View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15026_low_26 (Length: 243)
Name: NF15026_low_26
Description: NF15026
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15026_low_26 |
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| [»] chr4 (3 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 95; Significance: 1e-46; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 149 - 243
Target Start/End: Complemental strand, 27413749 - 27413655
Alignment:
| Q |
149 |
caaatgttgagtgtcaagaggttggtccacttggtaagaagttgacacattccccacaatgacatgtgatcgactccttctggcgttgcaaagac |
243 |
Q |
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| T |
27413749 |
caaatgttgagtgtcaagaggttggtccacttggtaagaagttgacacattccccacaatgacatgtgatcgactccttctggcgttgcaaagac |
27413655 |
T |
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Target: chr4; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 17 - 89
Target Start/End: Complemental strand, 27413881 - 27413809
Alignment:
| Q |
17 |
caactgttctgttcttgactgtattggaaaggccgcagtaaattacttgtgtttcaaggttactagaataata |
89 |
Q |
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| T |
27413881 |
caactgttctgttcttgactgtattggaaaggccgcagtaaattacttgtgtttcaaggttactagaataata |
27413809 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 38 - 85
Target Start/End: Complemental strand, 27424075 - 27424028
Alignment:
| Q |
38 |
tattggaaaggccgcagtaaattacttgtgtttcaaggttactagaat |
85 |
Q |
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| T |
27424075 |
tattggaaaggctgcaataaattacttgtgtgtcaaggttactagaat |
27424028 |
T |
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