View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15026_low_22 (Length: 284)

Name: NF15026_low_22
Description: NF15026
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15026_low_22
NF15026_low_22
[»] chr7 (4 HSPs)
chr7 (171-269)||(22526372-22526470)
chr7 (19-94)||(22525249-22525324)
chr7 (100-151)||(22533584-22533635)
chr7 (19-74)||(22534561-22534616)
[»] chr5 (1 HSPs)
chr5 (180-220)||(19754273-19754314)


Alignment Details
Target: chr7 (Bit Score: 95; Significance: 2e-46; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 171 - 269
Target Start/End: Original strand, 22526372 - 22526470
Alignment:
Q  171 gagcattacagttgaagagaatggctaaaaattcaaaggaaagcaataaaaactgaaattcctaaatcttaaactcagctatgagcttgttgagatttg 269  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22526372 gagcattacagttgaagagaatggctaaaaattcaaagggaagcaataaaaactgaaattcctaaatcttaaactcagctatgagcttgttgagatttg 22526470  T

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Target: chr7; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 19 - 94
Target Start/End: Original strand, 22525249 - 22525324
Alignment:
Q  19 tttatatcatgataaaaacaaagtaagcccttcaagacacaaacatgttctggtactggtgtaattgacaacttct 94  Q
    ||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||  |||||||| |||||    
T  22525249 tttatgtcatgataaaaacaaaggaagcccttcaagacacaaacatgttctggtactggtacaattgacagcttct 22525324  T

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Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 100 - 151
Target Start/End: Complemental strand, 22533635 - 22533584
Alignment:
Q  100 aaagatttatcatttatattacgattttaatataaaaagtcaaacgaacatt 151  Q
    ||||||||||| ||| |||||||||||||||| |||||||||||||||||||    
T  22533635 aaagatttatcgtttgtattacgattttaatacaaaaagtcaaacgaacatt 22533584  T

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Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 19 - 74
Target Start/End: Complemental strand, 22534616 - 22534561
Alignment:
Q  19 tttatatcatgataaaaacaaagtaagcccttcaagacacaaacatgttctggtac 74  Q
    ||||| ||||||||||||||||| | |||||||| ||||||||||||||| |||||    
T  22534616 tttatgtcatgataaaaacaaaggacgcccttcaggacacaaacatgttccggtac 22534561  T

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Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 180 - 220
Target Start/End: Original strand, 19754273 - 19754314
Alignment:
Q  180 agttgaagagaatggct-aaaaattcaaaggaaagcaataaa 220  Q
    ||||||||||||||||| ||||||||| ||||||||||||||    
T  19754273 agttgaagagaatggcttaaaaattcagaggaaagcaataaa 19754314  T

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