View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15029_low_1 (Length: 731)

Name: NF15029_low_1
Description: NF15029
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15029_low_1
NF15029_low_1
[»] chr6 (1 HSPs)
chr6 (5-712)||(5743252-5743947)


Alignment Details
Target: chr6 (Bit Score: 565; Significance: 0; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 565; E-Value: 0
Query Start/End: Original strand, 5 - 712
Target Start/End: Complemental strand, 5743947 - 5743252
Alignment:
Q  5 gtagcatagggtgcgtgaagatgtggaaggcttccgcaaagtctgtttattgtaaaaagaattattagtcgaggttttacaattggattgcgtgcgcatt 104  Q
    ||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||| ||||    
T  5743947 gtagcattgggtgcgtgaagatatggaaggcttccgcaaagtctgtttattgtaaaaagaatcattagtcgaggttttacaattggattgtgtgcccatt 5743848  T
Q  105 gcaattttcgatatagcaggaaatcacgtttcaatggtgatgaaatcatgatcgatgttgtgatgcagttgtgaagacattaaaaactttcatggctggg 204  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  5743847 gcaattttcgatatagcaggaaatcacgtttcaatggtgatgaaatcatgatccatgttgtgatgcagttgtgaagacattaaaaactttcatggctggg 5743748  T
Q  205 aagaaaatcatcttttcgggcaacttttttaaagtcttgggtccaagtttccttcaggtggtgatgcaagtgcgcggtttattagcatttatcgtacaca 304  Q
    ||||||||||||||||||| |||||||||||||| ||||||||||||||||||| ||||  | |  |||         ||||||||||||||| ||||||    
T  5743747 aagaaaatcatcttttcggacaacttttttaaagccttgggtccaagtttccttaaggt--ttacacaa---------ttattagcatttatcatacaca 5743659  T
Q  305 taaatgatagacatatacacgacaatataggtgctcataatcttaccatttaacaatggtttacacagttttcgcctacatcttattgaataaaggtgat 404  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5743658 taaatgacagacatatacacgacaatataggtgctcataatcttaccatttaacaatggtttacacagttttcgcctacatcttattgaataaaggtgat 5743559  T
Q  405 cattgttggattctgagagaaacctaaaacac---atttcaccttaagtttcattgtatgtgaaactttttactcacataagacacttcaatatttcccc 501  Q
    |||||||||||| |||||||| ||||||||||   ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  5743558 cattgttggattgtgagagaagcctaaaacactacatttcaccttaagtttcattgtatgtgaaacttcttactcacataagacacttcaatatttcccc 5743459  T
Q  502 tatcaagtatgagttcacctattcatcaagtttacttcctctcaagtggttttctttcacatacactcgcgtcttagttggcttacatacattatgacac 601  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5743458 tatcaagtatgagttcacctattcatcaagtttacttcctctcaagtggttttctttcacatacactcgcgtcttagttggcttacatacattatgacac 5743359  T
Q  602 atcacctgaccactacattgtcgggaagattttccacatcagaagttactcacttttggttaaaccattggctctgataccacaatttattgcatcacga 701  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    ||||||||||||    
T  5743358 atcacctgaccactacattgtcaggaagattttccacatcagaagttactcacttttggttaaaccattggctctgataccaca----attgcatcacga 5743263  T

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