View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15025_low_64 (Length: 226)
Name: NF15025_low_64
Description: NF15025
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15025_low_64 |
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Alignment Details
Target: chr1 (Bit Score: 184; Significance: 1e-99; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 19 - 218
Target Start/End: Original strand, 7623130 - 7623329
Alignment:
| Q |
19 |
ttgacgtggtcaagagtaagatcaaaagagagtgagttatcattcatcatctgcaaaaatatatcgatgatatctgcaacttcttgttccttggttgtag |
118 |
Q |
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| T |
7623130 |
ttgacgtggtcaagagtaagatcaaaagagagtgagttatcattcatcatctgcaaaaatatatcaatgatatctgcaacttcttgctccttggttttag |
7623229 |
T |
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| Q |
119 |
gctttgttgaattatccatgtggtcatcaatgacttgttggtatatcaaatccaactccttgaactttttatcaagcctcccaagagttcctttgcttct |
218 |
Q |
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| T |
7623230 |
gctttgttgaattatccatgtggtcatcaatgacttgttggtatatcaaatccaactccttgaactttttatcaagcctcccaagagttcctttgattct |
7623329 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 19 - 213
Target Start/End: Original strand, 7636222 - 7636416
Alignment:
| Q |
19 |
ttgacgtggtcaagagtaagatcaaaagagagtgagttatcattcatcatctgcaaaaatatatcgatgatatctgcaacttcttgttccttggttgtag |
118 |
Q |
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| T |
7636222 |
ttgatgtggtcaagagtgagatcaaaagagagtgagtgatcattcatcatctgcaataagatatcaataatatcatctacttcttgttccttagttttag |
7636321 |
T |
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| Q |
119 |
gctttgttgaattatccatgtggtcatcaatgacttgttggtatatcaaatccaactccttgaactttttatcaagcctcccaagagttcctttg |
213 |
Q |
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| T |
7636322 |
gccttgctgaattatccatgtggtcatcaataactctttggtatatcaaatccaactccttgaatgttttatcaagcctcccaagagttcctttg |
7636416 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 19 - 213
Target Start/End: Original strand, 7629439 - 7629633
Alignment:
| Q |
19 |
ttgacgtggtcaagagtaagatcaaaagagagtgagttatcattcatcatctgcaaaaatatatcgatgatatctgcaacttcttgttccttggttgtag |
118 |
Q |
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|||| |||||| ||||| ||||||||||||||||| | |||||||||||| || || || ||||| || ||||| | |||||||||||||| ||| ||| |
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| T |
7629439 |
ttgatgtggtcgagagtgagatcaaaagagagtgaatgatcattcatcatttgtaataagatatcaataatatcatctacttcttgttccttagttttag |
7629538 |
T |
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| Q |
119 |
gctttgttgaattatccatgtggtcatcaatgacttgttggtatatcaaatccaactccttgaactttttatcaagcctcccaagagttcctttg |
213 |
Q |
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| T |
7629539 |
gccttgctgaataatccatgtggtcatcaataactctttggtatatcaaatccaactccttgaacgttttatcaagcctcccaagtgttcctttg |
7629633 |
T |
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