View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15028_low_1 (Length: 837)
Name: NF15028_low_1
Description: NF15028
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15028_low_1 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 364; Significance: 0; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 364; E-Value: 0
Query Start/End: Original strand, 1 - 503
Target Start/End: Original strand, 29040005 - 29040505
Alignment:
| Q |
1 |
aacaaaatcagttaagaattatcttgatcgttaatcaaaatgaatgattgaaatcgaaaattgcagatggagttactacaccaaatcaaaatccaatata |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||| |||||||||||||||| |
|
|
| T |
29040005 |
aacaaaatcagttaagaattatcttgatcgttaatcaaaatgaatgattgaaatcgataattgcggatggagttactaca----atcaaaatccaatata |
29040100 |
T |
|
| Q |
101 |
ttcttttagatttgtcactcaataaattgctacattccttgtgttacttttttatgtgaaggtacaagatttatgtggaagggatttcatggtctgtgag |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29040101 |
ttcttttagatttgtcactcaataaattgctacattccttgtgttactcttttatgtgaaggtacaagatttatgtggaagggatttcatggtctgtgag |
29040200 |
T |
|
| Q |
201 |
tgaaaaatatataatagcatgtgattcaatgacattgttcataaagccaagatattatgatttctttacaagaagcctagtaccttataagcattactgg |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
29040201 |
tgaaaaatatataatagcatgtgattcaatgacattgttcataaagccaagatattatgatttctttacaagaagcctagtaccttataagcactactgg |
29040300 |
T |
|
| Q |
301 |
cccatcaacaagcaaaacatgtgtcaagatattaagtatgctgtagattggggcaatactcatccagggaaggtaatccctatattcc-ttcccctaata |
399 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||| |||||||||||||||||||| ||||| ||||| |
|
|
| T |
29040301 |
cccatcaacaagcaaaacatgtgtcaagatattaagtatgctgttgattggggcaatacacatccagagaaggtaatccctatattcctttcccgtaata |
29040400 |
T |
|
| Q |
400 |
ctataatattttctcatataaaatgtcaatatatgtct-ataagtaaagctcaaatgataaaagattggagagaaatttgatatgttgtgacgtgagttc |
498 |
Q |
| |
|
||||| || || || |||||||| |||||||||| || | ||||| || ||||| |||||||||||||| | | ||||||||| || ||| |||||| |
|
|
| T |
29040401 |
ctatagtaattgctgttataaaatctcaatatatgcctcagaagtatagttcaaacgataaaagattggataaacatttgatattctgggacttgagttt |
29040500 |
T |
|
| Q |
499 |
gaact |
503 |
Q |
| |
|
||||| |
|
|
| T |
29040501 |
gaact |
29040505 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 69 - 523
Target Start/End: Original strand, 29018715 - 29019164
Alignment:
| Q |
69 |
ggagttactacaccaaatcaaaatccaatatattcttttagatttgtcactcaataaattgctacattccttgtgttacttttttatgtgaaggtacaag |
168 |
Q |
| |
|
|||||||||| ||||||||||||||||||| | ||||| ||||||||| | |||||||||||||| |||||||| ||||||| | |||||||||||| |
|
|
| T |
29018715 |
ggagttactaaaccaaatcaaaatccaata----cctttaggtttgtcacttagtaaattgctacatttcttgtgttgctttttt-tatgaaggtacaag |
29018809 |
T |
|
| Q |
169 |
atttatgtggaagggatttcatggtctgtgagtgaaaaatatataatagcatgtgattcaatgacattgttcataaagccaagatattatgatttcttta |
268 |
Q |
| |
|
||||| |||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29018810 |
atttacgtggaagggagatcatggtctgtgagtgaaaaatatataatagcatgtgactcaatgacattgttcataaagccaagatattatgatttcttta |
29018909 |
T |
|
| Q |
269 |
caagaagcctagtaccttataagcattactggcccatcaacaagcaaaacatgtgtcaagatattaagtatgctgtagattggggcaatactcatccagg |
368 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
29018910 |
caagaagcctagtaccttataagcactactggcccatcaacaagcaaaacatgtgtcaagatattaagtatgctgttgattggggcaatactcatccagg |
29019009 |
T |
|
| Q |
369 |
gaaggtaatccctatattccttcccctaatactataatattttctcatataaaatgtcaatatatgtctataagtaaagctcaaatgataaaagattgga |
468 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||| |
|
|
| T |
29019010 |
gaaggtaatccctatattccttcccctaatactataatattttctcatataaaatgtcaatacatgtctataagtaaagttcaaatgataaaagattgga |
29019109 |
T |
|
| Q |
469 |
gagaaatttgatatgttgtgacgtgagttcgaactcgcaattctccatttctttg |
523 |
Q |
| |
|
|||| ||||||||||||||||||| |||||||| ||||||||||| ||||||||| |
|
|
| T |
29019110 |
gagacatttgatatgttgtgacgtaagttcgaattcgcaattctctatttctttg |
29019164 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 539 - 831
Target Start/End: Original strand, 29041160 - 29041452
Alignment:
| Q |
539 |
aatgcataattcaacaggcacaagagattggcagagaaggtacaaggttcgttgaagagaacgtaaatatgaaattggtgtatgattatatgttacatct |
638 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29041160 |
aatgcataattcaacaggcacaagagattggcagagaaggtacaaggttcgttgaagagaacgtaaatatgaaattggtgtatgattatatgttacatct |
29041259 |
T |
|
| Q |
639 |
attgactgaatatgcaaatctcataagatttgaaccaaaaatacctgcagaagctattgaggtttgtactgaaaatgtggcatgttcaatggatggtata |
738 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29041260 |
attgactgaatatgcaaatctcataagatttgaaccaaaaatacctgcagaagctattgaggtttgtactgaaaatgtggcatgttcaatggatggtata |
29041359 |
T |
|
| Q |
739 |
tggagggaatttatggttgagtccatggttaagtcaccaagtgacacacctccatgtgcaacgttttctccttattttatttatgatgatgtc |
831 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
29041360 |
tggagggaatttatggttgagtccatggttaagtcaccaagtgacacacctccatgtgcaatgttttctccttattttatttatgatgatgtc |
29041452 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 177; E-Value: 6e-95
Query Start/End: Original strand, 543 - 815
Target Start/End: Original strand, 29019471 - 29019743
Alignment:
| Q |
543 |
cataattcaacaggcacaagagattggcagagaaggtacaaggttcgttgaagagaacgtaaatatgaaattggtgtatgattatatgttacatctattg |
642 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||| ||||| ||| | ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29019471 |
cataattcaacaggcagaagagattggcagagaagggacaagattcatagaagagaacgtaaatatgaaattggtgtatgattatatgttacatctattg |
29019570 |
T |
|
| Q |
643 |
actgaatatgcaaatctcataagatttgaaccaaaaatacctgcagaagctattgaggtttgtactgaaaatgtggcatgttcaatggatggtatatgga |
742 |
Q |
| |
|
|||||||||||||| ||||| ||||||||| ||| |||||||||| ||| ||||||||||| ||||||| |||||||| |||||| ||||||||||| |
|
|
| T |
29019571 |
actgaatatgcaaagctcatgagatttgaagcaaccatacctgcaggagcagttgaggtttgttctgaaaacttggcatgtccaatgggtggtatatgga |
29019670 |
T |
|
| Q |
743 |
gggaatttatggttgagtccatggttaagtcaccaagtgacacacctccatgtgcaacgttttctccttattt |
815 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||| |||| ||||||| | | ||||||||||||||| |
|
|
| T |
29019671 |
gggagtttatggttgagtccatggttaagtcaccaagtgatacacttccatgtactatgttttctccttattt |
29019743 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 437 - 518
Target Start/End: Original strand, 26919846 - 26919928
Alignment:
| Q |
437 |
tataagtaaagctcaaatgataaaaga-ttggagagaaatttgatatgttgtgacgtgagttcgaactcgcaattctccattt |
518 |
Q |
| |
|
|||||||| | |||||||||||||| | ||| | ||| ||||||||||||| |||||||| |||||| ||||||||||||| |
|
|
| T |
26919846 |
tataagtataactcaaatgataaaaaaattgtaaagatatttgatatgttgggacgtgaggatgaactcacaattctccattt |
26919928 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 55; Significance: 4e-22; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 150 - 276
Target Start/End: Complemental strand, 11715378 - 11715252
Alignment:
| Q |
150 |
ttttatgtgaaggtacaagatttatgtggaagggatttcatggtctgtgagtgaaaaatatataatagcatgtgattcaatgacattgttcataaagcca |
249 |
Q |
| |
|
|||||||| ||||||||||||||||| |||||| ||||||||||||||||||| || |||||||||||||| || ||||| |||||||| |||| |
|
|
| T |
11715378 |
ttttatgttaaggtacaagatttatgcagaaggggcaacatggtctgtgagtgaaaagtacataatagcatgtgactccatgactatgttcatagagcct |
11715279 |
T |
|
| Q |
250 |
agatattatgatttctttacaagaagc |
276 |
Q |
| |
|
| || ||||||||||||||||||||| |
|
|
| T |
11715278 |
aagtactatgatttctttacaagaagc |
11715252 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.00000002; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 439 - 486
Target Start/End: Complemental strand, 39992223 - 39992176
Alignment:
| Q |
439 |
taagtaaagctcaaatgataaaagattggagagaaatttgatatgttg |
486 |
Q |
| |
|
|||||||| ||||||||||||| |||| ||||||||||||||||||| |
|
|
| T |
39992223 |
taagtaaaactcaaatgataaagaattgcagagaaatttgatatgttg |
39992176 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 448 - 518
Target Start/End: Original strand, 15091290 - 15091360
Alignment:
| Q |
448 |
ctcaaatgataaaagattggagagaaatttgatatgttgtgacgtgagttcgaactcgcaattctccattt |
518 |
Q |
| |
|
|||| ||| ||||| |||| | ||| ||||||||||||| | |||||||| |||||| ||||||||||||| |
|
|
| T |
15091290 |
ctcagatggtaaaatattgcaaagacatttgatatgttggggcgtgagtttgaactcacaattctccattt |
15091360 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University