View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15029_high_4 (Length: 421)
Name: NF15029_high_4
Description: NF15029
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15029_high_4 |
 | |
|
| [»] scaffold0794 (1 HSPs) |
| | |
|
Alignment Details
Target: chr4 (Bit Score: 378; Significance: 0; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 378; E-Value: 0
Query Start/End: Original strand, 19 - 408
Target Start/End: Complemental strand, 11445515 - 11445126
Alignment:
| Q |
19 |
actcctccttcaatgcttctcataagtggcaaatcaacatgtttgtcaccatttgttagcggagtgcttcatccatgtcgtctgaacatgtggcactcct |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
11445515 |
actcctccttcaatgcttctcataagtggcaaatcaacatgtttgtcaccatttgttagcggagtgcttcatccatgtcgtctgaacgtgtggcactcct |
11445416 |
T |
|
| Q |
119 |
ctaagaaatggctcactgaggacaaggaacttagcctctttgagagcgcaagaggagagacattttgggactatcttaacaaagatactgaatctgatga |
218 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11445415 |
ctaagaaatggctcactgaggacaaggaactcagcctatttgagagcgcaagaggagagacattttgggactatcttaacaaagatactgaatctgatga |
11445316 |
T |
|
| Q |
219 |
actgagtatgtttcaagaggctatggctgctgattctcaaatcttcaaccttgctctaaaagagtgcaatcatgtgtttgaaggtttggagtctatagtt |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11445315 |
actgagtatgtttcaagaggctatggctgctgattctcaaatcttcaaccttgctctaaaagagtgcaatcatgtgtttgaaggtttggagtctatagtt |
11445216 |
T |
|
| Q |
319 |
gatgttggaggtggaagaggaggtttcacaaaactcatccatgaagcttttcctgacctcaaatgcacagtatttgatcaaccacaggtt |
408 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11445215 |
gatgttggaggtggaagaggaggtttcacaaaactcatccatgaagcttttcctgacctcaaatgcacagtatttgatcaaccacaggtt |
11445126 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 378; E-Value: 0
Query Start/End: Original strand, 19 - 408
Target Start/End: Original strand, 11547575 - 11547964
Alignment:
| Q |
19 |
actcctccttcaatgcttctcataagtggcaaatcaacatgtttgtcaccatttgttagcggagtgcttcatccatgtcgtctgaacatgtggcactcct |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
11547575 |
actcctccttcaatgcttctcataagtggcaaatcaacatgtttgtcaccatttgttagcggagtgcttcatccatgtcgtctgaacgtgtggcactcct |
11547674 |
T |
|
| Q |
119 |
ctaagaaatggctcactgaggacaaggaacttagcctctttgagagcgcaagaggagagacattttgggactatcttaacaaagatactgaatctgatga |
218 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11547675 |
ctaagaaatggctcactgaggacaaggaactcagcctatttgagagcgcaagaggagagacattttgggactatcttaacaaagatactgaatctgatga |
11547774 |
T |
|
| Q |
219 |
actgagtatgtttcaagaggctatggctgctgattctcaaatcttcaaccttgctctaaaagagtgcaatcatgtgtttgaaggtttggagtctatagtt |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11547775 |
actgagtatgtttcaagaggctatggctgctgattctcaaatcttcaaccttgctctaaaagagtgcaatcatgtgtttgaaggtttggagtctatagtt |
11547874 |
T |
|
| Q |
319 |
gatgttggaggtggaagaggaggtttcacaaaactcatccatgaagcttttcctgacctcaaatgcacagtatttgatcaaccacaggtt |
408 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11547875 |
gatgttggaggtggaagaggaggtttcacaaaactcatccatgaagcttttcctgacctcaaatgcacagtatttgatcaaccacaggtt |
11547964 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 19 - 408
Target Start/End: Original strand, 11507344 - 11507733
Alignment:
| Q |
19 |
actcctccttcaatgcttctcataagtggcaaatcaacatgtttgtcaccatttgttagcggagtgcttcatccatgtcgtctgaacatgtggcactcct |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| | |||||||||||||||||||||| ||| |||||| |
|
|
| T |
11507344 |
actcctccttcaatgcttctcataagtggcaaatcaacatgtttgtcaccatttgttaccggaacggttcatccatgtcgtctgaacatatggtactcct |
11507443 |
T |
|
| Q |
119 |
ctaagaaatggctcactgaggacaaggaacttagcctctttgagagcgcaagaggagagacattttgggactatcttaacaaagatactgaatctgatga |
218 |
Q |
| |
|
||| |||||||||||||||||| |||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11507444 |
ctacgaaatggctcactgaggagaaggaactcagtctctttgagagcgcaagaggagagacattttgggactatcttaacaaagatactgaatctgatga |
11507543 |
T |
|
| Q |
219 |
actgagtatgtttcaagaggctatggctgctgattctcaaatcttcaaccttgctctaaaagagtgcaatcatgtgtttgaaggtttggagtctatagtt |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
11507544 |
actgagtatgtttcaagaggctatggctgctgattctcaaatcttcaaccttgctctaaaagagtgcaatcatgtgtttgaaggtttgaagtctatagtt |
11507643 |
T |
|
| Q |
319 |
gatgttggaggtggaagaggaggtttcacaaaactcatccatgaagcttttcctgacctcaaatgcacagtatttgatcaaccacaggtt |
408 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11507644 |
gatgttggaggtggaagaggaggtttcacaaaactcatccatgaagcttttcctgacctcaaatgcacagtatttgatcaaccacaggtt |
11507733 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 22 - 408
Target Start/End: Complemental strand, 11468502 - 11468116
Alignment:
| Q |
22 |
cctccttcaatgcttctcataagtggcaaatcaacatgtttgtcaccatttgttagcggagtgcttcatccatgtcgtctgaacatgtggcactcctcta |
121 |
Q |
| |
|
|||||||||| ||||||||| | ||| ||||||| ||||| ||||| |||||| ||| | |||||||||||| |||| | |||||||||||||||| |
|
|
| T |
11468502 |
cctccttcaaagcttctcatcaatggtgaatcaacttgttttgcaccacttgttaagggaattcttcatccatgttctctggatatgtggcactcctcta |
11468403 |
T |
|
| Q |
122 |
agaaatggctcactgaggacaaggaacttagcctctttgagagcgcaagaggagagacattttgggactatcttaacaaagatactgaatctgatgaact |
221 |
Q |
| |
|
|||||||| || | ||||| ||||| ||| || | ||| || |||| || |||||||||| ||| ||||||||||||| ||||||||||| |||| |
|
|
| T |
11468402 |
agaaatggttctcagaggagaaggatcttgcactttatgaaagtgcaatgggggagacattttttaactttcttaacaaagattctgaatctgataaact |
11468303 |
T |
|
| Q |
222 |
gagtatgtttcaagaggctatggctgctgattctcaaatcttcaaccttgctctaaaagagtgcaatcatgtgtttgaaggtttggagtctatagttgat |
321 |
Q |
| |
|
|| ||||||||| ||| ||||| |||||||| ||||| || || |||||||| || || |||| ||||||||||| |||||||| ||| | |||||| |
|
|
| T |
11468302 |
tggtctgtttcaaggggccatggcagctgattcacaaatgtttaagcttgctctcaaggactgcagccatgtgtttgagggtttggaatctttggttgat |
11468203 |
T |
|
| Q |
322 |
gttggaggtggaagaggaggtttcacaaaactcatccatgaagcttttcctgacctcaaatgcacagtatttgatcaaccacaggtt |
408 |
Q |
| |
|
|| | |||||| | |||| | | |||||||||| ||||||| ||||| || ||||||||||||| || ||||||||||||||| |
|
|
| T |
11468202 |
gtggcaggtgggactggagttgtgtcaaaactcattcatgaagaatttccacacatcaaatgcacagttttagatcaaccacaggtt |
11468116 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 22 - 408
Target Start/End: Original strand, 11522959 - 11523345
Alignment:
| Q |
22 |
cctccttcaatgcttctcataagtggcaaatcaacatgtttgtcaccatttgttagcggagtgcttcatccatgtcgtctgaacatgtggcactcctcta |
121 |
Q |
| |
|
|||||||||| ||||||||| | ||| ||||||| ||||| ||||| |||||| ||| | |||||||||||| |||| | |||||||||||||||| |
|
|
| T |
11522959 |
cctccttcaaagcttctcatcaatggtgaatcaacttgttttgcaccacttgttaagggaattcttcatccatgttctctggatatgtggcactcctcta |
11523058 |
T |
|
| Q |
122 |
agaaatggctcactgaggacaaggaacttagcctctttgagagcgcaagaggagagacattttgggactatcttaacaaagatactgaatctgatgaact |
221 |
Q |
| |
|
|||||||| || | ||||| ||||| ||| || | ||| || |||| || |||||||||| ||| ||||||||||||| ||||||||||| |||| |
|
|
| T |
11523059 |
agaaatggttctcagaggagaaggatcttgcactttatgaaagtgcaatgggggagacattttttaactttcttaacaaagattctgaatctgataaact |
11523158 |
T |
|
| Q |
222 |
gagtatgtttcaagaggctatggctgctgattctcaaatcttcaaccttgctctaaaagagtgcaatcatgtgtttgaaggtttggagtctatagttgat |
321 |
Q |
| |
|
|| ||||||||| ||| ||||| |||||||| ||||| || || |||||||| || || |||| ||||||||||| |||||||| ||| | |||||| |
|
|
| T |
11523159 |
tggtctgtttcaaggggccatggcagctgattcacaaatgtttaagcttgctctcaaggactgcagccatgtgtttgagggtttggaatctttggttgat |
11523258 |
T |
|
| Q |
322 |
gttggaggtggaagaggaggtttcacaaaactcatccatgaagcttttcctgacctcaaatgcacagtatttgatcaaccacaggtt |
408 |
Q |
| |
|
|| | |||||| | |||| | | |||||||||| ||||||| ||||| || ||||||||||||| || ||||||||||||||| |
|
|
| T |
11523259 |
gtggcaggtgggactggagttgtgtcaaaactcattcatgaagaatttccacacatcaaatgcacagttttagatcaaccacaggtt |
11523345 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 26 - 408
Target Start/End: Original strand, 34784157 - 34784539
Alignment:
| Q |
26 |
cttcaatgcttctcataagtggcaaatcaacatgtttgtcaccatttgttagcggagtgcttcatccatgtcgtctgaacatgtggcactcctctaagaa |
125 |
Q |
| |
|
|||||| ||||||||||||||| ||||| |||||||| ||| | || || |||| ||||||| || || | | |||||||| | || || ||||| |
|
|
| T |
34784157 |
cttcaaagcttctcataagtggaaaatcgacatgtttatcaacgcttattgaaggagcgcttcatgcaagttctatagacatgtggaagtcttcaaagaa |
34784256 |
T |
|
| Q |
126 |
atggctcactgaggacaaggaacttagcctctttgagagcgcaagaggagagacattttgggactatcttaacaaagatactgaatctgatgaactgagt |
225 |
Q |
| |
|
|||| ||| |||||| ||||||| | || |||||| | |||| |||||||| | |||||| | ||||||||||||| ||||||||| | ||||| |
|
|
| T |
34784257 |
atggttcaatgaggataaggaacaaactctttttgagtgtgcaacaggagagaactattgggattttcttaacaaagattctgaatctggtactttgagt |
34784356 |
T |
|
| Q |
226 |
atgtttcaagaggctatggctgctgattctcaaatcttcaaccttgctctaaaagagtgcaatcatgtgtttgaaggtttggagtctatagttgatgttg |
325 |
Q |
| |
|
|||||||||| |||||||||||||||||| ||| || || |||||||| | ||| ||| |||||||||| |||||||| ||| | |||||||| | |
|
|
| T |
34784357 |
ttgtttcaagatgctatggctgctgattctagaatgtttaagcttgctcttcatgagaacaagaatgtgtttgagggtttggaatctcttgttgatgtcg |
34784456 |
T |
|
| Q |
326 |
gaggtggaagaggaggtttcacaaaactcatccatgaagcttttcctgacctcaaatgcacagtatttgatcaaccacaggtt |
408 |
Q |
| |
|
||||||| || | | ||||||| || || |||||||| |||||| | |||||||||| || |||||||||||||||||| |
|
|
| T |
34784457 |
cgggtggaaccggtgctgtcacaaagcttattcatgaagcatttcctcagatcaaatgcactgtttttgatcaaccacaggtt |
34784539 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 22 - 408
Target Start/End: Original strand, 34775941 - 34776327
Alignment:
| Q |
22 |
cctccttcaatgcttctcataagtggcaaatcaacatgtttgtcaccatttgttagcggagtgcttcatccatgtcgtctgaacatgtggcactcctcta |
121 |
Q |
| |
|
|||||||||| ||||||||||||||| ||| |||||||||| || || |||||| |||| ||||||||| || | | |||||||| ||||| | |
|
|
| T |
34775941 |
cctccttcaaagcttctcataagtggaaaaccaacatgtttatcttcaattgttaaaggagcacttcatccaagttctttagacatgtggagttcctcaa |
34776040 |
T |
|
| Q |
122 |
agaaatggctcactgaggacaaggaacttagcctctttgagagcgcaagaggagagacattttgggactatcttaacaaagatactgaatctgatgaact |
221 |
Q |
| |
|
|||||||| ||| ||| || ||||||| | | |||||| | |||| ||| |||| |||||||| | ||||||||||||| |||||||| | | |
|
|
| T |
34776041 |
agaaatggttcaatgaagataaggaacaaacattgtttgagtgtgcaacaggggagagtttttgggattttcttaacaaagattctgaatctagtacttt |
34776140 |
T |
|
| Q |
222 |
gagtatgtttcaagaggctatggctgctgattctcaaatcttcaaccttgctctaaaagagtgcaatcatgtgtttgaaggtttggagtctatagttgat |
321 |
Q |
| |
|
||||||||||||||| |||||||| |||||||| ||| || || |||| ||| ||||| || | || || || |||||||||||| | |||||| |
|
|
| T |
34776141 |
gagtatgtttcaagatgctatggcatctgattctagaatgtttaagcttgttctccaagagaataaacgcgttttcgagggtttggagtctcttgttgat |
34776240 |
T |
|
| Q |
322 |
gttggaggtggaagaggaggtttcacaaaactcatccatgaagcttttcctgacctcaaatgcacagtatttgatcaaccacaggtt |
408 |
Q |
| |
|
||||||||||| | || ||| | ||||||||||| |||||| ||||||| |||| ||||| || || |||||||||||||||||| |
|
|
| T |
34776241 |
gttggaggtggtactggtggtgttacaaaactcattcatgaaatttttcctcaccttaaatgtactgtttttgatcaaccacaggtt |
34776327 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0794 (Bit Score: 346; Significance: 0; HSPs: 1)
Name: scaffold0794
Description:
Target: scaffold0794; HSP #1
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 19 - 408
Target Start/End: Original strand, 2001 - 2390
Alignment:
| Q |
19 |
actcctccttcaatgcttctcataagtggcaaatcaacatgtttgtcaccatttgttagcggagtgcttcatccatgtcgtctgaacatgtggcactcct |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| | |||||||||||||||||||||| ||| |||||| |
|
|
| T |
2001 |
actcctccttcaatgcttctcataagtggcaaatcaacatgtttgtcaccatttgttaccggaacggttcatccatgtcgtctgaacatatggtactcct |
2100 |
T |
|
| Q |
119 |
ctaagaaatggctcactgaggacaaggaacttagcctctttgagagcgcaagaggagagacattttgggactatcttaacaaagatactgaatctgatga |
218 |
Q |
| |
|
||| |||||||||||||||||| |||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2101 |
ctacgaaatggctcactgaggagaaggaactcagtctctttgagagcgcaagaggagagacattttgggactatcttaacaaagatactgaatctgatga |
2200 |
T |
|
| Q |
219 |
actgagtatgtttcaagaggctatggctgctgattctcaaatcttcaaccttgctctaaaagagtgcaatcatgtgtttgaaggtttggagtctatagtt |
318 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
2201 |
actgagtatgtttcaagaggctatggctgctgattctcaaatcttcaaccttgctctaaaagagtgcaatcatgtgtttgaaggtttggggtctatagtt |
2300 |
T |
|
| Q |
319 |
gatgttggaggtggaagaggaggtttcacaaaactcatccatgaagcttttcctgacctcaaatgcacagtatttgatcaaccacaggtt |
408 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2301 |
gatgttggaggtggaagaggaggtttcacaaaactcatccatgaagcttttcctgacctcaaatgcacagtatttgatcaaccacaggtt |
2390 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University