View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15026_low_4 (Length: 662)
Name: NF15026_low_4
Description: NF15026
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15026_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 491; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 491; E-Value: 0
Query Start/End: Original strand, 14 - 648
Target Start/End: Complemental strand, 19211284 - 19210634
Alignment:
| Q |
14 |
atatcaccgaatcaacgtctcgaaagagcaaattcaatcatcgtcattgcatccttacgtggaaacgtggcacattcatgatatatgatggtaaatcaga |
113 |
Q |
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| T |
19211284 |
atatcactgaatcaacgtctcgaaagagcaaattcaatcatcgccattgcatccttatgtggaagcgtggcacattaatgagatatgatggtaaatcaga |
19211185 |
T |
|
| Q |
114 |
tcttctgagacacatgttataggcatct-aactgaatgaacatcatccaaacatcaccaacaaacacaactgtttatcatcagtgcaacgatataaggtg |
212 |
Q |
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| T |
19211184 |
ccttttgagacacatgttataggcatcttaactgaatgagcatcatccaaacatcaccaacaaacacaactgttcatcatcaacgcaacgatataaaatg |
19211085 |
T |
|
| Q |
213 |
tgtagagtcggcccgtttaggacacgcaccccacggacacgggcaaaccacaccacttacaattcactacccacaaagtattcccaaaagggacattcac |
312 |
Q |
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| T |
19211084 |
tgtagagttggcccgtttaggacaagcgccccacggacatgggcaaaccacaccacttacaattcactacccacaaagtattcccaaaaaggacattcac |
19210985 |
T |
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| Q |
313 |
ataaattagatttcataatatgatcatcagatttattcgttttttcgttcattcatcatcg----------------tgagtgtgagtatacccaaaaca |
396 |
Q |
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| T |
19210984 |
ataaattagatttcataatatgatcatcagatttattagttttttcgttcattcatcatcgtgtttgcaacttctcatgagtgtgagtatacccaaaaca |
19210885 |
T |
|
| Q |
397 |
cagttgacaataagaaataagagcaagaccaagggatataaaaaagcataagaactgaatctatattagcatttcatctcattgccgtataatttataag |
496 |
Q |
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| T |
19210884 |
cagttgacaataataaataagagcaagaccaagagatat-aaaaagcataagaactgaacctatattagcatttcatctcattgccgtataatttataag |
19210786 |
T |
|
| Q |
497 |
cttcttctcctttaccatcaacatgtatacaaaatattattatcatgattttccttttccttattgaaacccttaatcctaaaataatgaggaaggaggg |
596 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19210785 |
cttcttctcctttaccatcaacatgtatacaaaatattattatcatgattttccttttccttattgaaacccttaatcctaaaataatgaggaaggaggg |
19210686 |
T |
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| Q |
597 |
aagggaaactcacctctaattctaggttggaattgatgattcaagcttcaat |
648 |
Q |
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| T |
19210685 |
aagggaaactcacctctaattctaggttggaattgatgattcaagcttcaat |
19210634 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 563 - 603
Target Start/End: Complemental strand, 42641752 - 42641712
Alignment:
| Q |
563 |
aaacccttaatcctaaaataatgaggaaggagggaagggaa |
603 |
Q |
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| T |
42641752 |
aaacccttaatcccaaaataatgaggaatgagggaagggaa |
42641712 |
T |
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