View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15026_high_5 (Length: 580)
Name: NF15026_high_5
Description: NF15026
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15026_high_5 |
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Alignment Details
Target: chr5 (Bit Score: 390; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 390; E-Value: 0
Query Start/End: Original strand, 1 - 565
Target Start/End: Original strand, 897270 - 897822
Alignment:
| Q |
1 |
aacactgttaccatgcgaacaaaagaacacgaattattaaaaatgaaacaaaagtctggttgtgaatccaaattccaatccaacaataagttatgtttca |
100 |
Q |
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| T |
897270 |
aacactgttaccatgcgaacaaaagaacacgaattattaaaaatgaaacaacagtctggttgtgaatc------------caacaataagttatgtttca |
897357 |
T |
|
| Q |
101 |
---------tgaaataaaataacaaaacaacgttcannnnnnnnnnnnnnnnnnnnaattttaatcaaaacaaaattcactgaacaaacactagtgtagc |
191 |
Q |
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| T |
897358 |
attttcaaatgaaataaaataacaaaacaacgttcaattattattattat------aattttaatcaaaacaaaattcactgaacaaacactagtgtagc |
897451 |
T |
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| Q |
192 |
agcagcagcaccaccaataggttcaggagtgttctcatcgtcacaagccttaggcacggtgacgatgagttcgccatcgacaaacacagcagtggcgagc |
291 |
Q |
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| || || ||||||||||||||||||||||||||||||||| |||| |||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
897452 |
accacca---ccaccaataggttcaggagtgttctcatcgtcaaaagctttaggcacagtgacgatgagttcgccatcgacaaacacagcagtggcgagc |
897548 |
T |
|
| Q |
292 |
tccggaacaacagattccggcaaacgaaacctccagatatcaggatgaagatcatccaaagaaaagtgaagtgagtgacttgcccttacaacaatcttag |
391 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
897549 |
tccggaacaacagattctggcaaacgaaacctccagatatcaggatgaagatcatccaaagaaaagtgaagtgagtgacttgcccttacaacaatcttag |
897648 |
T |
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| Q |
392 |
tgacacctggatggatatgaagcgtgtgagtctcgacatgtccgagtgatgagtctgtttccgccacaaatcggaaacaggtaggttcttcttctataga |
491 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
897649 |
tgacacctggatggatatgaagcgtgtgagtctccacatgtccgagtgatgagtctgtttccgccacaaatcggaaacaggtaggttcttcttctataga |
897748 |
T |
|
| Q |
492 |
cacgtcagcatccgaccgtaacggaagttggaggatcctgctgaacacgtgagggagacgtctaagtttgttgt |
565 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
897749 |
cacgtcagcatccgaccgtaacggaagttggaggatcctgctgaacacgtgagggagacgtctaagtttgttgt |
897822 |
T |
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