View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15027_high_1 (Length: 575)
Name: NF15027_high_1
Description: NF15027
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15027_high_1 |
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Alignment Details
Target: chr1 (Bit Score: 530; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 530; E-Value: 0
Query Start/End: Original strand, 1 - 562
Target Start/End: Original strand, 25557718 - 25558279
Alignment:
| Q |
1 |
tcatccccaaagtgaacttccttaatcttcctaaaagcatgaagagtcagcaaactatcagaccccgcctgatgactcttcccagcaacacgatccacat |
100 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25557718 |
tcattcccaaagtgaacttccttaatcttcctaaaagcatgaagagtcagcaaactatcagaccccgcctgatgactcttcccagcaacacgatccacat |
25557817 |
T |
|
| Q |
101 |
tcagcgtcttcccaactctatccaaaccaccatacaacccttcacaaaacttcaccaaatgcttcacatcataaacactctccccaaagaaaaccctaac |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25557818 |
tcagcgtcttcccaactctatccaaaccaccatacaacccttcacaaaacttcaccaaatgcttcacatcataaacactctccccaaagaaaaccctaac |
25557917 |
T |
|
| Q |
201 |
cagcaccagaaactcagcaagctcatcaggcaaagctctctgcgtcaacgccttcaccaaatatccgaaatcatatccgctatgaaatgtcacccagcta |
300 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25557918 |
cagcaccagaaactcagcaagctcatcaggcaaagctctctgcgtcaacgccttcaccaaatatccgaaatcatatccgctatgaaatgtcacccagcta |
25558017 |
T |
|
| Q |
301 |
acctcctccttacacacaagtccagaactcatcatcaactcagcaaacttcactgactcaaccccaaattccttattcttctcaaaatcaatcccctgac |
400 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25558018 |
acctcctcattacacacaagtccagaactcatcatcaactcagcaaacttcattgactcaaccccaaattccttattcttctcaaaatcaatcccctgac |
25558117 |
T |
|
| Q |
401 |
tcttcagcaattcaattgactcgtgcgcgtgaatatcacgcacaacatcaaaatcactgaaattaaattcccaaattagaaactcctctgaatttccatt |
500 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25558118 |
tcttcagcaattcaattgactcatgcgcgtgaatatcacgcacaacatcaaaatcactgaaattaaattcccaaattagaaactcctctgaatttccatt |
25558217 |
T |
|
| Q |
501 |
ttccaatttcggcaggttacctttgtcataggataaagtgagaccaacttggatgagattaa |
562 |
Q |
| |
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||||||||| ||||||||||||||| ||| ||||||||||||||||||||| |||||||||| |
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|
| T |
25558218 |
ttccaatttgggcaggttacctttggcatcggataaagtgagaccaacttgtatgagattaa |
25558279 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 1 - 562
Target Start/End: Original strand, 25553389 - 25553950
Alignment:
| Q |
1 |
tcatccccaaagtgaacttccttaatcttcctaaaagcatgaagagtcagcaaactatcagaccccgcctgatgactcttcccagcaacacgatccacat |
100 |
Q |
| |
|
|||| |||||||| ||||||||| |||||||||||||||||||||||||||||||||||||| ||||||| |||| |||||||| |||| |||||||||| |
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| T |
25553389 |
tcattcccaaagtaaacttccttgatcttcctaaaagcatgaagagtcagcaaactatcagaacccgcctcatgagtcttcccaacaacccgatccacat |
25553488 |
T |
|
| Q |
101 |
tcagcgtcttcccaactctatccaaaccaccatacaacccttcacaaaacttcaccaaatgcttcacatcataaacactctccccaaagaaaaccctaac |
200 |
Q |
| |
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||||| |||||||||| ||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25553489 |
tcagcatcttcccaaccctatccaaaccaccatacaacccctcacaaaactttgccaaatgcttcacatcataaacactctccccaaagaaaaccctaac |
25553588 |
T |
|
| Q |
201 |
cagcaccagaaactcagcaagctcatcaggcaaagctctctgcgtcaacgccttcaccaaatatccgaaatcatatccgctatgaaatgtcacccagcta |
300 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||| || |||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
25553589 |
cagcaccagaaactcagcaagctcttcaggcaaagcatattgagtcaacgccttcaccaaatatccgaaatcataaccgctatgaaatgtcacccagcta |
25553688 |
T |
|
| Q |
301 |
acctcctccttacacacaagtccagaactcatcatcaactcagcaaacttcactgactcaaccccaaattccttattcttctcaaaatcaatcccctgac |
400 |
Q |
| |
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|||||||| ||||||||||||||||||||||||||||| |||||||| || || |||| |||||||||||| || |||||||||||||||||||||| |
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| T |
25553689 |
acctcctcattacacacaagtccagaactcatcatcaattcagcaaatctcctagagtcaatcccaaattccttgtttttctcaaaatcaatcccctgac |
25553788 |
T |
|
| Q |
401 |
tcttcagcaattcaattgactcgtgcgcgtgaatatcacgcacaacatcaaaatcactgaaattaaattcccaaattagaaactcctctgaatttccatt |
500 |
Q |
| |
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|||||||||||||||| ||||| |||||||||||||||||| | | ||||||||||||||||| ||||||||||| ||| ||||||| || |||||||| |
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| T |
25553789 |
tcttcagcaattcaatagactcatgcgcgtgaatatcacgctccaagtcaaaatcactgaaattgaattcccaaatcagagactcctcagagtttccatt |
25553888 |
T |
|
| Q |
501 |
ttccaatttcggcaggttacctttgtcataggataaagtgagaccaacttggatgagattaa |
562 |
Q |
| |
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| |||||| || || ||||| | || |||||||| ||||| |||||||||| ||||| |
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| T |
25553889 |
tctcaattttggaagattaccatcaaaatcagataaagtcagaccgacttggatgatattaa |
25553950 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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