View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15026_low_8 (Length: 563)
Name: NF15026_low_8
Description: NF15026
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15026_low_8 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 513; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 513; E-Value: 0
Query Start/End: Original strand, 19 - 563
Target Start/End: Complemental strand, 37225911 - 37225367
Alignment:
| Q |
19 |
cctcctacacatacaccaccaacccacatgatgaaaatgaaatagtagcagaccaagatgaagtcaatgatccaatcccagtcattgattattctctcct |
118 |
Q |
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| T |
37225911 |
cctcctacacatacaccaccaacccacatgatgaaaatgaaatagtagcagaccaagatgaagtcaatgatccaatcccagtcattgattattctctcct |
37225812 |
T |
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| Q |
119 |
gatcaacagtaatcatgatcaacggaccaaaaccatccatgatataggcaaggcttgtgaggagtggggtttcttcatactaaccaatcactctgtatca |
218 |
Q |
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| T |
37225811 |
gatcaacggtaatcatgatcaacggaccaaaaccatccatgatataggcaaggcttgtgaggagtggggattcttcatactaaccaatcactctgtatca |
37225712 |
T |
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| Q |
219 |
aagagtctcatggagaaaatggttgaccaagtttttgctttctttaatcttaaagaagaagataaacaagtgtatgcagataaggaagtaaaggatgatt |
318 |
Q |
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| T |
37225711 |
aagagtctcatggagaaaatggttgaccaagtttttgctttctttaaccttaaagaagaagataagcaagtgtatgcagataaggaagtaacggatgatt |
37225612 |
T |
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| Q |
319 |
caataaagtatggtacaagcttcaatgtttcaggggataaaaacttgttctggagggatttcattaaaattattgttcatcctgaatttcactcaccgga |
418 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
37225611 |
caataaagtatggtacaagcttcaatgtttcaggggataaaaacttgttctggagggatttcattaaaattattgttcatcctaaatttcactcaccgga |
37225512 |
T |
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| Q |
419 |
taaaccttctggcttcaggtttttgcttattctctcttttgctttttccttgcaactctaaatccaccatatgctcagtctaaatcaccacatgttgtag |
518 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37225511 |
taaaccttctggcttcaggtttttgcttattctctcttttactttttccttgcaactctaaatccaccatatgctcagtctaaatcaccacatgttgtag |
37225412 |
T |
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| Q |
519 |
attcttaggttgctttgctcagaagttttaagttctaaattgttt |
563 |
Q |
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| T |
37225411 |
attcttaggttgctttgctcataagttttaagttctaaattgttt |
37225367 |
T |
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