View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15029_high_6 (Length: 343)
Name: NF15029_high_6
Description: NF15029
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15029_high_6 |
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Alignment Details
Target: chr3 (Bit Score: 281; Significance: 1e-157; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 12 - 316
Target Start/End: Complemental strand, 42958611 - 42958308
Alignment:
| Q |
12 |
atgaagctgaaaataggtgttgagtatcagagtggaaacaattttcatcatccgctaccgaaggaattataagctgtgtaaatttcctcattgggatgct |
111 |
Q |
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| T |
42958611 |
atgaagctgaaaataggtgttgagtatcagagtggaaacaattttcatcatccgctaccgaaggaattataagctgtgtaaatttcctcattgggatgct |
42958512 |
T |
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| Q |
112 |
agtcattactgattatattagtgaacatagcctaatttttactgtggacaatgacagtccaggacgacggtaattaaccatgtgaaaatgttaaaatcaa |
211 |
Q |
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| T |
42958511 |
agtgattactgattatattagtgaacatagcctaatttttaccgtggacaatgacagtccaggacgacggtaattaaccatgtgaaaatgttaaaatcaa |
42958412 |
T |
|
| Q |
212 |
gtgctactggtcaagctttgctttgctattcttccataaattacactcaccttcctttggataacttgaaacaaaatgaagcggaacaaagactccatta |
311 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||| |||| |
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| T |
42958411 |
gtgctactggtcaagctttgctttgctattcttccataaattacactcaccttcctttggagaacttgaaac-aaatgaagcggaacaaagactctatta |
42958313 |
T |
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| Q |
312 |
tattg |
316 |
Q |
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||||| |
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| T |
42958312 |
tattg |
42958308 |
T |
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