View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15026_low_9 (Length: 508)
Name: NF15026_low_9
Description: NF15026
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15026_low_9 |
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Alignment Details
Target: chr8 (Bit Score: 409; Significance: 0; HSPs: 7)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 409; E-Value: 0
Query Start/End: Original strand, 15 - 491
Target Start/End: Complemental strand, 12646789 - 12646313
Alignment:
| Q |
15 |
catcatcatcgtcaaaatccaagtccatctcccagaaagggctattcttctctggcaaaattacccaagcaccttcaaaaaatatgtgaaaactaataat |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||| || |
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|
| T |
12646789 |
catcatcatcgtcaaaatccaagtccatctcccagaaagggctattcttctctggcaaaaaaacccaagcaccttcaaaaaatatgtgaaaattaaccat |
12646690 |
T |
|
| Q |
115 |
tcgaataatcttatagtcatctctaacacgatcataaccaaatgaataaggttgagtattaaactcaatgtacttatatggtcgatggctacaaggaaca |
214 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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|
| T |
12646689 |
tcgaataatcttatagtcatctctaacacgatcataaccaaatgaataaggttgagtattaaactcaatgttcttatatggtcgatggctacaaggaaca |
12646590 |
T |
|
| Q |
215 |
atcttaaattccccagtggctggattccacaatacaatggtcatggggtcaagaaaaccttgagagagacaaagaatgccattaacactagctgaacacc |
314 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
12646589 |
atcttaaattccccgttggctggattccacaatacaatggtcatggggtcaataaaaccttgagagagacaaagaatgccattaacactagctgaacacc |
12646490 |
T |
|
| Q |
315 |
aacaacgaacaaatggacaaccctctcgttgaaaatgaagaggaggtagcaactctaatctgactctattctcaaaattctcaccgtaaaatgtgcacag |
414 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||| ||||||||||||| |
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|
| T |
12646489 |
aacaacgaacaaatggacaaccctctcgttgaaaatgaagaggaggtggcaactctaatctgactctattctcaaaactctcaccggaaaatgtgcacag |
12646390 |
T |
|
| Q |
415 |
agtgttgtaatttaggataagattcgtgctgtcttcttcctcattatgtttggatatgaaattagtgcggaacaagt |
491 |
Q |
| |
|
||||| ||||| ||||| ||||||| || |||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
12646389 |
agtgtcgtaatctaggagaagattcttgttgtcttcttcctcattatgtttggatatgaaattagtgcggaacaagt |
12646313 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 381; E-Value: 0
Query Start/End: Original strand, 15 - 491
Target Start/End: Complemental strand, 12651921 - 12651445
Alignment:
| Q |
15 |
catcatcatcgtcaaaatccaagtccatctcccagaaagggctattcttctctggcaaaattacccaagcaccttcaaaaaatatgtgaaaactaataat |
114 |
Q |
| |
|
|||||| ||| ||||| |||||||||||||||||||||||||||||| ||||||||||||||| ||| ||||||||||||||| ||||||||||||||| |
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|
| T |
12651921 |
catcattatcatcaaattccaagtccatctcccagaaagggctattcatctctggcaaaattatccatgcaccttcaaaaaat--gtgaaaactaataat |
12651824 |
T |
|
| Q |
115 |
tcgaataatcttatagtcatctctaacacgatcataaccaaatgaataaggttgagtattaaactcaatgtacttatatggtcgat--ggctacaaggaa |
212 |
Q |
| |
|
|||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||| |
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|
| T |
12651823 |
tcgaataatcttatggtcatccttaacacgatcataaccaaatgaataaggttgagtattaaactcaatgtatttatatggtcgatatggctacaaggaa |
12651724 |
T |
|
| Q |
213 |
caatcttaaattccccagtggctggattccacaatacaatggtcatggggtcaagaaaaccttgagagagacaaagaatgccattaacactagctgaaca |
312 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
12651723 |
caatcttaaattccccggtggctggattccacaatacaatggtcatggggtcaagaaaaccttgagagagacaaagaatgccattaacactagctgaaca |
12651624 |
T |
|
| Q |
313 |
ccaacaacgaacaaatggacaaccctctcgttgaaaatgaagaggaggtagcaactctaatctgactctattctcaaaattctcaccgtaaaatgtgcac |
412 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||| ||||| || |||||||||| |
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|
| T |
12651623 |
ccaacaacgaacaaatggacaaccctctcgttgaaaatgaagaggatgtggcaactctaatctgactctattctcaaaactctcatcggaaaatgtgcaa |
12651524 |
T |
|
| Q |
413 |
agagtgttgtaatttaggataagattcgtgctgtcttcttcctcattatgtttggatatgaaattagtgcggaacaagt |
491 |
Q |
| |
|
||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
12651523 |
agagtgtcgtaatttaggataagattcgtgttgtcttcttcctcattatgtttggatatgaaattagtgcggaacaagt |
12651445 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 172 - 255
Target Start/End: Complemental strand, 12724418 - 12724335
Alignment:
| Q |
172 |
attaaactcaatgtacttatatggtcgatggctacaaggaacaatcttaaattccccagtggctggattccacaatacaatggt |
255 |
Q |
| |
|
|||||||||||||| || ||| || |||||||| |||||||| |||||||||| | |||||||||||||||||||||||||| |
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|
| T |
12724418 |
attaaactcaatgttctcatacggctgatggctatgaggaacaaccttaaattcctcggtggctggattccacaatacaatggt |
12724335 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 118 - 157
Target Start/End: Complemental strand, 4027522 - 4027483
Alignment:
| Q |
118 |
aataatcttatagtcatctctaacacgatcataaccaaat |
157 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||| |
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|
| T |
4027522 |
aataatcttatagtcatctctaacacggtcataaccaaat |
4027483 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 124 - 158
Target Start/End: Complemental strand, 6117428 - 6117394
Alignment:
| Q |
124 |
cttatagtcatctctaacacgatcataaccaaatg |
158 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||| |
|
|
| T |
6117428 |
cttatagtcatatctaacacgatcataaccaaatg |
6117394 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 125 - 158
Target Start/End: Original strand, 12712299 - 12712332
Alignment:
| Q |
125 |
ttatagtcatctctaacacgatcataaccaaatg |
158 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||| |
|
|
| T |
12712299 |
ttatagtcatgtctaacacgatcataaccaaatg |
12712332 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 124 - 157
Target Start/End: Original strand, 14682403 - 14682436
Alignment:
| Q |
124 |
cttatagtcatctctaacacgatcataaccaaat |
157 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||| |
|
|
| T |
14682403 |
cttataatcatctctaacacgatcataaccaaat |
14682436 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 118 - 157
Target Start/End: Complemental strand, 30651177 - 30651138
Alignment:
| Q |
118 |
aataatcttatagtcatctctaacacgatcataaccaaat |
157 |
Q |
| |
|
||||||||||||||||||||||||| | |||||||||||| |
|
|
| T |
30651177 |
aataatcttatagtcatctctaacatggtcataaccaaat |
30651138 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 118 - 157
Target Start/End: Complemental strand, 31777523 - 31777484
Alignment:
| Q |
118 |
aataatcttatagtcatctctaacacgatcataaccaaat |
157 |
Q |
| |
|
||||||||||||||||||||||||| | |||||||||||| |
|
|
| T |
31777523 |
aataatcttatagtcatctctaacatggtcataaccaaat |
31777484 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 118 - 157
Target Start/End: Original strand, 29352912 - 29352951
Alignment:
| Q |
118 |
aataatcttatagtcatctctaacacgatcataaccaaat |
157 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
29352912 |
aataatcttatagtcatctctaacacagtcataaccaaat |
29352951 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 118 - 157
Target Start/End: Complemental strand, 34324946 - 34324907
Alignment:
| Q |
118 |
aataatcttatagtcatctctaacacgatcataaccaaat |
157 |
Q |
| |
|
||||||||||||||||||||||||| | |||||||||||| |
|
|
| T |
34324946 |
aataatcttatagtcatctctaacatggtcataaccaaat |
34324907 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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