View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15025_low_61 (Length: 229)
Name: NF15025_low_61
Description: NF15025
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15025_low_61 |
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Alignment Details
Target: chr2 (Bit Score: 188; Significance: 1e-102; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 1 - 217
Target Start/End: Original strand, 11584039 - 11584255
Alignment:
| Q |
1 |
atgtaaataatttattttgatactattgactaatttattatattatgtgcatgcatgaatctccttttagtatgagatgatgcnnnnnnnggaagtatca |
100 |
Q |
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| T |
11584039 |
atgtaaataatttattttgatactattaactaatttactatattatgtgcatgcatgaatctccttttagtatgagatgatgcaaaaaaaggaagtatca |
11584138 |
T |
|
| Q |
101 |
ttagaactaaagttaggtcttcctaaaagctcgacacgtggaagcacctccttgaatctagatagaggttcaagttcaaaaagttctttagaaatacaaa |
200 |
Q |
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| T |
11584139 |
ttagaactaaagttaggtcttcctaaaagctcgacacgtggaagcacctccttgaatctagatagaggttcaagttcaaaaagttctttagaaatacaaa |
11584238 |
T |
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| Q |
201 |
atccaatgatgttggtg |
217 |
Q |
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| T |
11584239 |
atccaatgatgttggtg |
11584255 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 47; Significance: 6e-18; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 25 - 79
Target Start/End: Original strand, 14827029 - 14827083
Alignment:
| Q |
25 |
attgactaatttattatattatgtgcatgcatgaatctccttttagtatgagatg |
79 |
Q |
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| T |
14827029 |
attgactaatttattatattatgtgtatgcatgaatctctttttagtatgagatg |
14827083 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 22 - 79
Target Start/End: Original strand, 6763083 - 6763140
Alignment:
| Q |
22 |
actattgactaatttattatattatgtgcatgcatgaatctccttttagtatgagatg |
79 |
Q |
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| T |
6763083 |
actattgactaacttattatattatgtgtatacatgaatctctttttagtataagatg |
6763140 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 26 - 79
Target Start/End: Complemental strand, 14828249 - 14828196
Alignment:
| Q |
26 |
ttgactaatttattatattatgtgcatgcatgaatctccttttagtatgagatg |
79 |
Q |
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||||||||||||| |||| ||||| |||||| |||||| ||||||||||||||| |
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| T |
14828249 |
ttgactaatttatgatatcatgtgtatgcataaatctcattttagtatgagatg |
14828196 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 149 - 191
Target Start/End: Original strand, 14827182 - 14827224
Alignment:
| Q |
149 |
tccttgaatctagatagaggttcaagttcaaaaagttctttag |
191 |
Q |
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| T |
14827182 |
tccttgaatctagatattggttcaagttcaaaaacttctttag |
14827224 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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