View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15026_low_27 (Length: 238)
Name: NF15026_low_27
Description: NF15026
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15026_low_27 |
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Alignment Details
Target: chr4 (Bit Score: 191; Significance: 1e-104; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 49351551 - 49351328
Alignment:
| Q |
1 |
aagacacgcttaatctgtttcagccattcacgtagctcattgttctgccattgcttttgttcagcgtccaacaacacggctttgacaagtgagacagnnn |
100 |
Q |
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||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49351551 |
aagacgcgcttaatctgtttcaaccattcacgtagctcattgttctgccattgcttttgttcagcgtccaacaacacggctttgacaagtgagacagttt |
49351452 |
T |
|
| Q |
101 |
nnnngatttcttgaagatccttgtagacgccgagggatagagaagcttcttgaacagcaacggatgcaagttttccaatgaatgactctgccacgccaaa |
200 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49351451 |
ttttgatttcttgaagatccttgtagacgctgagggatagagaagcttcttgaacagcaacggatgcaagttttccaatgaatgactctgccacgccaaa |
49351352 |
T |
|
| Q |
201 |
gaggagtgattctgccatgttgat |
224 |
Q |
| |
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|||||||||||||||||||||||| |
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| T |
49351351 |
gaggagtgattctgccatgttgat |
49351328 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 4 - 224
Target Start/End: Complemental strand, 49340184 - 49339959
Alignment:
| Q |
4 |
acacgcttaatctgtttcagccattcacgtagctcattgttctgccattgcttttgttcagcgtccaacaacacggctttgacaagtgagacagnnnnnn |
103 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| || || |||||||||||||| ||||||||| |
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| T |
49340184 |
acacggttaatctgtttcagccattcacgtagctcattgttctgccattgcttttgttcagcatctaataacacggctttgacgagtgagacaatgtttt |
49340085 |
T |
|
| Q |
104 |
ngatttcttgaagatccttgtagac-----gccgagggatagagaagcttcttgaacagcaacggatgcaagttttccaatgaatgactctgccacgcca |
198 |
Q |
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||||||| |||||| | ||||| ||| || | |||||||||||| | |||||||| || ||||| || | ||||||||||||||| || || |
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| T |
49340084 |
ttatttcttaaagatcgtcatagacacccagcccagcgctagagaagcttcattgacagcaacagaagcaagcttactaatgaatgactctgcaactccg |
49339985 |
T |
|
| Q |
199 |
aagaggagtgattctgccatgttgat |
224 |
Q |
| |
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||||| |||||||| ||||||||||| |
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| T |
49339984 |
aagagtagtgattccgccatgttgat |
49339959 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 133; Significance: 3e-69; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 1 - 218
Target Start/End: Original strand, 32784724 - 32784941
Alignment:
| Q |
1 |
aagacacgcttaatctgtttcagccattcacgtagctcattgttctgccattgcttttgttcagcgtccaacaacacggctttgacaagtgagacagnnn |
100 |
Q |
| |
|
||||| |||||||||||||||| ||||||||| ||||||| ||||||||||||| |||||||||||||||||||||||||||||| |||||||||| |
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| T |
32784724 |
aagacccgcttaatctgtttcaaccattcacgcagctcatggttctgccattgcgtttgttcagcgtccaacaacacggctttgatgagtgagacagtgt |
32784823 |
T |
|
| Q |
101 |
nnnngatttcttgaagatccttgtagacgccgagggatagagaagcttcttgaacagcaacggatgcaagttttccaatgaatgactctgccacgccaaa |
200 |
Q |
| |
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|||||||||||||| | |||||| ||||| | ||||||||||| || |||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
32784824 |
ttttgatttcttgaagattgtcgtagacaccgagcgttagagaagctttttcaacagcaacggatgcaagtttttcaatgaatgactctgccacgccaaa |
32784923 |
T |
|
| Q |
201 |
gaggagtgattctgccat |
218 |
Q |
| |
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|||||||||||||||||| |
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| T |
32784924 |
gaggagtgattctgccat |
32784941 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 119; Significance: 6e-61; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 13441552 - 13441775
Alignment:
| Q |
1 |
aagacacgcttaatctgtttcagccattcacgtagctcattgttctgccattgcttttgttcagcgtccaacaacacggctttgacaagtgagacagnnn |
100 |
Q |
| |
|
||||| ||||||||||||||||||||||||| ||| |||||||||||||||||| |||||||||||||||||||||| |||||||| |||||||||| |
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| T |
13441552 |
aagacccgcttaatctgtttcagccattcacctagttcattgttctgccattgcctttgttcagcgtccaacaacactgctttgacgagtgagacagtgt |
13441651 |
T |
|
| Q |
101 |
nnnngatttcttgaagatccttgtagacgccgagggatagagaagcttcttgaacagcaacggatgcaagttttccaatgaatgactctgccacgccaaa |
200 |
Q |
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|||||||||||| | | |||||| || | | ||||||||||| | |||||||| ||||||||||||| ||||||||||||||||| ||||||| |
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| T |
13441652 |
tttttatttcttgaagaacgtcgtagacaccaaacgctagagaagctttatcaacagcaatggatgcaagtttttcaatgaatgactctgccgcgccaaa |
13441751 |
T |
|
| Q |
201 |
gaggagtgattctgccatgttgat |
224 |
Q |
| |
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|||||||||||||||||||||||| |
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| T |
13441752 |
gaggagtgattctgccatgttgat |
13441775 |
T |
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