View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15026_high_11 (Length: 392)
Name: NF15026_high_11
Description: NF15026
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15026_high_11 |
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Alignment Details
Target: chr1 (Bit Score: 369; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 369; E-Value: 0
Query Start/End: Original strand, 1 - 373
Target Start/End: Original strand, 1196797 - 1197169
Alignment:
| Q |
1 |
ttatatttatctacacaatggactttgaggatgatgagaacaagcaagttgattttctaaagaacaataacccatcatctcttcaatgctaattgatcta |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1196797 |
ttatatttatctacacaatggactttgaggatgatgagaacaagcaagttgattttctaaagaacaataacccatcatctcttcaatgctaattgatcta |
1196896 |
T |
|
| Q |
101 |
cattcttgatttgaaaacttgtccttattctttccatgatcttcaaccatcttcaaaatactctcaaaagtagagacttcacaaggaatcctcaatacac |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1196897 |
cattcttgatttgaaaacttgtccttattctttccatgatcttcaaccatcttcaaaatactctcaaaagtagagacttcacaaggaatcctcaatacac |
1196996 |
T |
|
| Q |
201 |
cagcttgttgaaacccaaattcttcttcagcttctctcaaaagaatctgaaaagcttgatgacccaaatattcagttggtatgatgaacctcttaagctc |
300 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1196997 |
cagcttgttgaaacccaaattcttcttcagcttctctcaaaagaatctgaaaagcttgatgacccaaatattcagttggtatgatgaacctcttaagctc |
1197096 |
T |
|
| Q |
301 |
ttctccaacacaaacagctaaatacccttttggaacagaaccattgttgtttgatgatgttgttcctccttca |
373 |
Q |
| |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1197097 |
ttctccaacacaaacagctaaatatccttttggaacagaaccattgttgtttgatgatgttgttcctccttca |
1197169 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 270; Significance: 1e-151; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 1 - 373
Target Start/End: Complemental strand, 7289783 - 7289410
Alignment:
| Q |
1 |
ttatatttatctacacaatggactttgaggatgatgagaacaagcaagttgattttctaaagaacaataacccatcatctcttcaatgctaattgatcta |
100 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||| | |||| |||||||||||||||||||| |||||| |||||||||| |||||||||| |
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| T |
7289783 |
ttatatttatctacacaatggactttgaggatgatgagaacaaacgagttaattttctaaagaacaataactcatcatttcttcaatgccaattgatcta |
7289684 |
T |
|
| Q |
101 |
cattcttgatttgaaaacttgtccttattctttccatgatcttcaaccatcttcaaaatactctcaaaagtagagacttcacaaggaatcctcaatacac |
200 |
Q |
| |
|
|||||||| |||||| ||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||| |||| |
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| T |
7289683 |
cattcttg-tttgaacacta-tccttattctttccatgatcttcaaccatcttcaaaatacactcaaaagtagagacttcacaaagaatcctcaaaacac |
7289586 |
T |
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| Q |
201 |
cagcttgttgaaacccaaattcttcttcagcttctctcaaaagaatctgaaaagcttgatgacccaaatattcagt---tggtatgatgaacctcttaag |
297 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||| |
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| T |
7289585 |
cagcttgttgaaacccaaattcttcttcagcttctctcaaaagaatctgaaaagcttgatgacacaaatattcagttggtggtatgatgaacctcttaag |
7289486 |
T |
|
| Q |
298 |
ctcttctccaacacaaacagctaaatacccttttggaacagaaccattgttgtttgatgatgttgttcctccttca |
373 |
Q |
| |
|
|||||||||| |||||||||||||||||||||| | ||| |||||||||| |||||||||||| ||||||||||| |
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|
| T |
7289485 |
ttcttctccaatacaaacagctaaatacccttttaggacataaccattgttctttgatgatgttattcctccttca |
7289410 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 64; Significance: 7e-28; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 141 - 320
Target Start/End: Complemental strand, 50471318 - 50471139
Alignment:
| Q |
141 |
cttcaaccatcttcaaaatactctcaaaagtagagacttcacaaggaatcctcaatacaccagcttgttgaaacccaaattcttcttcagcttctctcaa |
240 |
Q |
| |
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|||||||||||||||| ||||||||||| || |||||||||||||| |||| ||||||| ||||| ||||||||||||||||||||||||||| | |
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| T |
50471318 |
cttcaaccatcttcaagatactctcaaacactgaaacttcacaaggaattctcagaacaccagtttgttcaaacccaaattcttcttcagcttctctgag |
50471219 |
T |
|
| Q |
241 |
aagaatctgaaaagcttgatgacccaaatattcagttggtatgatgaacctcttaagctcttctccaacacaaacagcta |
320 |
Q |
| |
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| || ||||| ||||||||| ||||||| || |||||||| | ||||| ||||| ||| | ||||||||||| |||| |
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| T |
50471218 |
taatatatgaaaggcttgatgagccaaatactcggttggtataacaaacctgttaaggtctacaccaacacaaacggcta |
50471139 |
T |
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