ||||| ||||||||| || |||||| |||| |||||| |||| || ||||||||| || |||||||| |||| |
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| T |
24045271 |
ttttgcagttacccaaacatcttaaaaaaaatggtgaaatcgcttttgaatctctaaactcgcttttggggtcggaaaacgcatacccaaacaggtact |
24045173 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 80; Significance: 3e-37; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 1 - 92
Target Start/End: Original strand, 47218184 - 47218275
Alignment:
| Q |
1 |
ttttgcagttacccaaacatcttcaaaaatggtgaaatggcgtttgaacatctagactcgcgtttgaggctggaaaacgcgtatccaaacag |
92 |
Q |
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| T |
47218184 |
ttttgcagttacccaaacatcttcaaaaatggtgaaatggcatttgaacatctagactcacgtttgaggctgaaaaacgcgtatccaaacag |
47218275 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 77; Significance: 2e-35; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 1 - 92
Target Start/End: Original strand, 20830740 - 20830829
Alignment:
| Q |
1 |
ttttgcagttacccaaacatcttcaaaaatggtgaaatggcgtttgaacatctagactcgcgtttgaggctggaaaacgcgtatccaaacag |
92 |
Q |
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|||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20830740 |
ttttgcagttacccaaac--cttcaaaaatggtgaaatggtgtttgaacatctagactcgcgtttgaggctggaaaacgcgtatccaaacag |
20830829 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 76; Significance: 7e-35; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 1 - 92
Target Start/End: Original strand, 2175705 - 2175796
Alignment:
| Q |
1 |
ttttgcagttacccaaacatcttcaaaaatggtgaaatggcgtttgaacatctagactcgcgtttgaggctggaaaacgcgtatccaaacag |
92 |
Q |
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| T |
2175705 |
ttttgcagttatccaaacatcttaaaaaatggtgaaatggcgtttgaacatctagactcacgtttgagggtggaaaacgcgtatccaaacag |
2175796 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 56; Significance: 6e-23; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 1 - 92
Target Start/End: Complemental strand, 36547632 - 36547541
Alignment:
| Q |
1 |
ttttgcagttacccaaacatcttcaaaaatggtgaaatggcgtttgaacatctagactcgcgtttgaggctggaaaacgcgtatccaaacag |
92 |
Q |
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||||||||||||||||||||||| ||||||||||||||||| |||||| |||| |||||| |||| | |||||||||||||||||||||| |
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| T |
36547632 |
ttttgcagttacccaaacatcttaaaaaatggtgaaatggcttttgaatctctaaactcgcttttgggattggaaaacgcgtatccaaacag |
36547541 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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