View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15026_low_16 (Length: 351)
Name: NF15026_low_16
Description: NF15026
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15026_low_16 |
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| [»] chr5 (6 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 326; Significance: 0; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 14 - 351
Target Start/End: Original strand, 3216861 - 3217198
Alignment:
| Q |
14 |
caacatcatcgaatggaagagataaatttgtgtctgtgacgaagttccttgctccaatgagcttcttgttacaaatcctttcccctgtgaattcacagtg |
113 |
Q |
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| T |
3216861 |
caacatcatcgaatggaagagataaatttgtgtctgtgacgaagttccttgctccaatgagcttcttgttacaaatcctttcccctgtgaattcacagtg |
3216960 |
T |
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| Q |
114 |
gccattccattttgcaggtggagagggcattccctcgtcagaaaaggaaggatgggagagggatattcctgtgtccaggattccaattatgatcccttta |
213 |
Q |
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| T |
3216961 |
gccattccattttgcaggtggagagggcattccctcgtcagaaaaggaaggatgggagagggatattcctgtgtccaggattccaattatgatcccttta |
3217060 |
T |
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| Q |
214 |
ccgagattggaatttatccataatccttgactctgttgcaaccccaagaagcttggtgtgtgagttgtatgtaatgaaaggatcttttctggtcgaattg |
313 |
Q |
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| T |
3217061 |
ccgagattggaatttatccataatccttgactctgttgcaaccccaagaagcttggtgtgtgagttgtatgtaatgagaggatgttttctggtcgaattg |
3217160 |
T |
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| Q |
314 |
atagaacctcctccttctcttctagagcctttgcttct |
351 |
Q |
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| T |
3217161 |
atagaacctcctccttctcttctagagccttggcttct |
3217198 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 52 - 351
Target Start/End: Original strand, 3202977 - 3203276
Alignment:
| Q |
52 |
acgaagttccttgctccaatgagcttcttgttacaaatcctttcccctgtgaattcacagtggccattccattttgcaggtggagagggcattccctcgt |
151 |
Q |
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| T |
3202977 |
acgatgttccttgctccaatgatcttcttgttacaaatcctctcccctgtgaattcacaatggccattccattttgcaggtggagaaggcattccctcat |
3203076 |
T |
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| Q |
152 |
cagaaaaggaaggatgggagagggatattcctgtgtccaggattccaattatgatccctttaccgagattggaatttatccataatccttgactctgttg |
251 |
Q |
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| T |
3203077 |
cggaaaaggaaggatgtgagagggttattcctgtgtccagcattccaattatgatccctttaccttgattggaatttccccacaattcttgattctgttg |
3203176 |
T |
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| Q |
252 |
caaccccaagaagcttggtgtgtgagttgtatgtaatgaaaggatcttttctggtcgaattgatagaacctcctccttctcttctagagcctttgcttct |
351 |
Q |
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| T |
3203177 |
caaccccaagaagcttggagtgtgagttgtgtgtaatgagaaaatcttttctggtcgaattgacagaacctcctcattctcttctagaaccttggcttct |
3203276 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 59 - 350
Target Start/End: Original strand, 3208958 - 3209249
Alignment:
| Q |
59 |
tccttgctccaatgagcttcttgttacaaatcctttcccctgtgaattcacagtggccattccattttgcaggtggagagggcattccctcgtcagaaaa |
158 |
Q |
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| T |
3208958 |
tccttgctccaatgatcttcttgttacaaatcctctcccctgtgaattcacaatggccattccattttgcaggtggtgaaggcatcccctcatcagaaaa |
3209057 |
T |
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| Q |
159 |
ggaaggatgggagagggatattcctgtgtccaggattccaattatgatccctttaccgagattggaatttatccataatccttgactctgttgcaacccc |
258 |
Q |
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| T |
3209058 |
ggaaggatgtgagagggttattcctgtgtcgacgattccaattatgatccctttaccttgattggaatttccccacaagtcttgattttgttgtaacccc |
3209157 |
T |
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| Q |
259 |
aagaagcttggtgtgtgagttgtatgtaatgaaaggatcttttctggtcgaattgatagaacctcctccttctcttctagagcctttgcttc |
350 |
Q |
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| T |
3209158 |
aagaagcttgaagtgtgagttgtgtgtaatgaatacattttctccagccgagttgatagaacctcctcattctcttctagagccttggcttc |
3209249 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 101 - 153
Target Start/End: Complemental strand, 3177934 - 3177882
Alignment:
| Q |
101 |
tgaattcacagtggccattccattttgcaggtggagagggcattccctcgtca |
153 |
Q |
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| T |
3177934 |
tgaattcacaatggcctttccattttgcaggtggcggcggcattccttcgtca |
3177882 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 100 - 152
Target Start/End: Original strand, 3232106 - 3232158
Alignment:
| Q |
100 |
gtgaattcacagtggccattccattttgcaggtggagagggcattccctcgtc |
152 |
Q |
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| T |
3232106 |
gtgaattcacaatggcctttccattttgcaggtggtggcggcattccttcgtc |
3232158 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 101 - 153
Target Start/End: Original strand, 3240906 - 3240958
Alignment:
| Q |
101 |
tgaattcacagtggccattccattttgcaggtggagagggcattccctcgtca |
153 |
Q |
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| T |
3240906 |
tgaattcacaatggcctttccattttgcaggtggcggcggcattccttcgtca |
3240958 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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