View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15026_high_14 (Length: 351)
Name: NF15026_high_14
Description: NF15026
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15026_high_14 |
 | |
|
| [»] chr4 (3 HSPs) |
| |
|
| [»] chr5 (1 HSPs) |
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|
| [»] chr7 (9 HSPs) |
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|
Alignment Details
Target: chr4 (Bit Score: 339; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 1 - 351
Target Start/End: Original strand, 49351671 - 49352021
Alignment:
| Q |
1 |
ttgtttatcgctttcaaatggcacaccaaatcaaacacatcaaagagagatttgataaggttgctgctgataggcttaagtttggccttcaaatcaatga |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49351671 |
ttgtttatcgctttcaaatggcacaccaaatcaaacatatcaaagagagatttgataaggttgctgctgataggcttaagtttggccttcaaatcaatga |
49351770 |
T |
|
| Q |
101 |
tagtgataatcgtgttgtaaaaaggcgcgaattgacacattcatatgtgattggttctgatgtgataggaagggaacatgataaacaaaaaatcattgat |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49351771 |
tagtgataatcgtgttgtaaaaaggcgcgaattgacacattcatatgtgattgattctgatgtgataggaagggaacatgataaacaaaaaatcattgat |
49351870 |
T |
|
| Q |
201 |
atgttattgcaagatagcggtgatagtaatagtctctctgttattcctgttgttggaattggaggattaggaaagactacacttgcaaaggcagtgttta |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49351871 |
atgttattgcaagatagcggtgatagtaatagtctctctgttattcctgttgttggaattggaggattaggaaagactacacttgcaaaggcagtgttta |
49351970 |
T |
|
| Q |
301 |
atgagaagagtttagatgagacttttccattgaagatgtgggtgtgtgtct |
351 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49351971 |
atgataagagtttagatgagacttttccattgaagatgtgggtgtgtgtct |
49352021 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 1 - 351
Target Start/End: Original strand, 49340307 - 49340657
Alignment:
| Q |
1 |
ttgtttatcgctttcaaatggcacaccaaatcaaacacatcaaagagagatttgataaggttgctgctgataggcttaagtttggccttcaaatcaatga |
100 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||| |||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49340307 |
ttgtttatcgctttcaaatggcacatcaaatcaaacatatcaaagaaagatttgataagtttgctgctgataggcttaagtttggccttcaaatcaatga |
49340406 |
T |
|
| Q |
101 |
tagtgataatcgtgttgtaaaaaggcgcgaattgacacattcatatgtgattggttctgatgtgataggaagggaacatgataaacaaaaaatcattgat |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||| || |
|
|
| T |
49340407 |
tagtgataatcgtgttgtaaaaaggcgcgaattgacacattcatatgtgattgattctgatgtgataggaagaaaacatgataaacaaaaaatcattaat |
49340506 |
T |
|
| Q |
201 |
atgttattgcaagatagcggtgatagtaatagtctctctgttattcctgttgttggaattggaggattaggaaagactacacttgcaaaggcagtgttta |
300 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||| ||||||| |
|
|
| T |
49340507 |
ctgttattgcaagatagtggtgatagtaatagtctctctgttattcctattgttggaattggaggattaggaaaaactacacttgcaaaggtcgtgttta |
49340606 |
T |
|
| Q |
301 |
atgagaagagtttagatgagacttttccattgaagatgtgggtgtgtgtct |
351 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49340607 |
atgataagagtttagatgagacttttccattgaagatgtgggtgtgtgtct |
49340657 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 259 - 349
Target Start/End: Original strand, 19030339 - 19030429
Alignment:
| Q |
259 |
ttggaggattaggaaagactacacttgcaaaggcagtgtttaatgagaagagtttagatgagacttttccattgaagatgtgggtgtgtgt |
349 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19030339 |
ttggaggattaggaaaaactacacttgcaaaggcagtgtttaatgttaagagtttagatgagacttttccattgaagatgtgggtgtgtgt |
19030429 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 251; Significance: 1e-139; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 1 - 351
Target Start/End: Complemental strand, 32784604 - 32784254
Alignment:
| Q |
1 |
ttgtttatcgctttcaaatggcacaccaaatcaaacacatcaaagagagatttgataaggttgctgctgataggcttaagtttggccttcaaatcaatga |
100 |
Q |
| |
|
||||||| ||| || |||||| || ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32784604 |
ttgtttaccgccttaaaatggtgcatcaaatcaaacatatcaaagagagatttgataaggttgctgctgataggcttaagtttggccttcaaatcaatga |
32784505 |
T |
|
| Q |
101 |
tagtgataatcgtgttgtaaaaaggcgcgaattgacacattcatatgtgattggttctgatgtgataggaagggaacatgataaacaaaaaatcattgat |
200 |
Q |
| |
|
||||||||| |||||||||||||| || |||||||||||||||||||||| || |||||||||||||||||| ||||||||||||||||||||||| || |
|
|
| T |
32784504 |
tagtgataaccgtgttgtaaaaagacgtgaattgacacattcatatgtgaatgattctgatgtgataggaagaaaacatgataaacaaaaaatcattaat |
32784405 |
T |
|
| Q |
201 |
atgttattgcaagatagcggtgatagtaatagtctctctgttattcctgttgttggaattggaggattaggaaagactacacttgcaaaggcagtgttta |
300 |
Q |
| |
|
|||||||| |||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||| ||||||||||||||| |
|
|
| T |
32784404 |
cagttattgctagatagtggtgatagtaatagtctctctgttattcctattgttggaattggaggattaggaaaaactacactttcaaaggcagtgttta |
32784305 |
T |
|
| Q |
301 |
atgagaagagtttagatgagacttttccattgaagatgtgggtgtgtgtct |
351 |
Q |
| |
|
|||| ||||||||||||||||||||| |||||||||||||||| ||||||| |
|
|
| T |
32784304 |
atgataagagtttagatgagactttttcattgaagatgtgggtttgtgtct |
32784254 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 169; Significance: 1e-90; HSPs: 9)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 1 - 351
Target Start/End: Original strand, 29743035 - 29743382
Alignment:
| Q |
1 |
ttgtttatcgctttcaaatggcacaccaaatcaaacacatcaaagagagatttgataaggttgctgctgataggcttaagtttggccttcaaatcaatga |
100 |
Q |
| |
|
||||||||||| || |||||||||| ||||||||||| || || ||| ||| ||||||||||||||||| ||| ||| |||||||||| ||||||||| |
|
|
| T |
29743035 |
ttgtttatcgccttaaaatggcacatcaaatcaaacatattaataagaaattgaataaggttgctgctgatcggcataactttggccttcgaatcaatga |
29743134 |
T |
|
| Q |
101 |
tagtgataatcgtgttgtaaaaaggcgcgaattgacacattcatatgtgattggttctgatgtgataggaagggaacatgataaacaaaaaatcattgat |
200 |
Q |
| |
|
||||||||||| ||||||||||||||| || ||||| ||||| |||| |||| |||||||||||||||||| ||| | |||||||| ||||| |||||| |
|
|
| T |
29743135 |
tagtgataatcatgttgtaaaaaggcgtgagttgactcattcgcatgtaattgattctgatgtgataggaagagaaaacgataaacacaaaattattgat |
29743234 |
T |
|
| Q |
201 |
atgttattgcaagatagcggtgatagtaatagtctctctgttattcctgttgttggaattggaggattaggaaagactacacttgcaaaggcagtgttta |
300 |
Q |
| |
|
| ||||||||||||| ||||| ||| | |||||||||||||||| |||||||||||||||| || ||||||||||| ||||||||| ||||||| | |
|
|
| T |
29743235 |
ctcttattgcaagata---gtgatcataaaattctctctgttattcctattgttggaattggaggcttgggaaagactacgcttgcaaagacagtgttca |
29743331 |
T |
|
| Q |
301 |
atgagaagagtttagatgagacttttccattgaagatgtgggtgtgtgtct |
351 |
Q |
| |
|
|||| ||||||||||| |||||||||||||| ||||||||||||||||||| |
|
|
| T |
29743332 |
atgataagagtttagacgagacttttccattaaagatgtgggtgtgtgtct |
29743382 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 1 - 351
Target Start/End: Complemental strand, 29603222 - 29602875
Alignment:
| Q |
1 |
ttgtttatcgctttcaaatggcacaccaaatcaaacacatcaaagagagatttgataaggttgctgctgataggcttaagtttggccttcaaatcaatga |
100 |
Q |
| |
|
||||||||||| || |||||||||| ||||||||||| || || ||||||| ||||| ||||||| ||||| ||| |||||||||||||||||||| |
|
|
| T |
29603222 |
ttgtttatcgccttaaaatggcacatcaaatcaaacatattaataagagattgaataagaacgctgctgctaggcataattttggccttcaaatcaatga |
29603123 |
T |
|
| Q |
101 |
tagtgataatcgtgttgtaaaaaggcgcgaattgacacattcatatgtgattggttctgatgtgataggaagggaacatgataaacaaaaaatcattgat |
200 |
Q |
| |
|
||| ||||||| ||||||||||||||| || ||||| ||||| |||| ||| ||||||||||||||||||||| | ||||| |||||||| |||||| |
|
|
| T |
29603122 |
tagcgataatcatgttgtaaaaaggcgggagttgactcattcgcatgtagttgattctgatgtgataggaagggattacgataagcaaaaaattattgat |
29603023 |
T |
|
| Q |
201 |
atgttattgcaagatagcggtgatagtaatagtctctctgttattcctgttgttggaattggaggattaggaaagactacacttgcaaaggcagtgttta |
300 |
Q |
| |
|
| |||||||||||||| ||| | ||| |||||||||||||||||| |||||||||||||||| || ||||||||||||||||||||| | ||||| | |
|
|
| T |
29603022 |
ctcttattgcaagatagtggtca---taaaagtctctctgttattcctattgttggaattggaggcttgggaaagactacacttgcaaagacggtgttca |
29602926 |
T |
|
| Q |
301 |
atgagaagagtttagatgagacttttccattgaagatgtgggtgtgtgtct |
351 |
Q |
| |
|
|||| ||||||||||| |||||||| ||||| ||||||||||||||||||| |
|
|
| T |
29602925 |
atgataagagtttagacgagactttcccattaaagatgtgggtgtgtgtct |
29602875 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 153; E-Value: 5e-81
Query Start/End: Original strand, 1 - 351
Target Start/End: Original strand, 29750072 - 29750419
Alignment:
| Q |
1 |
ttgtttatcgctttcaaatggcacaccaaatcaaacacatcaaagagagatttgataaggttgctgctgataggcttaagtttggccttcaaatcaatga |
100 |
Q |
| |
|
||||||||||| || |||||||||| ||||||||||| | || ||||||| ||||| ||||||| ||||| ||| |||||||||||||||||||| |
|
|
| T |
29750072 |
ttgtttatcgccttaaaatggcacatcaaatcaaacatgttaataagagattgaataagaacgctgctgctaggcataattttggccttcaaatcaatga |
29750171 |
T |
|
| Q |
101 |
tagtgataatcgtgttgtaaaaaggcgcgaattgacacattcatatgtgattggttctgatgtgataggaagggaacatgataaacaaaaaatcattgat |
200 |
Q |
| |
|
||| ||||||| ||||||||||||||| || ||||| ||||| |||| ||| ||||||||||||||||||||| | ||||| |||||||| |||||| |
|
|
| T |
29750172 |
tagcgataatcatgttgtaaaaaggcgggagttgactcattcgcatgtagttgattctgatgtgataggaagggattacgataagcaaaaaattattgat |
29750271 |
T |
|
| Q |
201 |
atgttattgcaagatagcggtgatagtaatagtctctctgttattcctgttgttggaattggaggattaggaaagactacacttgcaaaggcagtgttta |
300 |
Q |
| |
|
| |||||||||||||| ||| ||| | |||||||||||||||||| |||||||||||||||| || ||||||||||||||||||||| | ||||| | |
|
|
| T |
29750272 |
ctcttattgcaagatagtggtcata---aaagtctctctgttattcctattgttggaattggaggcttgggaaagactacacttgcaaagacggtgttca |
29750368 |
T |
|
| Q |
301 |
atgagaagagtttagatgagacttttccattgaagatgtgggtgtgtgtct |
351 |
Q |
| |
|
|||| ||||||||||| ||||| |||||||| ||||||||||||||||||| |
|
|
| T |
29750369 |
atgataagagtttagacgagacatttccattaaagatgtgggtgtgtgtct |
29750419 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 227 - 347
Target Start/End: Complemental strand, 35958243 - 35958123
Alignment:
| Q |
227 |
taatagtctctctgttattcctgttgttggaattggaggattaggaaagactacacttgcaaaggcagtgtttaatgagaagagtttagatgagactttt |
326 |
Q |
| |
|
||||||||||| ||| ||||| | || ||||||||||| || |||||||| |||||||||||| | ||||| ||||| ||||| | ||| | |||||| |
|
|
| T |
35958243 |
taatagtctctgtgtcattccaatagtgggaattggaggtttgggaaagacaacacttgcaaagtcggtgttcaatgataagaggatggatca-actttt |
35958145 |
T |
|
| Q |
327 |
cca-ttgaagatgtgggtgtgt |
347 |
Q |
| |
|
||| |||||||||||||||||| |
|
|
| T |
35958144 |
ccagttgaagatgtgggtgtgt |
35958123 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 239 - 351
Target Start/End: Complemental strand, 35939573 - 35939461
Alignment:
| Q |
239 |
tgttattcctgttgttggaattggaggattaggaaagactacacttgcaaaggcagtgtttaatgagaagagtttagatgagacttttcc-attgaagat |
337 |
Q |
| |
|
||||||||| |||| ||||||||||||||||| ||||| |||||||||||| ||||| ||||| ||||| | || | |||||||| ||||||||| |
|
|
| T |
35939573 |
tgttattcccattgtgggaattggaggattagggaagaccacacttgcaaagttggtgttcaatgataagagggtgaatca-acttttccaattgaagat |
35939475 |
T |
|
| Q |
338 |
gtgggtgtgtgtct |
351 |
Q |
| |
|
|||| ||||||||| |
|
|
| T |
35939474 |
gtggttgtgtgtct |
35939461 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 239 - 289
Target Start/End: Complemental strand, 35982254 - 35982204
Alignment:
| Q |
239 |
tgttattcctgttgttggaattggaggattaggaaagactacacttgcaaa |
289 |
Q |
| |
|
||||||||| |||| ||||||||||| || |||||||||||||||||||| |
|
|
| T |
35982254 |
tgttattcccattgtgggaattggaggtttgggaaagactacacttgcaaa |
35982204 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 239 - 289
Target Start/End: Complemental strand, 36003666 - 36003616
Alignment:
| Q |
239 |
tgttattcctgttgttggaattggaggattaggaaagactacacttgcaaa |
289 |
Q |
| |
|
||||||||| |||| ||||||||||| || |||||||||||||||||||| |
|
|
| T |
36003666 |
tgttattcccattgtgggaattggaggtttgggaaagactacacttgcaaa |
36003616 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 146 - 196
Target Start/End: Original strand, 36273212 - 36273262
Alignment:
| Q |
146 |
tgtgattggttctgatgtgataggaagggaacatgataaacaaaaaatcat |
196 |
Q |
| |
|
||||||| ||| ||||||||||||||||||||||||||| |||| ||||| |
|
|
| T |
36273212 |
tgtgattaattcagatgtgataggaagggaacatgataaagaaaagatcat |
36273262 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 239 - 351
Target Start/End: Original strand, 36221440 - 36221552
Alignment:
| Q |
239 |
tgttattcctgttgttggaattggaggattaggaaagactacacttgcaaaggcagtgtttaatgagaagagtttagatgagacttttccattgaagatg |
338 |
Q |
| |
|
||||||||| | ||||||||||| || || || ||||| |||||||||| | ||||| ||||| ||||| ||||||| | ||| | ||||||||| |
|
|
| T |
36221440 |
tgttattcccatagttggaattggtggcttggggaagaccacacttgcaaggttggtgttcaatgataagaggatagatgatattttccaattgaagatt |
36221539 |
T |
|
| Q |
339 |
tgggtgtgtgtct |
351 |
Q |
| |
|
||||||||||||| |
|
|
| T |
36221540 |
tgggtgtgtgtct |
36221552 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 91; Significance: 5e-44; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 1 - 139
Target Start/End: Complemental strand, 13441432 - 13441294
Alignment:
| Q |
1 |
ttgtttatcgctttcaaatggcacaccaaatcaaacacatcaaagagagatttgataaggttgctgctgataggcttaagtttggccttcaaatcaatga |
100 |
Q |
| |
|
||||||||||| || |||||||||| ||||| ||||| |||||||| |||||||||||||||||||||||||| | |||||||| |||||||||||||| |
|
|
| T |
13441432 |
ttgtttatcgccttaaaatggcacatcaaattaaacatatcaaagaaagatttgataaggttgctgctgatagacataagtttgttcttcaaatcaatga |
13441333 |
T |
|
| Q |
101 |
tagtgataatcgtgttgtaaaaaggcgcgaattgacaca |
139 |
Q |
| |
|
||||||||| ||||||||||||||||| ||||||||||| |
|
|
| T |
13441332 |
tagtgataaccgtgttgtaaaaaggcgtgaattgacaca |
13441294 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 81 - 341
Target Start/End: Original strand, 35157291 - 35157545
Alignment:
| Q |
81 |
tttggccttcaaatcaatgatagtgataatcgtgttgtaaaaaggcgcgaattgacacattcatatgtgattggttctgatgtgataggaagggaacatg |
180 |
Q |
| |
|
||||||||||| ||||| || |||||| |||||||||| |||| || ||| || ||||| |||| | || |||||||||||||||||||||||| | |
|
|
| T |
35157291 |
tttggccttcacatcaaagagagtgatgatcgtgttgtgcaaagacgggaa---actcattctcatgtaaatgattctgatgtgataggaagggaacaag |
35157387 |
T |
|
| Q |
181 |
ataaacaaaaaatcattgatatgttattgcaagatagcggtgatagtaatagtctctctgttattcctgttgttggaattggaggattaggaaagactac |
280 |
Q |
| |
|
||||||| ||||| | || | ||||| | ||||| | ||||| ||| || |||||| || || |||| ||| ||||||| | ||||||||||| |
|
|
| T |
35157388 |
ataaacagaaaattgtagaactcttattcgacgatagtgatgataaaaat---ctatctgttgttgctattgtgggacttggaggtatgggaaagactac |
35157484 |
T |
|
| Q |
281 |
acttgcaaaggcagtgtttaatgagaagagtttagatgagacttttccattgaagatgtgg |
341 |
Q |
| |
|
||||||||| | ||||||||||| |||||| ||| ||| |||||||||| ||||||||| |
|
|
| T |
35157485 |
acttgcaaaagttgtgtttaatgataagagtgtagttgactcttttccattaaagatgtgg |
35157545 |
T |
|
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