View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15026_high_15 (Length: 342)
Name: NF15026_high_15
Description: NF15026
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15026_high_15 |
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| [»] scaffold0026 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 282; Significance: 1e-158; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 19 - 328
Target Start/End: Original strand, 34140879 - 34141188
Alignment:
| Q |
19 |
tgaggaacactttgattgcgagtttgtaggtgaaggaaggggagggctttggaaaaaagaggaagtggaagaaataaaagactttaaaagagaggatttt |
118 |
Q |
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| T |
34140879 |
tgaggaacactttgattgcgagtttgtaggtgaaggaaggggagggctttggaaaaaagaggaagtggaagaaatagaagactttaaaagagaggatttt |
34140978 |
T |
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| Q |
119 |
gagaggttagattttcttgatgggcattgctatatattgcgacggaaaatctcacgaaaacatcacgaccaactaaagaaaatacttaattaatttatgt |
218 |
Q |
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| T |
34140979 |
gagaggtaagattttcttgatggacattgctatatattgcgacggaaaatctcacgaaaacatcacgaccaactaaagaaaatacttaattaatttatgt |
34141078 |
T |
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| Q |
219 |
gaaacctttctagttgttcttatttagagcacttgttaaggaaaccaaaattaatatgtttttcaaactcttaaaaaggttatactaaaaaagtgaaggt |
318 |
Q |
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| T |
34141079 |
gaaacctttctagttcttcttatttagagtacttgttaagaaaaccaaaattaatatgtttttcaaactcataaaaaggttatactaaaaaagtgaaggt |
34141178 |
T |
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| Q |
319 |
gaaacatatt |
328 |
Q |
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| T |
34141179 |
gaaacatatt |
34141188 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 28 - 82
Target Start/End: Complemental strand, 1133132 - 1133078
Alignment:
| Q |
28 |
ctttgattgcgagtttgtaggtgaaggaaggggagggctttggaaaaaagaggaa |
82 |
Q |
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| T |
1133132 |
ctttgtttgcgagtttgtaggggaagggaggggaggggtttggaaaaaaaaggaa |
1133078 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 28 - 82
Target Start/End: Original strand, 32858704 - 32858758
Alignment:
| Q |
28 |
ctttgattgcgagtttgtaggtgaaggaaggggagggctttggaaaaaagaggaa |
82 |
Q |
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| T |
32858704 |
ctttgtttgcgagtttggaggggaaggaaggggaggggtttggaaaaaaaaggaa |
32858758 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 28 - 94
Target Start/End: Original strand, 2927736 - 2927800
Alignment:
| Q |
28 |
ctttgattgcgagtttgtaggtgaaggaaggggagggctttggaaaaaagaggaagtggaagaaata |
94 |
Q |
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| T |
2927736 |
ctttgtttgcgagtttgcaggggaagggaggggagtg-tttggaaaaaa-aggaagtggaagaaata |
2927800 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 28 - 77
Target Start/End: Original strand, 53620164 - 53620213
Alignment:
| Q |
28 |
ctttgattgcgagtttgtaggtgaaggaaggggagggctttggaaaaaag |
77 |
Q |
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| T |
53620164 |
ctttgtttgcgagtttggaggggaagggaggtgagggctttggaaaaaag |
53620213 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 28 - 76
Target Start/End: Complemental strand, 32761480 - 32761432
Alignment:
| Q |
28 |
ctttgattgcgagtttgtaggtgaaggaaggggagggctttggaaaaaa |
76 |
Q |
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| T |
32761480 |
ctttgattgcgagtttggaggggaagggaggggagggctttgtaaaaaa |
32761432 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 28 - 77
Target Start/End: Complemental strand, 16625987 - 16625938
Alignment:
| Q |
28 |
ctttgattgcgagtttgtaggtgaaggaaggggagggctttggaaaaaag |
77 |
Q |
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| T |
16625987 |
ctttgtttgcgagtttggaggggaagggaggggagggttttggaaaaaag |
16625938 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 28 - 77
Target Start/End: Original strand, 43496382 - 43496431
Alignment:
| Q |
28 |
ctttgattgcgagtttgtaggtgaaggaaggggagggctttggaaaaaag |
77 |
Q |
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| T |
43496382 |
ctttgtttgcgagtttggaggggaagaaaggggagggttttggaaaaaag |
43496431 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0026 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0026
Description:
Target: scaffold0026; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 28 - 76
Target Start/End: Complemental strand, 82917 - 82869
Alignment:
| Q |
28 |
ctttgattgcgagtttgtaggtgaaggaaggggagggctttggaaaaaa |
76 |
Q |
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| T |
82917 |
ctttgtttgcgagtttggagggaaatgaaggggagggctttggaaaaaa |
82869 |
T |
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