View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15025_low_60 (Length: 233)
Name: NF15025_low_60
Description: NF15025
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15025_low_60 |
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Alignment Details
Target: chr5 (Bit Score: 199; Significance: 1e-108; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 15 - 221
Target Start/End: Original strand, 7570613 - 7570819
Alignment:
| Q |
15 |
atttctaacatatttgaatatccttatcaagcacatgtttagttttagaattgtttaatgacatatataagattttccaattctaggttcctattgctat |
114 |
Q |
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| T |
7570613 |
atttctaacatatttgaatattcttatcaagcacatgtttagttttagaattgtttaatgacatatatatgattttccaattctaggttcctattgctat |
7570712 |
T |
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| Q |
115 |
ctctgttacgctttttgaagctgtatgcatatacaaaggaacaagagtgattaaatcaaagggaaaggaagttaaaaatatgaagatttatcaaatattg |
214 |
Q |
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| T |
7570713 |
ctctgttacgctttttgaagctgtatgcatatacaaaggaacaagagtgattaaatcaaagggaaaggaagttaaaaatatgaagatttatcaaatattg |
7570812 |
T |
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| Q |
215 |
ctatatt |
221 |
Q |
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| T |
7570813 |
ctatatt |
7570819 |
T |
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Target: chr8 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 99 - 184
Target Start/End: Complemental strand, 33124319 - 33124234
Alignment:
| Q |
99 |
aggttcctattgctatctctgttacgctttttgaagctgtatgcatatacaaaggaacaagagtgattaaatcaaagggaaaggaa |
184 |
Q |
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| T |
33124319 |
aggtgcctattgcaatttctgttacactttttgaagccatatgcttatgcaaaggaactagagtaattgcatcaaggggaaaggaa |
33124234 |
T |
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