View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15026_high_17 (Length: 312)
Name: NF15026_high_17
Description: NF15026
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15026_high_17 |
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Alignment Details
Target: chr4 (Bit Score: 300; Significance: 1e-169; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 300; E-Value: 1e-169
Query Start/End: Original strand, 1 - 300
Target Start/End: Complemental strand, 30838655 - 30838356
Alignment:
| Q |
1 |
aatataggtggatgccattttcttgtaacatgccaaggtacaatttttgttaccattttgtgttcttttattggtttctatggttgtagctaaatgtggt |
100 |
Q |
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| T |
30838655 |
aatataggtggatgccattttcttgtaacatgccaaggtacaatttttgttaccattttgtgttcttttattggtttctatggttgtagctaaatgtggt |
30838556 |
T |
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| Q |
101 |
tgtgataaattgttttgcaggttcaatggtttgaactttctgaaaggaaataaaggaaaaaagattatgtttgttggtgactctttgagcttaaatcagt |
200 |
Q |
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| T |
30838555 |
tgtgataaattgttttgcaggttcaatggtttgaactttctgaaaggaaataaaggaaaaaagattatgtttgttggtgactctttgagcttaaatcagt |
30838456 |
T |
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| Q |
201 |
tcaattcattggcttgtatgattcatgctgctgtaccaaattctagaagcacattcagacaaagagatgctatctcttcagtcacatttgaggttggttc |
300 |
Q |
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| T |
30838455 |
tcaattcattggcttgtatgattcatgctgctgtaccaaattctagaagcacattcagacaaagagatgctatctcttcagtcacatttgaggttggttc |
30838356 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 57; Significance: 8e-24; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 161 - 225
Target Start/End: Complemental strand, 39308450 - 39308386
Alignment:
| Q |
161 |
aagattatgtttgttggtgactctttgagcttaaatcagttcaattcattggcttgtatgattca |
225 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
39308450 |
aagattatgtttgttggtgattctttgagcttaaatcagttcaattcattggcatgtatgattca |
39308386 |
T |
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