View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15026_high_9 (Length: 462)

Name: NF15026_high_9
Description: NF15026
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15026_high_9
NF15026_high_9
[»] chr4 (3 HSPs)
chr4 (11-389)||(37224261-37224639)
chr4 (385-462)||(37224667-37224744)
chr4 (384-451)||(22130069-22130139)
[»] chr8 (1 HSPs)
chr8 (385-460)||(21216112-21216190)
[»] chr3 (1 HSPs)
chr3 (385-460)||(1778670-1778747)
[»] chr5 (1 HSPs)
chr5 (403-460)||(9515794-9515851)
[»] scaffold0583 (1 HSPs)
scaffold0583 (403-459)||(2073-2129)
[»] chr6 (1 HSPs)
chr6 (385-460)||(24983458-24983536)
[»] chr1 (1 HSPs)
chr1 (412-460)||(34563119-34563167)


Alignment Details
Target: chr4 (Bit Score: 347; Significance: 0; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 11 - 389
Target Start/End: Original strand, 37224261 - 37224639
Alignment:
Q  11 cagagacaaggaccaagaaacagtttgaagtggaactgacattgatccacttgccattgtgaagaacttgaaggccactaactccattctggatgaggag 110  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37224261 cagagacgaggaccaagaaacagtttgaagtggaactgacattgatccacttgccattgtgaagaacttgaaggccactaactccattctggatgaggag 37224360  T
Q  111 gttcaagaggccatgatcggaatgtgggggcattcccattgcaagctcaggttgaggacaaggaggataaagatttgctgccaacatttgtaaaccagaa 210  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37224361 gttcaagaggccatgatcggaatgtgggggcattcccattgcaagatcaggttgaggacaaggaggataaagatttgctgccaacatttgtaaaccagaa 37224460  T
Q  211 tctagattcattgttttgtctatatagttgacttccaaacccaaactttctgatattcctttgagaagttctctacctaatttccatgtttttctgctgt 310  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37224461 tctagattcattgttttgtctatatagttgacttccaaacccaaactttctgatattcctttgagaagttctctacctaatttccatgtttttctgctgt 37224560  T
Q  311 actctgcggatgtttccctacaaccgcacnnnnnnnnggataatttagaatacaaaccatcatgtcctaatggttactc 389  Q
    |||||||||||||||||||||||||||||        ||||||||||||||||||||||||||||||||||||||||||    
T  37224561 actctgcggatgtttccctacaaccgcacaaaaaaaaggataatttagaatacaaaccatcatgtcctaatggttactc 37224639  T

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Target: chr4; HSP #2
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 385 - 462
Target Start/End: Original strand, 37224667 - 37224744
Alignment:
Q  385 tactccacttactacaattaaggatgtttttgtaaatgaaacttattttatcgttgaaatgaacacaactaatcatat 462  Q
    ||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  37224667 tactccacttactacaactaaggatggttttgtaaatgaaacttattttatcgttgaaataaacacaactaatcatat 37224744  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 384 - 451
Target Start/End: Original strand, 22130069 - 22130139
Alignment:
Q  384 ttactccacttactacaattaa---ggatgtttttgtaaatgaaacttattttatcgttgaaatgaacaca 451  Q
    |||||||||| |||||||||||   |||||||||||||||||| ||| ||| || | ||||||| ||||||    
T  22130069 ttactccactaactacaattaataaggatgtttttgtaaatgatactaattataccattgaaatcaacaca 22130139  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 385 - 460
Target Start/End: Complemental strand, 21216190 - 21216112
Alignment:
Q  385 tactccacttactacaattaa---ggatgtttttgtaaatgaaacttattttatcgttgaaatgaacacaactaatcat 460  Q
    ||||||||| |||||||||||   ||||||||| ||||||| |||| |||||| | ||||||| ||||||| |||||||    
T  21216190 tactccactaactacaattaataaggatgttttagtaaatgcaactaattttaccattgaaatcaacacaattaatcat 21216112  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 385 - 460
Target Start/End: Original strand, 1778670 - 1778747
Alignment:
Q  385 tactccacttactacaat--taaggatgtttttgtaaatgaaacttattttatcgttgaaatgaacacaactaatcat 460  Q
    ||||||||| ||||||||  |||||||||||| |||||||  | | |||||||| ||||||| ||||||| |||||||    
T  1778670 tactccactaactacaataataaggatgttttagtaaatgtcattaattttatcattgaaatcaacacaattaatcat 1778747  T

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Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 403 - 460
Target Start/End: Original strand, 9515794 - 9515851
Alignment:
Q  403 taaggatgtttttgtaaatgaaacttattttatcgttgaaatgaacacaactaatcat 460  Q
    |||||||||||| |||||||| ||| |||||| | ||||||| ||||||| |||||||    
T  9515794 taaggatgttttagtaaatgatactaattttaccattgaaatcaacacaattaatcat 9515851  T

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Target: scaffold0583 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0583
Description:

Target: scaffold0583; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 403 - 459
Target Start/End: Original strand, 2073 - 2129
Alignment:
Q  403 taaggatgtttttgtaaatgaaacttattttatcgttgaaatgaacacaactaatca 459  Q
    |||||||||||| |||||||| | | |||||||| ||||||| ||||||| ||||||    
T  2073 taaggatgttttagtaaatgatattaattttatcattgaaattaacacaattaatca 2129  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 385 - 460
Target Start/End: Complemental strand, 24983536 - 24983458
Alignment:
Q  385 tactccacttactacaattaa---ggatgtttttgtaaatgaaacttattttatcgttgaaatgaacacaactaatcat 460  Q
    ||||||||| |||||||||||   || |||||| |||||||| ||| |||||| | ||||||| ||| |||||||||||    
T  24983536 tactccactaactacaattaataagggtgttttagtaaatgacactaattttaccattgaaatcaactcaactaatcat 24983458  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 412 - 460
Target Start/End: Original strand, 34563119 - 34563167
Alignment:
Q  412 ttttgtaaatgaaacttattttatcgttgaaatgaacacaactaatcat 460  Q
    |||| ||||||||||| |||||||||||||||| |||| |||| |||||    
T  34563119 ttttataaatgaaactcattttatcgttgaaatcaacaaaactgatcat 34563167  T

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