View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15026_low_19 (Length: 334)
Name: NF15026_low_19
Description: NF15026
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15026_low_19 |
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| [»] scaffold0018 (2 HSPs) |
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Alignment Details
Target: scaffold0018 (Bit Score: 267; Significance: 1e-149; HSPs: 2)
Name: scaffold0018
Description:
Target: scaffold0018; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 19 - 304
Target Start/End: Original strand, 142532 - 142820
Alignment:
| Q |
19 |
tgttaaatatgatagagagtggagaaacagaagaactagaaaaagatatgttgaatgagattgagaatgaaagcaaagccaattgttcttctttagagag |
118 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
142532 |
tgttgaatatgatagagagtggagaaacagaagaactagaaaaagatatgttgaatgagattgagaatgaaagcaaagccaattgttcttctttagagag |
142631 |
T |
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| Q |
119 |
aaaggggaaaaataattcatccataggcctttcgcctttccttggtctattttcgatctgttcgacttttgctattcttgctttatcatatcacgtgatt |
218 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
142632 |
aaagggaaaaaataattcatccataggcctttcgcctttccttggtctattttcgatctgttcgacttttgctattcttgctttatcatatcacgtgatt |
142731 |
T |
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| Q |
219 |
tgtttgt---tgaaaaatgtagagaccttaaagaattacacaatattaacattaaaacagttatggagaatatggagatggacaaccaa |
304 |
Q |
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| T |
142732 |
tgtttgttggtgaaaaatgtagagaccttaaagaattacacaatattaacattaaaacagttatggagaatatggagatggacaaccaa |
142820 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0018; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 22 - 304
Target Start/End: Original strand, 150476 - 150764
Alignment:
| Q |
22 |
taaatatgatagagagtggagaaacagaagaactagaaaaagatatgttgaatgagattgagaatgaaagcaaagccaattgttcttctttagagagaaa |
121 |
Q |
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|||||||||||||||||||| |||||||| ||||||||||||| |||||||||| ||| | || | | ||||| ||||||||||||||||||| ||||| |
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| T |
150476 |
taaatatgatagagagtggaaaaacagaaaaactagaaaaagacatgttgaatgggatagggagaggaggcaaaaccaattgttcttctttagaaagaaa |
150575 |
T |
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| Q |
122 |
---ggggaaaaataattcatccataggcctttcgcctttccttggtctattttcgatctgttcgacttttgctattcttgctttatcatatcacgtgatt |
218 |
Q |
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| T |
150576 |
caaggggaaaaataattcctcgataggtcttccgcctttcattggcttgttttcgatctgctctactttttctattcttgcattgtcatatcacattatc |
150675 |
T |
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| Q |
219 |
tgtttgt---tgaaaaatgtagagaccttaaagaattacacaatattaacattaaaacagttatggagaatatggagatggacaaccaa |
304 |
Q |
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| T |
150676 |
tgtttgttggtgaagaatatagagaccttggcaagccacataatagtaatattgacacaattatggagaatatggagatggataaccaa |
150764 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 116; Significance: 6e-59; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 24 - 226
Target Start/End: Original strand, 24899587 - 24899792
Alignment:
| Q |
24 |
aatatgatagagagtggagaaacagaagaactagaaaaagatatgttgaatgagattgagaatgaaagcaaagccaattgttcttctttagagagaaa-- |
121 |
Q |
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|||||||||||||| ||||||||| || | || |||||| |||||||||| ||||| |||| ||||||||||| |||||||||||||| |||||| || |
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| T |
24899587 |
aatatgatagagagcggagaaacataacagctcgaaaaaaatatgttgaacgagatagagagtgaaagcaaagtcaattgttcttcttcagagagcaaca |
24899686 |
T |
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| Q |
122 |
-ggggaaaaataattcatccataggcctttcgcctttccttggtctattttcgatctgttcgacttttgctattcttgctttatcatatcacgtgatttg |
220 |
Q |
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| T |
24899687 |
aggggaaagataattcatcgataggccttccgcctttccttggtctgttttcgatctgttctacttttgctattcttgctttgtcatatcacatgatttg |
24899786 |
T |
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| Q |
221 |
tttgtt |
226 |
Q |
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|||||| |
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| T |
24899787 |
tttgtt |
24899792 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 24 - 226
Target Start/End: Original strand, 24911833 - 24912038
Alignment:
| Q |
24 |
aatatgatagagagtggagaaacagaagaactagaaaaagatatgttgaatgagattgagaatgaaagcaaagccaattgttcttctttagagag---aa |
120 |
Q |
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|||||||||||||| |||||||||||| | || |||||| |||||||||| ||||| |||| ||||||||||||||||||||||||||||||||| | |
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| T |
24911833 |
aatatgatagagagcggagaaacagaacagctcgaaaaaaatatgttgaacgagatagagagtgaaagcaaagccaattgttcttctttagagagcaaca |
24911932 |
T |
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| Q |
121 |
aggggaaaaataattcatccataggcctttcgcctttccttggtctattttcgatctgttcgacttttgctattcttgctttatcatatcacgtgatttg |
220 |
Q |
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||||||||||||||||||| ||||||||| ||||||||||||||| ||||| |||||||| | ||||||| ||||||| || ||||||||| ||||||| |
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| T |
24911933 |
aggggaaaaataattcatctataggccttcagcctttccttggtctgttttcaatctgttctatttttgctgttcttgcattgtcatatcacatgatttg |
24912032 |
T |
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| Q |
221 |
tttgtt |
226 |
Q |
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|||||| |
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| T |
24912033 |
tttgtt |
24912038 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 28 - 222
Target Start/End: Original strand, 24988519 - 24988716
Alignment:
| Q |
28 |
tgatagagagtggagaaacagaagaactagaaaaagatatgttgaatgagattgagaatgaaagcaaagccaattgttcttctttagagag---aaaggg |
124 |
Q |
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|||||||||| |||||||||||| | || |||||| |||||||||| ||||| |||| ||||||||||||||||||||||||||||||||| ||||| |
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| T |
24988519 |
tgatagagagcggagaaacagaacagctcgaaaaaaatatgttgaacgagatagagagtgaaagcaaagccaattgttcttctttagagagcaacaaggg |
24988618 |
T |
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| Q |
125 |
gaaaaataattcatccataggcctttcgcctttccttggtctattttcgatctgttcgacttttgctattcttgctttatcatatcacgtgatttgtt |
222 |
Q |
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||||||||||||||| ||||||||| ||||||||||| ||| ||||| |||||||| ||||||||||||||| || ||||||||| ||||||||| |
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| T |
24988619 |
gaaaaataattcatcgataggccttcagcctttccttgctctgttttcaatctgttctttttttgctattcttgcgttgtcatatcacatgatttgtt |
24988716 |
T |
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