View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15026_low_3 (Length: 663)

Name: NF15026_low_3
Description: NF15026
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15026_low_3
NF15026_low_3
[»] chr6 (18 HSPs)
chr6 (203-642)||(22995748-22996187)
chr6 (203-642)||(23792213-23792652)
chr6 (452-642)||(18141412-18141602)
chr6 (15-108)||(22996378-22996471)
chr6 (15-108)||(23791930-23792023)
chr6 (452-570)||(29396474-29396592)
chr6 (18-108)||(18141792-18141883)
chr6 (441-574)||(7045132-7045265)
chr6 (340-439)||(18141090-18141188)
chr6 (452-527)||(22957009-22957084)
chr6 (452-527)||(23831308-23831383)
chr6 (452-566)||(21203236-21203356)
chr6 (452-574)||(6266427-6266549)
chr6 (203-250)||(18140958-18141005)
chr6 (122-165)||(22996283-22996326)
chr6 (122-165)||(23792074-23792117)
chr6 (441-478)||(33423751-33423788)
chr6 (122-165)||(18141698-18141741)
[»] chr4 (6 HSPs)
chr4 (441-577)||(33152450-33152586)
chr4 (454-574)||(3684763-3684883)
chr4 (493-574)||(2728612-2728693)
chr4 (452-576)||(12842308-12842433)
chr4 (454-570)||(45283085-45283201)
chr4 (536-568)||(40262471-40262503)
[»] chr5 (5 HSPs)
chr5 (452-574)||(900915-901037)
chr5 (452-575)||(15434442-15434565)
chr5 (452-576)||(2250356-2250480)
chr5 (474-574)||(30839962-30840062)
chr5 (452-518)||(8317378-8317444)
[»] chr3 (6 HSPs)
chr3 (452-574)||(26847677-26847799)
chr3 (452-571)||(40034757-40034876)
chr3 (493-569)||(8913926-8914002)
chr3 (517-574)||(30074962-30075019)
chr3 (452-561)||(2043761-2043872)
chr3 (530-571)||(30796685-30796726)
[»] chr2 (2 HSPs)
chr2 (452-574)||(33538205-33538327)
chr2 (452-549)||(24441980-24442077)
[»] chr7 (3 HSPs)
chr7 (452-574)||(38174650-38174772)
chr7 (452-574)||(6494773-6494895)
chr7 (452-574)||(45849428-45849551)
[»] chr1 (3 HSPs)
chr1 (452-571)||(9388590-9388709)
chr1 (452-552)||(10366595-10366695)
chr1 (452-568)||(26028976-26029092)
[»] chr8 (5 HSPs)
chr8 (452-514)||(37819869-37819931)
chr8 (447-575)||(43899032-43899161)
chr8 (474-568)||(28321017-28321110)
chr8 (540-576)||(24512335-24512371)
chr8 (540-575)||(37819136-37819171)


Alignment Details
Target: chr6 (Bit Score: 184; Significance: 3e-99; HSPs: 18)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 184; E-Value: 3e-99
Query Start/End: Original strand, 203 - 642
Target Start/End: Original strand, 22995748 - 22996187
Alignment:
Q  203 ttgtacttggtagtccatgtaagatttttcattagcattcatagggacnnnnnnncccgattaaaattattatttgtagggattaaaatgttgatgaann 302  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||| |||||| ||||||||||||||      
T  22995748 ttgtacttggtagtccatgtaagatttttcattagcattcatagggacaaaaaaacccgattaaaattattatttgcagggatcaaaatgttgatgaatt 22995847  T
Q  303 nnnnnnacaaggtctaaaaatactgataa-nnnnnnnncctttaacatcaattttatgaaggatttgatgtaatacaagtgtgtctcctcatagtaataa 401  Q
          | |||| ||||||||||||||||         |||||||||||||||||| |||||||||| |||||||||||||| ||||||||| |||||||    
T  22995848 ttttttaaaaggactaaaaatactgataatttttttttcctttaacatcaattttacgaaggatttgttgtaatacaagtgtctctcctcatggtaataa 22995947  T
Q  402 atagttatcgttttatctcatttccatattatatgatatatga------tatgtgaacaaccaacaacttatttgctatttttaataatattttatctga 495  Q
    |||||||| ||||||||| |||| |||||||| |||||| |||       |  || | |||||||||||  |||||||||||||||||||||||  ||||    
T  22995948 atagttattgttttatcttatttgcatattatttgatatgtgaacaaccaaattgtataaccaacaact--tttgctatttttaataatattttgcctga 22996045  T
Q  496 ttttgatttctatgctcctcacaaaattaaaggttattgaattagttgtccaattttaaatgtacaaataacatagctcatatgatattgatgtatggta 595  Q
    ||| ||||| | ||||||||||||| ||||||||| ||  ||| |||||||||||||| ||||||||||||||||||     || ||||||||||||||     
T  22996046 tttcgatttatgtgctcctcacaaagttaaaggttgttacattggttgtccaattttagatgtacaaataacatagc-----tggtattgatgtatggtg 22996140  T
Q  596 tatgatggttcggtgtatattgaaacatcatgtatgcaacaaagtag 642  Q
    ||| |||||||||||||||||||||||||||| ||||||||||||||    
T  22996141 tataatggttcggtgtatattgaaacatcatgcatgcaacaaagtag 22996187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 184; E-Value: 3e-99
Query Start/End: Original strand, 203 - 642
Target Start/End: Complemental strand, 23792652 - 23792213
Alignment:
Q  203 ttgtacttggtagtccatgtaagatttttcattagcattcatagggacnnnnnnncccgattaaaattattatttgtagggattaaaatgttgatgaann 302  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||| |||||| ||||||||||||||      
T  23792652 ttgtacttggtagtccatgtaagatttttcattagcattcatagggacaaaaaaacccgattaaaattattatttgcagggatcaaaatgttgatgaatt 23792553  T
Q  303 nnnnnnacaaggtctaaaaatactgataannnnnnnn-cctttaacatcaattttatgaaggatttgatgtaatacaagtgtgtctcctcatagtaataa 401  Q
          | |||| ||||||||||||||||         |||||||||||||||||| |||||||||| |||||||||||||| ||||||||| |||||||    
T  23792552 ttttttaaaaggactaaaaatactgataatttttttttcctttaacatcaattttacgaaggatttgttgtaatacaagtgtctctcctcatggtaataa 23792453  T
Q  402 atagttatcgttttatctcatttccatattatatgatatatga------tatgtgaacaaccaacaacttatttgctatttttaataatattttatctga 495  Q
    |||||||| ||||||||| |||| |||||||| |||||| |||       |  || | |||||||||||  |||||||||||||||||||||||  ||||    
T  23792452 atagttattgttttatcttatttgcatattatttgatatgtgaacaaccaaattgtataaccaacaact--tttgctatttttaataatattttgcctga 23792355  T
Q  496 ttttgatttctatgctcctcacaaaattaaaggttattgaattagttgtccaattttaaatgtacaaataacatagctcatatgatattgatgtatggta 595  Q
    ||| ||||| | ||||||||||||| ||||||||| ||  ||| |||||||||||||| ||||||||||||||||||     || ||||||||||||||     
T  23792354 tttcgatttatgtgctcctcacaaagttaaaggttgttacattggttgtccaattttagatgtacaaataacatagc-----tggtattgatgtatggtg 23792260  T
Q  596 tatgatggttcggtgtatattgaaacatcatgtatgcaacaaagtag 642  Q
    ||| |||||||||||||||||||||||||||| ||||||||||||||    
T  23792259 tataatggttcggtgtatattgaaacatcatgcatgcaacaaagtag 23792213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 123; E-Value: 8e-63
Query Start/End: Original strand, 452 - 642
Target Start/End: Original strand, 18141412 - 18141602
Alignment:
Q  452 acaaccaacaacttatttgctatttttaataatattttatctgattttgatttctatgctcctcacaaaattaaaggttattgaattagttgtccaattt 551  Q
    ||||||| |||||||||| ||||||||||||||||||||  |||||| ||||| | | ||||||||||| ||||||||| ||| ||| ||||||||||||    
T  18141412 acaaccagcaacttattttctatttttaataatattttacttgatttcgatttatgtactcctcacaaagttaaaggttgttgtattggttgtccaattt 18141511  T
Q  552 taaatgtacaaataacatagctcatatgatattgatgtatggtatatgatggttcggtgtatattgaaacatcatgtatgcaacaaagtag 642  Q
    ||||||||||||||||||| |||||||| |||||||||||||| |||| ||||||||||||||||||||||||||| ||||||||||||||    
T  18141512 taaatgtacaaataacataactcatatggtattgatgtatggtgtatggtggttcggtgtatattgaaacatcatgcatgcaacaaagtag 18141602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 90; E-Value: 4e-43
Query Start/End: Original strand, 15 - 108
Target Start/End: Complemental strand, 22996471 - 22996378
Alignment:
Q  15 atcttttccactactcaacattgtcgccactctggaatgcaaaatcccttaatattaatcagttaaattagttaatagtgtgaaaaaatagaat 108  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22996471 atcttttccactactcaacattgtcgctactctggaatgcaaaatcccttaatattaatcagttaaattagttaatagtgtgaaaaaatagaat 22996378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 90; E-Value: 4e-43
Query Start/End: Original strand, 15 - 108
Target Start/End: Original strand, 23791930 - 23792023
Alignment:
Q  15 atcttttccactactcaacattgtcgccactctggaatgcaaaatcccttaatattaatcagttaaattagttaatagtgtgaaaaaatagaat 108  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23791930 atcttttccactactcaacattgtcgctactctggaatgcaaaatcccttaatattaatcagttaaattagttaatagtgtgaaaaaatagaat 23792023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 71; E-Value: 8e-32
Query Start/End: Original strand, 452 - 570
Target Start/End: Original strand, 29396474 - 29396592
Alignment:
Q  452 acaaccaacaacttatttgctatttttaataatattttatctgattttgatttctatgctcctcacaaaattaaaggttattgaattagttgtccaattt 551  Q
    |||||||||||||||||||||||||||||| |||||||   |||||| ||||| | ||||||||||||| ||||||||| ||| ||| ||||||||||||    
T  29396474 acaaccaacaacttatttgctatttttaatgatattttgattgatttcgatttttgtgctcctcacaaagttaaaggttgttgcattggttgtccaattt 29396573  T
Q  552 taaatgtacaaataacata 570  Q
    || ||||||||||||||||    
T  29396574 tagatgtacaaataacata 29396592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 18 - 108
Target Start/End: Complemental strand, 18141883 - 18141792
Alignment:
Q  18 ttttccactactcaacattgtcgccactctggaatgcaaaatcccttaata-ttaatcagttaaattagttaatagtgtgaaaaaatagaat 108  Q
    ||||||||||||||||||||||||||||| ||||||||||||| ||||||| |||||||||||||||  |||||||||||||||||||||||    
T  18141883 ttttccactactcaacattgtcgccactccggaatgcaaaatctcttaatatttaatcagttaaatttattaatagtgtgaaaaaatagaat 18141792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 441 - 574
Target Start/End: Complemental strand, 7045265 - 7045132
Alignment:
Q  441 atgatatgtgaacaaccaacaacttatttgctatttttaataatattttatctgattttgatttctatgctcctcacaaaattaaaggttattgaattag 540  Q
    |||||||||||||||||||||| | |||| ||||||||||  ||||||| | ||| |||||||||| ||||||||||||| ||| | ||| ||| ||| |    
T  7045265 atgatatgtgaacaaccaacaattcatttactatttttaaatatattttgtttgaatttgatttctgtgctcctcacaaacttataagttgttgcattgg 7045166  T
Q  541 ttgtccaattttaaatgtacaaataacatagctc 574  Q
    ||||| |||||||  |||||| ||||||||||||    
T  7045165 ttgtcaaattttagttgtacacataacatagctc 7045132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 340 - 439
Target Start/End: Original strand, 18141090 - 18141188
Alignment:
Q  340 cctttaacatcaattttatgaaggatttgatgtaatacaagtgtgtctcctcatagtaataaatagttatcgttttatctcatttccatattatatgata 439  Q
    ||||| ||||||||||||||||||||||| ||| |||||||||| ||||||||| |||| |||||||| | ||||||||| |||| ||||||||||||||    
T  18141090 ccttttacatcaattttatgaaggatttgttgttatacaagtgtctctcctcatggtaaaaaatagtt-ttgttttatcttatttgcatattatatgata 18141188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 452 - 527
Target Start/End: Original strand, 22957009 - 22957084
Alignment:
Q  452 acaaccaacaacttatttgctatttttaataatattttatctgattttgatttctatgctcctcacaaaattaaag 527  Q
    ||||||||||||||| |||||||||||||||||||||||  |||||| ||||| | ||||||||||||||||||||    
T  22957009 acaaccaacaacttacttgctatttttaataatattttacttgatttcgatttatgtgctcctcacaaaattaaag 22957084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 452 - 527
Target Start/End: Complemental strand, 23831383 - 23831308
Alignment:
Q  452 acaaccaacaacttatttgctatttttaataatattttatctgattttgatttctatgctcctcacaaaattaaag 527  Q
    ||||||||||||||| |||||||||||||||||||||||  |||||| ||||| | ||||||||||||||||||||    
T  23831383 acaaccaacaacttacttgctatttttaataatattttacttgatttcgatttatgtgctcctcacaaaattaaag 23831308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 452 - 566
Target Start/End: Complemental strand, 21203356 - 21203236
Alignment:
Q  452 acaaccaacaacttatttgctatttttaataatattttatctgattttgatttctatgctcctcac------aaaattaaaggttattgaattagttgtc 545  Q
    |||| |||||||||| ||| ||||||||||||| ||||   ||||||||||||||||| |||| ||      ||| ||||||||| ||| ||| ||||||    
T  21203356 acaatcaacaacttacttgatatttttaataatgttttgcttgattttgatttctatgatccttacaaagttaaagttaaaggttgttgcattggttgtc 21203257  T
Q  546 caattttaaatgtacaaataa 566  Q
    |||||||||||||||||||||    
T  21203256 caattttaaatgtacaaataa 21203236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 452 - 574
Target Start/End: Complemental strand, 6266549 - 6266427
Alignment:
Q  452 acaaccaacaacttatttgctattttt-aataatattttatctgattttgatttctatgctcctcacaaaattaaaggttattgaattagttgtccaatt 550  Q
    |||||||||||||  |||||||||||| |||| | |||||  |||||| |||||   |||||||||||| |||||||||| ||| || |||||| |||||    
T  6266549 acaaccaacaactattttgctattttttaatatttttttag-tgatttcgatttgcgtgctcctcacaatattaaaggttgttgtataagttgttcaatt 6266451  T
Q  551 ttaaatgtacaaataacatagctc 574  Q
    |||  |||||||||||||| ||||    
T  6266450 ttagttgtacaaataacattgctc 6266427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 203 - 250
Target Start/End: Original strand, 18140958 - 18141005
Alignment:
Q  203 ttgtacttggtagtccatgtaagatttttcattagcattcatagggac 250  Q
    |||||||| |||||||||||| |||||||||||||||||| |||||||    
T  18140958 ttgtactttgtagtccatgtatgatttttcattagcattcttagggac 18141005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 122 - 165
Target Start/End: Complemental strand, 22996326 - 22996283
Alignment:
Q  122 ttttttatgggtgttattttatgagggacgtttaagcttcaaag 165  Q
    |||||||||||||||||||||  |||||||||||||||||||||    
T  22996326 ttttttatgggtgttattttacaagggacgtttaagcttcaaag 22996283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 122 - 165
Target Start/End: Original strand, 23792074 - 23792117
Alignment:
Q  122 ttttttatgggtgttattttatgagggacgtttaagcttcaaag 165  Q
    |||||||||||||||||||||  |||||||||||||||||||||    
T  23792074 ttttttatgggtgttattttacaagggacgtttaagcttcaaag 23792117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 441 - 478
Target Start/End: Complemental strand, 33423788 - 33423751
Alignment:
Q  441 atgatatgtgaacaaccaacaacttatttgctattttt 478  Q
    |||||||||||||||||||||||||| |||||||||||    
T  33423788 atgatatgtgaacaaccaacaacttaattgctattttt 33423751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 122 - 165
Target Start/End: Complemental strand, 18141741 - 18141698
Alignment:
Q  122 ttttttatgggtgttattttatgagggacgtttaagcttcaaag 165  Q
    |||| |||||||||||||||| |||| |||||||||||||||||    
T  18141741 ttttctatgggtgttattttacgaggaacgtttaagcttcaaag 18141698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 93; Significance: 6e-45; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 93; E-Value: 6e-45
Query Start/End: Original strand, 441 - 577
Target Start/End: Complemental strand, 33152586 - 33152450
Alignment:
Q  441 atgatatgtgaacaaccaacaacttatttgctatttttaataatattttatctgattttgatttctatgctcctcacaaaattaaaggttattgaattag 540  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||   |||||||||||||  ||||||||||||||||||| ||| ||| ||| |    
T  33152586 atgatatgtgaacaaccaacaacttatttgctatttttaatgatattttgcatgattttgatttccgtgctcctcacaaaattaaaagttgttgcattgg 33152487  T
Q  541 ttgtccaattttaaatgtacaaataacatagctcata 577  Q
    ||||||||||||| |||||||||||||||||||||||    
T  33152486 ttgtccaattttagatgtacaaataacatagctcata 33152450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 454 - 574
Target Start/End: Original strand, 3684763 - 3684883
Alignment:
Q  454 aaccaacaacttatttgctatttttaataatattttatctgattttgatttctatgctcctcacaaaattaaaggttattgaattagttgtccaatttta 553  Q
    |||||||||  ||||||||||||||||||||||||| |||||||| ||||| | ||||||||||||| ||||||||| ||| |||  || ||||||||||    
T  3684763 aaccaacaatatatttgctatttttaataatattttgtctgatttcgatttttgtgctcctcacaaagttaaaggttgttgcattgattatccaatttta 3684862  T
Q  554 aatgtacaaataacatagctc 574  Q
     ||||||| ||||||||||||    
T  3684863 gatgtacatataacatagctc 3684883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 493 - 574
Target Start/End: Original strand, 2728612 - 2728693
Alignment:
Q  493 tgattttgatttctatgctcctcacaaaattaaaggttattgaattagttgtccaattttaaatgtacaaataacatagctc 574  Q
    |||||| ||||| | ||||||||||||| ||||||||| ||| ||| |||||||||||||||||||||||||||||||||||    
T  2728612 tgatttcgatttatgtgctcctcacaaagttaaaggttgttgcattggttgtccaattttaaatgtacaaataacatagctc 2728693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 452 - 576
Target Start/End: Original strand, 12842308 - 12842433
Alignment:
Q  452 acaaccaacaacttatttgctattttt-aataatattttatctgattttgatttctatgctcctcacaaaattaaaggttattgaattagttgtccaatt 550  Q
    |||||||||||||| |||||||||||| |||| | ||||   ||||||||||||  ||| ||||||||| |||||||||| ||| |||||||||  ||||    
T  12842308 acaaccaacaacttctttgctattttttaatattttttttagtgattttgatttgcatgttcctcacaatattaaaggttgttgtattagttgttgaatt 12842407  T
Q  551 ttaaatgtacaaataacatagctcat 576  Q
    ||   |||||||||||||| ||||||    
T  12842408 ttggttgtacaaataacattgctcat 12842433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 454 - 570
Target Start/End: Complemental strand, 45283201 - 45283085
Alignment:
Q  454 aaccaacaacttatttgctattttt-aataatattttatctgattttgatttctatgctcctcacaaaattaaaggttattgaattagttgtccaatttt 552  Q
    ||||| |||||||||| |||||||| |||| | |||||| |||||| |||||  || |||||||||   ||| | | ||||| ||||||| |||||||||    
T  45283201 aaccagcaacttattttctattttttaatatttttttat-tgatttcgatttgcatactcctcacattgttatatggtattgcattagttctccaatttt 45283103  T
Q  553 aaatgtacaaataacata 570  Q
    || |||||||||||||||    
T  45283102 aattgtacaaataacata 45283085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 536 - 568
Target Start/End: Original strand, 40262471 - 40262503
Alignment:
Q  536 attagttgtccaattttaaatgtacaaataaca 568  Q
    |||||||||||||||||| ||||||||||||||    
T  40262471 attagttgtccaattttagatgtacaaataaca 40262503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 79; Significance: 1e-36; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 452 - 574
Target Start/End: Original strand, 900915 - 901037
Alignment:
Q  452 acaaccaacaacttatttgctatttttaataatattttatctgattttgatttctatgctcctcacaaaattaaaggttattgaattagttgtccaattt 551  Q
    |||||||||||||||||||||||||||||| |||||||   |||||||| |||| |||||||||||||||||||| ||| ||| ||| ||||||||||||    
T  900915 acaaccaacaacttatttgctatttttaatgatattttgcatgattttgttttccatgctcctcacaaaattaaaagttgttgcattggttgtccaattt 901014  T
Q  552 taaatgtacaaataacatagctc 574  Q
    || ||||||||||||||||||||    
T  901015 tagatgtacaaataacatagctc 901037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 452 - 575
Target Start/End: Original strand, 15434442 - 15434565
Alignment:
Q  452 acaaccaacaacttatttgctatttttaataatattttatctgattttgatttctatgctcctcacaaaattaaaggttattgaattagttgtccaattt 551  Q
    |||||||||||||||||||||| ||||||| |||||||   |||||||||||||| ||||||||| ||| ||||||||| ||  |||| ||||||| |||    
T  15434442 acaaccaacaacttatttgctacttttaatgatattttgcttgattttgatttctgtgctcctcataaagttaaaggttgttccattaattgtccacttt 15434541  T
Q  552 taaatgtacaaataacatagctca 575  Q
    || |||||||||||||| ||||||    
T  15434542 tagatgtacaaataacacagctca 15434565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 452 - 576
Target Start/End: Original strand, 2250356 - 2250480
Alignment:
Q  452 acaaccaacaacttatttgctatttttaataatattttatctgattttgatttctatgctcctcacaaaattaaaggttattgaattagttgtccaattt 551  Q
    |||| |||||| ||||||  |||||||||| |||||||   |||||||||||||  | |||||||||||||||||  |||||| ||| ||| ||||||||    
T  2250356 acaatcaacaatttatttattatttttaatgatattttgcatgattttgatttccgtactcctcacaaaattaaaaattattgcattggttatccaattt 2250455  T
Q  552 taaatgtacaaataacatagctcat 576  Q
    || || |||||||||||||||||||    
T  2250456 tagatatacaaataacatagctcat 2250480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 474 - 574
Target Start/End: Original strand, 30839962 - 30840062
Alignment:
Q  474 tttttaataatattttatctgattttgatttctatgctcctcacaaaattaaaggttattgaattagttgtccaattttaaatgtacaaataacatagct 573  Q
    ||||||||||||||||   |||||| ||||||| | ||||||||||| ||||||||| ||  |||  ||||||||||||| |||||||||||| ||||||    
T  30839962 tttttaataatattttgcttgatttcgatttctgtactcctcacaaagttaaaggttgttccattgattgtccaattttatatgtacaaataatatagct 30840061  T
Q  574 c 574  Q
    |    
T  30840062 c 30840062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 452 - 518
Target Start/End: Complemental strand, 8317444 - 8317378
Alignment:
Q  452 acaaccaacaacttatttgctatttttaataatattttatctgattttgatttctatgctcctcaca 518  Q
    |||||||||||||| |||||||||||| |  |||||||  |||||||||||||   |||||||||||    
T  8317444 acaaccaacaacttttttgctattttttaatatatttttactgattttgatttgcgtgctcctcaca 8317378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 75; Significance: 3e-34; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 452 - 574
Target Start/End: Complemental strand, 26847799 - 26847677
Alignment:
Q  452 acaaccaacaacttatttgctatttttaataatattttatctgattttgatttctatgctcctcacaaaattaaaggttattgaattagttgtccaattt 551  Q
    |||||||||||||||||||||||||||||| |||||||   |||||||| ||||  ||||||||||||||||||| ||||||| ||| |||||| |||||    
T  26847799 acaaccaacaacttatttgctatttttaatgatattttgcatgattttgttttccgtgctcctcacaaaattaaaagttattgcattggttgtctaattt 26847700  T
Q  552 taaatgtacaaataacatagctc 574  Q
    || ||||||||||||||||||||    
T  26847699 tagatgtacaaataacatagctc 26847677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 452 - 571
Target Start/End: Original strand, 40034757 - 40034876
Alignment:
Q  452 acaaccaacaacttatttgctatttttaataatattttatctgattttgatttctatgctcctcacaaaattaaaggttattgaattagttgtccaattt 551  Q
    ||||||||||||||||||  |||||||||||||||||||  ||||||| |||||  ||||||||| ||||||||| ||| ||| ||| ||||||||||||    
T  40034757 acaaccaacaacttatttattatttttaataatattttacatgattttaatttccgtgctcctcataaaattaaaagttgttgcattggttgtccaattt 40034856  T
Q  552 taaatgtacaaataacatag 571  Q
    ||||||||||||||||||||    
T  40034857 taaatgtacaaataacatag 40034876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 493 - 569
Target Start/End: Original strand, 8913926 - 8914002
Alignment:
Q  493 tgattttgatttctatgctcctcacaaaattaaaggttattgaattagttgtccaattttaaatgtacaaataacat 569  Q
    |||||| ||||| | |||||||||||| |||||||||| ||| ||||||||| ||||||| | ||||||||||||||    
T  8913926 tgatttcgatttgtgtgctcctcacaatattaaaggttgttgcattagttgttcaattttgattgtacaaataacat 8914002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 517 - 574
Target Start/End: Original strand, 30074962 - 30075019
Alignment:
Q  517 caaaattaaaggttattgaattagttgtccaattttaaatgtacaaataacatagctc 574  Q
    |||||||||| ||| ||| ||| |||||||||||||| ||||||||||||||||||||    
T  30074962 caaaattaaaagttgttgcattggttgtccaattttagatgtacaaataacatagctc 30075019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 452 - 561
Target Start/End: Original strand, 2043761 - 2043872
Alignment:
Q  452 acaaccaacaacttatttgctatttttaataatattttatctgattttgatttctatgctcctcacaaaattaaaggt--tattgaattagttgtccaat 549  Q
    ||||||||||||||||||||||| |||||| |||||||   |||||| ||||| | ||||||| ||||| ||||| ||  | ||| |||  |||||||||    
T  2043761 acaaccaacaacttatttgctatctttaatgatattttgattgatttcgatttatgtgctccttacaaagttaaaagttgtgttgcattgattgtccaat 2043860  T
Q  550 tttaaatgtaca 561  Q
    |||| |||||||    
T  2043861 tttagatgtaca 2043872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 530 - 571
Target Start/End: Complemental strand, 30796726 - 30796685
Alignment:
Q  530 tattgaattagttgtccaattttaaatgtacaaataacatag 571  Q
    ||||| ||||||||||||||||||| |||| |||||||||||    
T  30796726 tattggattagttgtccaattttaattgtagaaataacatag 30796685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 75; Significance: 3e-34; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 452 - 574
Target Start/End: Original strand, 33538205 - 33538327
Alignment:
Q  452 acaaccaacaacttatttgctatttttaataatattttatctgattttgatttctatgctcctcacaaaattaaaggttattgaattagttgtccaattt 551  Q
    |||||||||||||||||| ||||||||||| |||||||   |||||||||||||  | |||||||||||||||||  |||||| ||| ||||||||||||    
T  33538205 acaaccaacaacttatttactatttttaatgatattttgcatgattttgatttccgtactcctcacaaaattaaaaattattgcattggttgtccaattt 33538304  T
Q  552 taaatgtacaaataacatagctc 574  Q
    |||||||||||||||||||||||    
T  33538305 taaatgtacaaataacatagctc 33538327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 452 - 549
Target Start/End: Original strand, 24441980 - 24442077
Alignment:
Q  452 acaaccaacaacttatttgctatttt-taataatattttatctgattttgatttctatgctcctcacaaaattaaaggttattgaattagttgtccaat 549  Q
    |||||||||||| | ||||||||||| ||||| | |||||  |||||| |||||  ||||||||||||| |||||| | | ||| ||||||||||||||    
T  24441980 acaaccaacaacctttttgctattttataatatttttttag-tgatttcgatttgcatgctcctcacaatattaaaaggtgttgcattagttgtccaat 24442077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 71; Significance: 8e-32; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 71; E-Value: 8e-32
Query Start/End: Original strand, 452 - 574
Target Start/End: Original strand, 38174650 - 38174772
Alignment:
Q  452 acaaccaacaacttatttgctatttttaataatattttatctgattttgatttctatgctcctcacaaaattaaaggttattgaattagttgtccaattt 551  Q
    |||||||| |||||| ||| ||||||||||||||||||   |||||| ||||||| ||||||||||||| ||||||||| ||| ||| ||||||||||||    
T  38174650 acaaccaataacttacttgatatttttaataatattttgcttgatttcgatttctgtgctcctcacaaagttaaaggttgttgcattggttgtccaattt 38174749  T
Q  552 taaatgtacaaataacatagctc 574  Q
    || ||||||||||||||||||||    
T  38174750 tagatgtacaaataacatagctc 38174772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 452 - 574
Target Start/End: Original strand, 6494773 - 6494895
Alignment:
Q  452 acaaccaacaacttatttgctatttttaataatattttatctgattttgatttctatgctcctcacaaaattaaaggttattgaattagttgtccaattt 551  Q
    |||| ||| ||||||||||||||||||||| |||||||   |||||||| ||||  ||||| ||||||||||||| ||| ||| ||| ||||||||||||    
T  6494773 acaatcaataacttatttgctatttttaatgatattttgcatgattttgttttccgtgctcttcacaaaattaaaagttgttgcattggttgtccaattt 6494872  T
Q  552 taaatgtacaaataacatagctc 574  Q
    || ||||||||||||||||||||    
T  6494873 tagatgtacaaataacatagctc 6494895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 452 - 574
Target Start/End: Complemental strand, 45849551 - 45849428
Alignment:
Q  452 acaaccaacaacttatttgctatttttaataatattttatctgattttga-tttctatgctcctcacaaaattaaaggttattgaattagttgtccaatt 550  Q
    |||||||| || ||||||||||||||||||||||||||   ||||||| | ||| | |||||||||||| |||||| ||| ||| |||  ||||| ||||    
T  45849551 acaaccaataatttatttgctatttttaataatattttgcttgattttcaatttatgtgctcctcacaacattaaaagttgttgcattgattgtcaaatt 45849452  T
Q  551 ttaaatgtacaaataacatagctc 574  Q
    ||| ||||||||||||||||||||    
T  45849451 ttagatgtacaaataacatagctc 45849428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 68; Significance: 5e-30; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 452 - 571
Target Start/End: Original strand, 9388590 - 9388709
Alignment:
Q  452 acaaccaacaacttatttgctatttttaataatattttatctgattttgatttctatgctcctcacaaaattaaaggttattgaattagttgtccaattt 551  Q
    |||||||||||||||||| ||||||||||| ||||||| |||||||| ||||| | ||||||||||||||||| ||||| ||| ||| ||||| ||||||    
T  9388590 acaaccaacaacttatttactatttttaatgatattttgtctgatttcgatttatgtgctcctcacaaaattagaggttgttgcattggttgttcaattt 9388689  T
Q  552 taaatgtacaaataacatag 571  Q
    || | |||||||||||||||    
T  9388690 tagaggtacaaataacatag 9388709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 452 - 552
Target Start/End: Original strand, 10366595 - 10366695
Alignment:
Q  452 acaaccaacaacttatttgctatttttaataatattttatctgattttgatttctatgctcctcacaaaattaaaggttattgaattagttgtccaattt 551  Q
    ||||||||||||||||||| |||||||||| ||||||||| |||||| ||||| | ||||||||| ||| ||||||||| ||| |||| | ||||| |||    
T  10366595 acaaccaacaacttatttgttatttttaatgatattttatttgatttcgatttatgtgctcctcataaagttaaaggttgttgcattaatcgtccacttt 10366694  T
Q  552 t 552  Q
    |    
T  10366695 t 10366695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 452 - 568
Target Start/End: Complemental strand, 26029092 - 26028976
Alignment:
Q  452 acaaccaacaacttatttgctatttttaataatattttatctgattttgatttctatgctcctcacaaaattaaaggttattgaattagttgtccaattt 551  Q
    |||| ||||||||| |||| ||||||| |  |||||||  |||||||||||||   |||||||||||   | |||| || ||| || |||||| ||||||    
T  26029092 acaagcaacaacttttttgttattttttaatatatttttactgattttgatttgcgtgctcctcacattgtcaaagattgttgtataagttgtacaattt 26028993  T
Q  552 taaatgtacaaataaca 568  Q
    ||  |||||||||||||    
T  26028992 tagttgtacaaataaca 26028976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 47; Significance: 2e-17; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 452 - 514
Target Start/End: Complemental strand, 37819931 - 37819869
Alignment:
Q  452 acaaccaacaacttatttgctatttttaataatattttatctgattttgatttctatgctcct 514  Q
    ||||||||||| ||||||||||| ||||||||||||||||||||||| ||||||||| |||||    
T  37819931 acaaccaacaatttatttgctatgtttaataatattttatctgatttcgatttctatactcct 37819869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 447 - 575
Target Start/End: Original strand, 43899032 - 43899161
Alignment:
Q  447 tgtgaacaaccaacaacttatttgctattttt-aataatattttatctgattttgatttctatgctcctcacaaaattaaaggttattgaattagttgtc 545  Q
    |||| |||||||||||||| |||||||||||| |||| | ||||   ||||||||||||   ||||||| |||  |||||||| | ||| |||||||||     
T  43899032 tgtgtacaaccaacaacttctttgctattttttaatattttttttattgattttgatttgcgtgctccttacagtattaaagggtgttgcattagttgtt 43899131  T
Q  546 caattttaaatgtacaaataacatagctca 575  Q
    |||||||   ||||||||||||||||||||    
T  43899132 caattttggttgtacaaataacatagctca 43899161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 474 - 568
Target Start/End: Complemental strand, 28321110 - 28321017
Alignment:
Q  474 tttttaataatattttatctgattttgatttctatgctcctcacaaaattaaaggttattgaattagttgtccaattttaaatgtacaaataaca 568  Q
    ||||||||| | |||||| ||||||||||||   ||||||||||||| | ||||||| ||| || |||||||||||||||| |||||| ||||||    
T  28321110 tttttaatacttttttat-tgattttgatttgcgtgctcctcacaaagtcaaaggttgttgcataagttgtccaattttaattgtacatataaca 28321017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 540 - 576
Target Start/End: Original strand, 24512335 - 24512371
Alignment:
Q  540 gttgtccaattttaaatgtacaaataacatagctcat 576  Q
    |||||||||||||||||||||||||||||||||||||    
T  24512335 gttgtccaattttaaatgtacaaataacatagctcat 24512371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 540 - 575
Target Start/End: Complemental strand, 37819171 - 37819136
Alignment:
Q  540 gttgtccaattttaaatgtacaaataacatagctca 575  Q
    ||||||||||||||||||||||||||||||||||||    
T  37819171 gttgtccaattttaaatgtacaaataacatagctca 37819136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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