View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15028_low_2 (Length: 327)
Name: NF15028_low_2
Description: NF15028
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15028_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 264; Significance: 1e-147; HSPs: 11)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 11 - 311
Target Start/End: Original strand, 2391291 - 2391591
Alignment:
| Q |
11 |
atgaaaaatttgacctctcttacttgtttcgaannnnnnnggatcaacaagaaggatatcttcttcattgttgattgcttccctttacttgaagaacttg |
110 |
Q |
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|||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
2391291 |
atgaaaaatttgacctctcttacttgttccgaatttttttggatcaacaagaaggatatcttcttcattgttgattgcttccctttactcgaagaacttg |
2391390 |
T |
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| Q |
111 |
ttctcaaggaaacagactgcactgattacacttctgctaggaagttcgattttgtgctagatgaagataatcattttttggcacttcccaaactccgaaa |
210 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
2391391 |
ttctcaaggaaacagactgcagtgattacacttctgctaggaagttcgattttgtgctagatgaagataataattttttggcacttcccaaactccgaaa |
2391490 |
T |
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| Q |
211 |
gattagtttgtatggttatgacatcgatagccaatttattgattatctccacagcaaccctcgacctttcagaggagaagaataacctagatggtgatga |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2391491 |
gattagtttgtatggttatgacatcgatagccaatttattgattatctccacagcaaccctcgacctttcagaggagaagaataacctagatggtgatga |
2391590 |
T |
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| Q |
311 |
t |
311 |
Q |
| |
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| |
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| T |
2391591 |
t |
2391591 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 159 - 311
Target Start/End: Original strand, 2382915 - 2383069
Alignment:
| Q |
159 |
attttgtgctagatgaagataatcattttttggcacttcccaaactccgaaagattagtttgtatggttatgacatcgatagccaatttattgattatct |
258 |
Q |
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|||||||||||||||| |||||||| ||||||||||||||||||||||||||||||| |||||||||| || ||||||||||||| ||||| ||||||| |
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| T |
2382915 |
attttgtgctagatgatgataatcaatttttggcacttcccaaactccgaaagattaatttgtatggtaattccatcgatagccaaattattaattatct |
2383014 |
T |
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| Q |
259 |
ccacagcaaccctcgaccttt--cagaggagaagaataacctagatggtgatgat |
311 |
Q |
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| T |
2383015 |
tcgcaaaaaccgtggacctttcacagaggagaagaataacttagatggtaatgat |
2383069 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 158 - 311
Target Start/End: Original strand, 2380558 - 2380713
Alignment:
| Q |
158 |
gattttgtgctagatgaagataatcattttttggcacttcccaaactccgaaagattagtttgtatggttatgacatcgatagccaatttattgattatc |
257 |
Q |
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||||||| ||||||||| |||||| | ||||| |||||||| ||||||||||||||||||||||||||| | ||||||||||||| ||||| |||||| |
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| T |
2380558 |
gattttgagctagatgatgataataaatttttagcacttccaaaactccgaaagattagtttgtatggtaactccatcgatagccaaattattaattatc |
2380657 |
T |
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| Q |
258 |
tccacagcaaccctcgacctttca--gaggagaagaataacctagatggtgatgat |
311 |
Q |
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||| || |||| | ||||||||| ||||||||||||||| |||||||| ||||| |
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| T |
2380658 |
tccgcaaaaaccgtggacctttcacggaggagaagaataacttagatggtaatgat |
2380713 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 11 - 125
Target Start/End: Original strand, 2381663 - 2381777
Alignment:
| Q |
11 |
atgaaaaatttgacctctcttacttgtttcgaannnnnnnggatcaacaagaaggatatcttcttcattgttgattgcttccctttacttgaagaacttg |
110 |
Q |
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|||||||||||||||||||||||||||| ||| ||||||||||||||||| |||| |||||||| ||||||||||||||||| |||||||| | |
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| T |
2381663 |
atgaaaaatttgacctctcttacttgttctgaaattacttggatcaacaagaaggatttcttattcattgtcgattgcttccctttactcgaagaactcg |
2381762 |
T |
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| Q |
111 |
ttctcaaggaaacag |
125 |
Q |
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|||||||| |||||| |
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| T |
2381763 |
ttctcaagaaaacag |
2381777 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 51 - 124
Target Start/End: Original strand, 2380439 - 2380512
Alignment:
| Q |
51 |
ggatcaacaagaaggatatcttcttcattgttgattgcttccctttacttgaagaacttgttctcaaggaaaca |
124 |
Q |
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||||||| ||||||||||| | |||||||| |||||||||||||| |||||||| ||| ||||||||||||||| |
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| T |
2380439 |
ggatcaataagaaggatatttacttcattgctgattgcttcccttcacttgaagtactcgttctcaaggaaaca |
2380512 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 200 - 311
Target Start/End: Original strand, 2381814 - 2381927
Alignment:
| Q |
200 |
aaactccgaaagattagtttgtatggttatgacatcgatagccaatttattgattatctccacagcaaccctcgaccttt--cagaggagaagaataacc |
297 |
Q |
| |
|
||||||||||||||||||||| |||| | |||| ||| ||||||||||| ||||||||| || ||||| | ||||||| ||||| ||||||||||| |
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| T |
2381814 |
aaactccgaaagattagtttgcgtggtatttacattgatcgccaatttattaattatctccgcaacaaccgtggacctttcacagagtagaagaataact |
2381913 |
T |
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| Q |
298 |
tagatggtgatgat |
311 |
Q |
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|||||||| ||||| |
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| T |
2381914 |
tagatggtaatgat |
2381927 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 53 - 108
Target Start/End: Complemental strand, 2534047 - 2533992
Alignment:
| Q |
53 |
atcaacaagaaggatatcttcttcattgttgattgcttccctttacttgaagaact |
108 |
Q |
| |
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||||||||||| ||| ||||||| |||| |||||| |||||||||||||||||||| |
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| T |
2534047 |
atcaacaagaatgatctcttcttgattgctgattgtttccctttacttgaagaact |
2533992 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 53 - 108
Target Start/End: Complemental strand, 2547278 - 2547223
Alignment:
| Q |
53 |
atcaacaagaaggatatcttcttcattgttgattgcttccctttacttgaagaact |
108 |
Q |
| |
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|||| |||||| ||| | |||||||||| |||||| |||||||||||||||||||| |
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| T |
2547278 |
atcagcaagaatgatttattcttcattgctgattgtttccctttacttgaagaact |
2547223 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 69 - 110
Target Start/End: Complemental strand, 12124563 - 12124522
Alignment:
| Q |
69 |
tcttcttcattgttgattgcttccctttacttgaagaacttg |
110 |
Q |
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|||||||||||| |||||| ||||||||||| |||||||||| |
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| T |
12124563 |
tcttcttcattgctgattgtttccctttactagaagaacttg |
12124522 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 60 - 124
Target Start/End: Original strand, 2382813 - 2382877
Alignment:
| Q |
60 |
agaaggatatcttcttcattgttgattgcttccctttacttgaagaacttgttctcaaggaaaca |
124 |
Q |
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|||||||||||| ||||||| |||||||||||||||| || | ||| ||||||||||||||| |
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| T |
2382813 |
agaaggatatctatttcattgccaattgcttccctttactcgatgtactcgttctcaaggaaaca |
2382877 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 68 - 108
Target Start/End: Original strand, 2625588 - 2625628
Alignment:
| Q |
68 |
atcttcttcattgttgattgcttccctttacttgaagaact |
108 |
Q |
| |
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|||||||| ||||||||||| ||||||||||| |||||||| |
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|
| T |
2625588 |
atcttctttattgttgattgtttccctttactcgaagaact |
2625628 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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