View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15026_low_15 (Length: 384)
Name: NF15026_low_15
Description: NF15026
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15026_low_15 |
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Alignment Details
Target: chr1 (Bit Score: 253; Significance: 1e-140; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 107 - 363
Target Start/End: Complemental strand, 8432247 - 8431991
Alignment:
| Q |
107 |
ttatttagctttaagcacaggattcaactgaagaggcctaggtggagccattgttcttctcttccaaagattaatttcattccttggcttaaacttcaaa |
206 |
Q |
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| T |
8432247 |
ttatttagctttaagcacaggattcaactgaagaggcctaggtggagccattgttcttctcttccaaagattaatttcattccttggcttaaacttgaaa |
8432148 |
T |
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| Q |
207 |
tcagatgtaccagtagtatttccaccaacacctaaaataggtgcagaaaatggaatcaaaatttcatcatcctctccatcagtaaaacattccctttgat |
306 |
Q |
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| T |
8432147 |
tcagatgtaccagtagtatttccaccaacacctaaaataggtgcagaaaatggaatcaaaatttcatcatcctctccatcagtaaaacattccctttgat |
8432048 |
T |
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| Q |
307 |
caatttcttcaggctcaatcactgccttccaatcaaatttagaaaaagcctcacgtc |
363 |
Q |
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| T |
8432047 |
caatttcttcaggctcaatcactgccttccaatcaaatttagaaaaagcctcacgtc |
8431991 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 125 - 187
Target Start/End: Complemental strand, 14438909 - 14438847
Alignment:
| Q |
125 |
aggattcaactgaagaggcctaggtggagccattgttcttctcttccaaagattaatttcatt |
187 |
Q |
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| T |
14438909 |
aggattcaattaaagaggcctagatggtgctatagttcttctctttcaaagattaatttcatt |
14438847 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 138 - 184
Target Start/End: Complemental strand, 53579139 - 53579093
Alignment:
| Q |
138 |
agaggcctaggtggagccattgttcttctcttccaaagattaatttc |
184 |
Q |
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| T |
53579139 |
agaggcctaggtggagccatggtccttctcttccatagattaatttc |
53579093 |
T |
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