View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15029_high_5 (Length: 358)
Name: NF15029_high_5
Description: NF15029
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15029_high_5 |
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Alignment Details
Target: chr3 (Bit Score: 323; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 23 - 345
Target Start/End: Original strand, 936642 - 936964
Alignment:
| Q |
23 |
agcaaaagttccatgtccattcattctatgggttctagcaagaggaacaattctgtgagggaaatgagtagtttaaaccattcaggatcaaaaagtactg |
122 |
Q |
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| T |
936642 |
agcaaaagttccatgtccattcattctatgggttctagcaagaggaacaattctgtgagggaaatgagtagtttaaaccattcaggatcaaaaagtactg |
936741 |
T |
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| Q |
123 |
tgaggtatggttcaaaaggtggtggtgattctgaagggttaaccatgtcacaaagagaacttagagatgaagatgcaagattggtatatataaatgatcc |
222 |
Q |
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| T |
936742 |
tgaggtatggttcaaaaggtggtggtgattctgaagggttaaccatgtcacaaagagaacttagagatgaagatgcaagattggtatatataaatgatcc |
936841 |
T |
|
| Q |
223 |
tgagaaaaccaatgagaattttgagtttttcggaaattcaattcgaactgctaaatactcaattctcactttcattccaaggaatttgtttgaacagttt |
322 |
Q |
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| T |
936842 |
tgagaaaaccaatgagaattttgagtttttcggaaattcaattcgaactgctaaatactcaattctcactttcattccaaggaatttgtttgaacagttt |
936941 |
T |
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| Q |
323 |
catagagttgcttatatatattt |
345 |
Q |
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| T |
936942 |
catagagttgcttatatatattt |
936964 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 120 - 345
Target Start/End: Original strand, 16941220 - 16941445
Alignment:
| Q |
120 |
ctgtgaggtatggttcaaaaggtggtggtgattctgaagggttaaccatgtcacaaagagaacttagagatgaagatgcaagattggtatatataaatga |
219 |
Q |
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| T |
16941220 |
ctgtgagatatggatcaaagggtgctgttgattctgaagcattcagcatgtctcagaaagaaatcagtgatgaagatgctaggttgatttatgttgatga |
16941319 |
T |
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| Q |
220 |
tcctgagaaaaccaatgagaattttgagtttttcggaaattcaattcgaactgctaaatactcaattctcactttcattccaaggaatttgtttgaacag |
319 |
Q |
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| T |
16941320 |
tcctgatagaacaaatgagagatttgaatttgctgggaattcggttcggaccggaaaatactcttttataacttttcttcctaggaatttgtttgaacag |
16941419 |
T |
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| Q |
320 |
tttcatagagttgcttatatatattt |
345 |
Q |
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| T |
16941420 |
tttcatagagttgcttatatttattt |
16941445 |
T |
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