View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15026_high_19 (Length: 271)
Name: NF15026_high_19
Description: NF15026
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15026_high_19 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 80; Significance: 1e-37; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 1 - 84
Target Start/End: Complemental strand, 24506526 - 24506443
Alignment:
| Q |
1 |
ggcacttgatgccaacacaaaattaatccttcctagcgcatgcttcaaaacctgcacaatttacattcaactcacacaaccaac |
84 |
Q |
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| T |
24506526 |
ggcacttgatgccaacacaaaattaatccttcctagcgcatgcttcaaaacctgcacaatttacattcaactcacacaatcaac |
24506443 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 160 - 271
Target Start/End: Complemental strand, 24518013 - 24517902
Alignment:
| Q |
160 |
atcatctcccttgatcttgtaagcgaggaagagttagtcaaccagtcatcataacataccaaaaacttgcaaaaggggagaaccttagctcgaagaatat |
259 |
Q |
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| T |
24518013 |
atcatctaccttgatcatgtaacagaggaagagttagtcaaccaattttcataatataccaaaaaattccataaggagagaaccttagcttgcagaatat |
24517914 |
T |
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| Q |
260 |
ggtagctttgtg |
271 |
Q |
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| T |
24517913 |
ggtagctttgtg |
24517902 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 27 - 83
Target Start/End: Complemental strand, 24518145 - 24518089
Alignment:
| Q |
27 |
tccttcctagcgcatgcttcaaaacctgcacaatttacattcaactcacacaaccaa |
83 |
Q |
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| T |
24518145 |
tcctttctagcacatgcttcaaaccctacataatttacattcaactcatacaaccaa |
24518089 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 49; Significance: 4e-19; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 199 - 271
Target Start/End: Complemental strand, 35456099 - 35456027
Alignment:
| Q |
199 |
aaccagtcatcataacataccaaaaacttgcaaaaggggagaaccttagctcgaagaatatggtagctttgtg |
271 |
Q |
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| T |
35456099 |
aaccagtcttcataacataccaaaaacttgcataaggagataaccttagctagcagaatatggtagctttgtg |
35456027 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 39 - 86
Target Start/End: Complemental strand, 35456210 - 35456163
Alignment:
| Q |
39 |
catgcttcaaaacctgcacaatttacattcaactcacacaaccaactg |
86 |
Q |
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| T |
35456210 |
catgattcaaaacctgcacaatttacattcaattcacacaaccaactg |
35456163 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 40 - 78
Target Start/End: Complemental strand, 29082286 - 29082248
Alignment:
| Q |
40 |
atgcttcaaaacctgcacaatttacattcaactcacaca |
78 |
Q |
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| T |
29082286 |
atgcttcaaaacctgcacaatttacattcaactcacaca |
29082248 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 160 - 232
Target Start/End: Complemental strand, 29082173 - 29082101
Alignment:
| Q |
160 |
atcatctcccttgatcttgtaagcgaggaagagttagtcaaccagtcatcataacataccaaaaacttgcaaa |
232 |
Q |
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| T |
29082173 |
atcatctcccatgagcctgtaacagaggaagagttagtaaaccagtcttcctaagattccaaaaacttgcaaa |
29082101 |
T |
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